Wall clock time and date at job start Tue Mar 31 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46741 * 2 1 4 4 O 1.42906 * 109.46960 * 174.65014 * 3 2 1 5 5 N 1.46499 * 109.47053 * 120.00110 * 2 1 3 6 6 S 1.65597 * 119.99809 * 305.24554 * 5 2 1 7 7 O 1.42100 * 106.39949 * 183.00007 * 6 5 2 8 8 O 1.42098 * 106.40391 * 315.91692 * 6 5 2 9 9 C 1.76197 * 107.22038 * 69.46159 * 6 5 2 10 10 C 1.38639 * 119.75025 * 256.22927 * 9 6 5 11 11 C 1.37614 * 120.25242 * 179.71856 * 10 9 6 12 12 C 1.40717 * 119.74188 * 0.56994 * 11 10 9 13 13 C 1.41393 * 120.24398 * 179.68177 * 12 11 10 14 14 H 1.07998 * 120.00326 * 28.13955 * 13 12 11 15 15 C 1.39950 * 119.99978 * 208.13597 * 13 12 11 16 16 N 1.30822 * 119.99757 * 12.35193 * 15 13 12 17 17 Si 1.86795 * 120.00178 * 192.34885 * 15 13 12 18 18 H 1.48503 * 109.47091 * 60.00323 * 17 15 13 19 19 H 1.48499 * 109.47416 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46922 * 300.00295 * 17 15 13 21 21 C 1.40722 * 119.51132 * 359.70311 * 12 11 10 22 22 C 1.37624 * 119.74365 * 0.02562 * 21 12 11 23 23 C 1.50699 * 109.46904 * 240.00216 * 2 1 3 24 24 O 1.20820 * 120.00300 * 24.99922 * 23 2 1 25 25 O 1.34234 * 119.99529 * 204.99849 * 23 2 1 26 26 H 1.09000 * 109.47162 * 199.07484 * 1 2 3 27 27 H 1.08997 * 109.46877 * 319.08069 * 1 2 3 28 28 H 1.09005 * 109.46964 * 79.07646 * 1 2 3 29 29 H 1.08994 * 109.47383 * 294.64599 * 3 2 1 30 30 H 1.08998 * 109.47395 * 54.64969 * 3 2 1 31 31 H 0.96699 * 114.00227 * 179.97438 * 4 3 2 32 32 H 0.97000 * 120.00038 * 125.24757 * 5 2 1 33 33 H 1.08004 * 119.86816 * 359.97438 * 10 9 6 34 34 H 1.08000 * 120.13452 * 180.27512 * 11 10 9 35 35 H 0.97002 * 120.00363 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.12601 * 179.97438 * 21 12 11 37 37 H 1.07993 * 119.86975 * 179.97438 * 22 21 12 38 38 H 0.96701 * 116.99353 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4635 1.4445 0.1256 5 7 2.0184 -0.6906 1.1962 6 16 1.5140 -0.2046 2.6967 7 8 2.2101 -1.0131 3.6353 8 8 1.5730 1.2152 2.6995 9 6 -0.1894 -0.6321 2.8384 10 6 -1.1580 0.3527 2.7206 11 6 -2.4916 0.0294 2.8237 12 6 -2.8701 -1.3048 3.0616 13 6 -4.2370 -1.6478 3.1761 14 1 -4.9855 -1.0625 2.6627 15 6 -4.6201 -2.7457 3.9548 16 7 -3.7586 -3.3059 4.7644 17 14 -6.3616 -3.4113 3.8382 18 1 -6.6324 -3.8478 2.4449 19 1 -6.5122 -4.5676 4.7577 20 1 -7.3247 -2.3473 4.2197 21 6 -1.8781 -2.2953 3.1851 22 6 -0.5507 -1.9498 3.0728 23 6 2.0323 -0.7104 -1.2305 24 8 1.3396 -0.7702 -2.2186 25 8 3.2494 -1.2766 -1.2287 26 1 -0.3633 -0.9712 0.3358 27 1 -0.3633 0.7765 0.6731 28 1 -0.3633 0.1948 -1.0091 29 1 1.7570 1.9279 -0.9340 30 1 1.6005 1.9833 0.8382 31 1 3.8565 2.3280 0.1324 32 1 2.6371 -1.4326 1.1092 33 1 -0.8648 1.3770 2.5431 34 1 -3.2448 0.7975 2.7272 35 1 -4.0242 -4.0667 5.3044 36 1 -2.1574 -3.3223 3.3681 37 1 0.2123 -2.7082 3.1677 38 1 3.5281 -1.7206 -2.0413 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313560100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:53 Heat of formation + Delta-G solvation = -219.335281 kcal Electronic energy + Delta-G solvation = -27075.374748 eV Core-core repulsion = 23008.662464 eV Total energy + Delta-G solvation = -4066.712284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.71179 -39.44656 -38.77687 -37.89458 -37.23113 -36.77395 -36.20447 -35.73015 -32.08119 -31.58704 -31.03969 -27.75968 -27.15108 -25.67706 -23.26073 -22.94117 -21.57211 -20.24368 -19.56442 -19.36673 -18.96863 -18.40505 -18.21795 -17.64099 -17.14232 -16.91254 -16.40323 -15.89523 -15.63717 -15.35605 -15.17207 -14.93624 -14.42390 -14.24093 -14.09785 -13.95121 -13.78005 -13.44732 -13.27739 -13.10331 -13.06095 -12.93961 -12.85736 -12.70959 -12.61618 -12.56361 -12.42694 -12.00537 -11.67249 -11.51304 -11.36135 -11.17905 -10.79767 -10.59558 -9.69378 -9.46161 -8.79840 -6.62372 -0.37694 0.50448 1.00431 1.09600 1.37336 1.44948 1.50281 1.85421 2.12457 2.17861 2.55927 2.92266 3.04055 3.48628 3.59058 3.70145 3.94721 4.17041 4.24916 4.32100 4.37756 4.48758 4.64598 4.82311 4.88341 4.92738 4.99784 5.14485 5.19010 5.26669 5.51235 5.56971 5.62657 5.79043 5.95394 6.00364 6.20198 6.53972 6.73044 6.84625 6.87072 6.95188 8.14085 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.019172 B = 0.003863 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.111451 B = 7247.082110 C = 7770.746727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.202 3.798 3 C 0.047 3.953 4 O -0.571 6.571 5 N -1.095 6.095 6 S 2.727 3.273 7 O -1.005 7.005 8 O -0.981 6.981 9 C -0.789 4.789 10 C 0.003 3.997 11 C -0.247 4.247 12 C 0.115 3.885 13 C -0.470 4.470 14 H 0.092 0.908 15 C 0.033 3.967 16 N -0.808 5.808 17 Si 0.990 3.010 18 H -0.257 1.257 19 H -0.268 1.268 20 H -0.256 1.256 21 C -0.202 4.202 22 C -0.020 4.020 23 C 0.505 3.495 24 O -0.530 6.530 25 O -0.495 6.495 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.400 0.600 32 H 0.427 0.573 33 H 0.135 0.865 34 H 0.114 0.886 35 H 0.295 0.705 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.895 4.632 -10.023 13.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.112 3.888 3 C -0.032 4.032 4 O -0.380 6.380 5 N -0.855 5.855 6 S 2.823 3.177 7 O -0.996 6.996 8 O -0.971 6.971 9 C -0.882 4.882 10 C -0.017 4.017 11 C -0.267 4.267 12 C 0.112 3.888 13 C -0.498 4.498 14 H 0.110 0.890 15 C -0.185 4.185 16 N -0.431 5.431 17 Si 0.810 3.190 18 H -0.181 1.181 19 H -0.193 1.193 20 H -0.180 1.180 21 C -0.223 4.223 22 C -0.040 4.040 23 C 0.346 3.654 24 O -0.420 6.420 25 O -0.307 6.307 26 H 0.095 0.905 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.099 0.901 30 H 0.116 0.884 31 H 0.250 0.750 32 H 0.264 0.736 33 H 0.153 0.847 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 7.997 4.540 -9.108 12.943 hybrid contribution -0.868 -0.929 -0.496 1.365 sum 7.129 3.610 -9.605 12.494 Atomic orbital electron populations 1.22702 0.89851 1.05405 1.06138 1.20163 0.95184 0.92255 0.81207 1.23034 0.83501 0.92649 1.04017 1.86438 1.18587 1.35608 1.97320 1.55333 1.60896 1.48486 1.20829 1.00338 0.73352 0.72652 0.71376 1.93485 1.74267 1.71358 1.60498 1.93406 1.87522 1.29916 1.86236 1.29600 1.21957 1.01796 1.34870 1.20445 0.92282 0.97135 0.91833 1.21281 0.95686 0.95551 1.14177 1.18198 0.93942 0.91660 0.85026 1.20193 0.93439 1.10949 1.25200 0.88995 1.26962 1.04482 0.94835 0.92246 1.69845 1.38562 1.18383 1.16359 0.85109 0.75802 0.78438 0.79654 1.18092 1.19266 1.18007 1.21344 0.92389 0.99420 1.09100 1.20381 0.96143 0.93862 0.93587 1.22874 0.79092 0.74948 0.88534 1.90726 1.57924 1.57381 1.35930 1.84509 1.32988 1.66384 1.46843 0.90549 0.89041 0.88106 0.90090 0.88442 0.75022 0.73634 0.84701 0.86823 0.89367 0.87512 0.87230 0.70858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.09 6.86 71.98 0.49 -4.60 16 2 C 0.20 5.31 0.87 2.86 0.00 5.31 16 3 C 0.05 1.08 5.42 71.98 0.39 1.47 16 4 O -0.57 -12.38 13.17 -148.98 -1.96 -14.34 16 5 N -1.10 -31.33 5.23 -155.18 -0.81 -32.14 16 6 S 2.73 96.96 5.48 -56.49 -0.31 96.65 16 7 O -1.01 -42.12 17.67 -128.00 -2.26 -44.39 16 8 O -0.98 -34.99 13.83 -128.00 -1.77 -36.76 16 9 C -0.79 -31.91 3.88 22.46 0.09 -31.82 16 10 C 0.00 0.11 7.11 22.22 0.16 0.27 16 11 C -0.25 -10.91 9.80 22.73 0.22 -10.69 16 12 C 0.12 5.72 5.55 -21.29 -0.12 5.60 16 13 C -0.47 -22.94 9.06 23.46 0.21 -22.73 16 14 H 0.09 4.19 7.88 -2.91 -0.02 4.17 16 15 C 0.03 1.51 5.23 85.26 0.45 1.95 16 16 N -0.81 -39.41 10.88 21.83 0.24 -39.17 16 17 Si 0.99 34.64 29.58 68.60 2.03 36.67 16 18 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 19 H -0.27 -9.00 7.11 99.48 0.71 -8.29 16 20 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 21 C -0.20 -10.04 8.67 22.73 0.20 -9.84 16 22 C -0.02 -0.88 9.51 22.22 0.21 -0.67 16 23 C 0.50 12.52 6.91 71.24 0.49 13.01 16 24 O -0.53 -15.20 16.46 21.98 0.36 -14.84 16 25 O -0.49 -9.45 12.59 -51.45 -0.65 -10.10 16 26 H 0.08 2.42 7.21 -2.39 -0.02 2.40 16 27 H 0.09 2.51 5.09 -2.39 -0.01 2.50 16 28 H 0.10 2.57 7.14 -2.38 -0.02 2.55 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 2.41 5.55 -2.39 -0.01 2.39 16 31 H 0.40 5.05 9.12 -74.06 -0.68 4.37 16 32 H 0.43 11.02 7.99 -96.75 -0.77 10.24 16 33 H 0.14 4.59 6.93 -2.91 -0.02 4.57 16 34 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 35 H 0.30 13.00 8.30 -92.71 -0.77 12.23 16 36 H 0.11 5.54 6.23 -2.91 -0.02 5.52 16 37 H 0.11 4.52 7.94 -2.91 -0.02 4.50 16 38 H 0.43 4.04 9.10 -74.06 -0.67 3.37 16 Total: -1.00 -67.31 329.75 -3.30 -70.61 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -0.96 Total: 40.54 kcal Atomic # 6 Polarization: -55.52 SS G_CDS: 2.79 Total: -52.73 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -0.57 Total: -71.32 kcal Atomic # 8 Polarization: -114.14 SS G_CDS: -6.28 Total: -120.42 kcal Atomic # 14 Polarization: 34.64 SS G_CDS: 2.03 Total: 36.67 kcal Atomic # 16 Polarization: 96.96 SS G_CDS: -0.31 Total: 96.65 kcal Total: -67.31 -3.30 -70.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313560100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.725 kcal (2) G-P(sol) polarization free energy of solvation -67.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds