Wall clock time and date at job start Tue Mar 31 2020 05:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00115 * 2 1 4 4 H 1.48500 * 109.46768 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47201 * 119.99462 * 3 2 1 6 6 H 1.48495 * 109.47205 * 240.00106 * 3 2 1 7 7 C 1.37876 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00675 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99947 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47401 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99503 * 269.99864 * 10 9 7 12 12 C 1.53004 * 109.47363 * 90.60785 * 11 10 9 13 13 F 1.39898 * 109.47093 * 59.99861 * 12 11 10 14 14 F 1.39895 * 109.47334 * 180.02562 * 12 11 10 15 15 F 1.39907 * 109.46690 * 299.99682 * 12 11 10 16 16 C 1.34770 * 120.00365 * 89.99553 * 10 9 7 17 17 O 1.21281 * 120.00098 * 355.16270 * 16 10 9 18 18 C 1.50700 * 119.99954 * 175.16063 * 16 10 9 19 19 H 1.09004 * 110.01035 * 28.13382 * 18 16 10 20 20 C 1.53874 * 110.02876 * 266.70143 * 18 16 10 21 21 C 1.54163 * 108.70609 * 193.52626 * 20 18 16 22 22 S 1.82923 * 105.08447 * 27.91098 * 21 20 18 23 23 O 1.42098 * 109.35290 * 244.47552 * 22 21 20 24 24 O 1.42107 * 109.47287 * 111.30588 * 22 21 20 25 25 C 1.55048 * 110.02687 * 149.51236 * 18 16 10 26 26 H 0.96998 * 119.99962 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.47087 * 299.99981 * 9 7 2 28 28 H 1.08999 * 109.47271 * 59.99481 * 9 7 2 29 29 H 1.08997 * 109.47028 * 210.60640 * 11 10 9 30 30 H 1.08996 * 109.47454 * 330.60531 * 11 10 9 31 31 H 1.09000 * 109.64813 * 313.38015 * 20 18 16 32 32 H 1.09004 * 109.64511 * 73.67916 * 20 18 16 33 33 H 1.09003 * 110.32419 * 269.00906 * 21 20 18 34 34 H 1.09007 * 110.40573 * 146.85265 * 21 20 18 35 35 H 1.08999 * 110.79175 * 279.99527 * 25 18 16 36 36 H 1.09004 * 110.79173 * 43.45649 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0015 11 6 2.6800 -4.1688 -1.2701 12 6 3.9510 -3.4352 -1.7030 13 9 4.9376 -3.5942 -0.7239 14 9 4.4061 -3.9659 -2.9147 15 9 3.6711 -2.0742 -1.8663 16 6 2.6402 -4.1254 1.1657 17 8 2.3149 -3.6099 2.2142 18 6 3.5332 -5.3393 1.1681 19 1 4.1137 -5.3772 0.2463 20 6 2.6865 -6.6161 1.3118 21 6 3.6215 -7.7937 1.6519 22 16 5.0399 -7.0384 2.5258 23 8 6.2186 -7.2166 1.7523 24 8 5.0218 -7.4355 3.8901 25 6 4.4834 -5.2971 2.3926 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 0.8881 28 1 0.6247 -2.5563 -0.8919 29 1 2.8980 -5.2291 -1.1429 30 1 1.9114 -4.0449 -2.0329 31 1 1.9574 -6.4844 2.1113 32 1 2.1676 -6.8190 0.3749 33 1 3.9578 -8.2859 0.7393 34 1 3.1135 -8.5072 2.3008 35 1 5.3280 -4.6344 2.2043 36 1 3.9446 -4.9935 3.2902 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330946436.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:10 Heat of formation + Delta-G solvation = -251.005415 kcal Electronic energy + Delta-G solvation = -28081.837016 eV Core-core repulsion = 23471.894672 eV Total energy + Delta-G solvation = -4609.942345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.72010 -47.33896 -47.03347 -39.86763 -37.18391 -36.28446 -35.95978 -35.47434 -32.79617 -30.33991 -29.38769 -27.59115 -25.67054 -23.49703 -23.27514 -21.73961 -19.12848 -19.02152 -18.25848 -18.20635 -17.76603 -17.06738 -16.78509 -16.37514 -16.00927 -15.70336 -15.32223 -14.72026 -14.54863 -14.44248 -14.08579 -13.98494 -13.85416 -13.63909 -13.35665 -13.27253 -13.18742 -12.81602 -12.59658 -12.43090 -12.29562 -12.29040 -12.14950 -12.04248 -11.79747 -11.36690 -11.25241 -11.02763 -10.95345 -10.69855 -10.52633 -10.23139 -9.76799 -9.34521 -8.50603 -8.21438 -6.13408 -4.16202 -0.14299 2.28812 2.66048 3.15796 3.26430 3.30451 3.33702 3.39114 3.43300 3.81562 4.04586 4.10267 4.23246 4.31046 4.38757 4.45044 4.48301 4.58911 4.73357 4.82471 5.13804 5.20913 5.24286 5.29343 5.33041 5.38099 5.64597 5.74273 6.62968 7.07699 7.20680 7.81836 7.86648 8.06178 8.50827 8.85938 9.48741 10.95437 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.004579 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.809373 B = 6113.572200 C = 6769.882018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.065 3.935 3 Si 0.896 3.104 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.064 0.936 9 C 0.244 3.756 10 N -0.594 5.594 11 C 0.070 3.930 12 C 0.424 3.576 13 F -0.189 7.189 14 F -0.193 7.193 15 F -0.150 7.150 16 C 0.530 3.470 17 O -0.507 6.507 18 C -0.125 4.125 19 H 0.111 0.889 20 C -0.104 4.104 21 C -0.590 4.590 22 S 2.387 3.613 23 O -0.936 6.936 24 O -0.938 6.938 25 C -0.566 4.566 26 H 0.264 0.736 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.091 -15.379 -2.679 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.083 0.917 9 C 0.126 3.874 10 N -0.326 5.326 11 C -0.058 4.058 12 C 0.368 3.632 13 F -0.170 7.170 14 F -0.174 7.174 15 F -0.131 7.131 16 C 0.314 3.686 17 O -0.381 6.381 18 C -0.148 4.148 19 H 0.129 0.871 20 C -0.142 4.142 21 C -0.720 4.720 22 S 2.570 3.430 23 O -0.933 6.933 24 O -0.935 6.935 25 C -0.696 4.696 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.127 0.873 30 H 0.144 0.856 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.557 -15.350 -1.667 16.410 hybrid contribution 0.064 1.519 -0.679 1.665 sum 5.621 -13.831 -2.347 15.113 Atomic orbital electron populations 1.69903 1.05966 1.27273 1.50366 1.24858 0.94806 0.99182 0.94891 0.86583 0.79589 0.82692 0.78804 1.21196 1.20182 1.20088 1.21412 0.93708 0.90163 1.51127 0.91749 1.19547 0.86866 0.81874 0.99093 1.48245 1.45731 1.36196 1.02422 1.22672 0.93913 0.97880 0.91326 1.21484 0.86766 0.80488 0.74506 1.93127 1.65581 1.95418 1.62902 1.93149 1.90737 1.86519 1.47026 1.93387 1.93150 1.31560 1.94961 1.19687 0.80584 0.84054 0.84242 1.90719 1.56219 1.60525 1.30606 1.22211 0.97163 0.96090 0.99312 0.87148 1.21840 0.97878 0.88621 1.05904 1.30484 1.17987 1.08577 1.14928 1.09123 0.77759 0.79944 0.76141 1.93625 1.43178 1.84609 1.71902 1.93617 1.87214 1.80697 1.31983 1.30615 1.09734 1.22875 1.06415 0.92613 0.93140 0.94368 0.87273 0.85569 0.88505 0.88321 0.84278 0.84013 0.83869 0.82778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.30 13.29 55.43 0.74 -24.57 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.53 -13.83 7.72 -34.44 -0.27 -14.09 16 8 H 0.06 1.73 6.40 -52.49 -0.34 1.39 16 9 C 0.24 5.63 5.11 -5.19 -0.03 5.61 16 10 N -0.59 -10.57 2.40 -175.06 -0.42 -10.99 16 11 C 0.07 0.91 5.24 -4.04 -0.02 0.89 16 12 C 0.42 6.49 3.29 37.16 0.12 6.62 16 13 F -0.19 -2.99 14.94 2.25 0.03 -2.95 16 14 F -0.19 -2.62 17.32 2.25 0.04 -2.58 16 15 F -0.15 -2.93 13.91 2.25 0.03 -2.89 16 16 C 0.53 9.17 6.33 -10.99 -0.07 9.10 16 17 O -0.51 -10.96 15.60 5.56 0.09 -10.88 16 18 C -0.12 -1.48 1.79 -90.23 -0.16 -1.64 16 19 H 0.11 1.13 4.81 -51.93 -0.25 0.88 16 20 C -0.10 -0.86 5.70 -25.67 -0.15 -1.00 16 21 C -0.59 -3.83 7.26 37.77 0.27 -3.56 16 22 S 2.39 23.90 6.10 -107.50 -0.66 23.24 16 23 O -0.94 -12.20 18.15 -57.73 -1.05 -13.24 16 24 O -0.94 -12.50 18.15 -57.73 -1.05 -13.55 16 25 C -0.57 -6.44 6.51 38.24 0.25 -6.20 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 27 H 0.05 1.31 7.49 -51.92 -0.39 0.93 16 28 H 0.04 0.88 7.89 -51.93 -0.41 0.47 16 29 H 0.11 0.93 5.99 -51.93 -0.31 0.61 16 30 H 0.13 1.43 7.89 -51.93 -0.41 1.02 16 31 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 32 H 0.10 0.61 7.86 -51.93 -0.41 0.20 16 33 H 0.14 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.14 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.14 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.15 1.84 7.41 -51.93 -0.38 1.45 16 LS Contribution 321.69 15.07 4.85 4.85 Total: -1.00 -36.39 321.69 -6.28 -42.67 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -3.72 Total: -3.02 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -0.14 Total: -2.60 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.32 Total: -35.56 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -2.01 Total: -37.67 kcal Atomic # 9 Polarization: -8.53 SS G_CDS: 0.10 Total: -8.43 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 23.90 SS G_CDS: -0.66 Total: 23.24 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.39 -6.28 -42.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330946436.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.334 kcal (2) G-P(sol) polarization free energy of solvation -36.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds