Wall clock time and date at job start Tue Mar 31 2020 05:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00140 * 2 1 4 4 H 1.48494 * 109.46935 * 270.00055 * 3 2 1 5 5 H 1.48500 * 109.46745 * 29.99931 * 3 2 1 6 6 H 1.48496 * 109.47204 * 149.99642 * 3 2 1 7 7 C 1.37876 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00460 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99831 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47251 * 180.02562 * 9 7 2 11 11 C 1.46503 * 119.99849 * 269.99844 * 10 9 7 12 12 C 1.52997 * 109.47243 * 269.37992 * 11 10 9 13 13 F 1.39897 * 109.46897 * 56.70600 * 12 11 10 14 14 F 1.39903 * 109.47010 * 176.70560 * 12 11 10 15 15 F 1.39897 * 109.47283 * 296.70440 * 12 11 10 16 16 C 1.34780 * 120.00424 * 89.99964 * 10 9 7 17 17 O 1.21279 * 119.99916 * 185.29780 * 16 10 9 18 18 C 1.50704 * 119.99662 * 5.30010 * 16 10 9 19 19 H 1.08999 * 109.64346 * 32.80512 * 18 16 10 20 20 C 1.53877 * 109.64534 * 153.23982 * 18 16 10 21 21 C 1.55042 * 106.62001 * 167.03114 * 20 18 16 22 22 S 1.83280 * 102.57082 * 317.56421 * 21 20 18 23 23 O 1.42098 * 109.35394 * 136.61104 * 22 21 20 24 24 O 1.42100 * 109.35457 * 269.68354 * 22 21 20 25 25 C 1.54646 * 109.56550 * 272.47784 * 18 16 10 26 26 H 0.97002 * 119.99778 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47386 * 59.99872 * 9 7 2 28 28 H 1.09001 * 109.47469 * 300.00100 * 9 7 2 29 29 H 1.08994 * 109.46924 * 29.38330 * 11 10 9 30 30 H 1.09004 * 109.47212 * 149.37746 * 11 10 9 31 31 H 1.09003 * 110.02843 * 47.73861 * 20 18 16 32 32 H 1.08996 * 110.06263 * 286.34274 * 20 18 16 33 33 H 1.09000 * 110.78685 * 199.29242 * 21 20 18 34 34 H 1.09001 * 110.95425 * 75.90962 * 21 20 18 35 35 H 1.08999 * 110.39108 * 93.34480 * 25 18 16 36 36 H 1.09000 * 110.44204 * 331.01891 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 2.6799 -4.1700 -1.2664 12 6 1.7584 -5.3116 -1.7004 13 9 0.4443 -4.8406 -1.7926 14 9 2.1694 -5.7941 -2.9476 15 9 1.8189 -6.3437 -0.7581 16 6 2.6401 -4.1244 1.1695 17 8 3.4993 -4.9803 1.1727 18 6 2.0609 -3.6331 2.4712 19 1 1.0136 -3.3667 2.3289 20 6 2.1738 -4.7372 3.5371 21 6 1.8770 -4.0667 4.9032 22 16 2.7979 -2.4868 4.7806 23 8 1.9902 -1.4309 5.2824 24 8 4.1153 -2.6695 5.2810 25 6 2.8504 -2.3943 2.9545 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.6779 -3.3913 -2.0291 30 1 3.6935 -4.5500 -1.1380 31 1 3.1807 -5.1547 3.5370 32 1 1.4442 -5.5227 3.3404 33 1 2.2589 -4.6745 5.7235 34 1 0.8093 -3.8838 5.0239 35 1 2.3705 -1.4791 2.6078 36 1 3.8812 -2.4387 2.6028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330946437.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:11 Heat of formation + Delta-G solvation = -260.889922 kcal Electronic energy + Delta-G solvation = -27882.479903 eV Core-core repulsion = 23272.108934 eV Total energy + Delta-G solvation = -4610.370969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.074 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.78643 -47.33921 -47.23656 -39.86898 -36.87157 -36.03400 -35.74133 -35.36173 -32.89344 -30.55225 -29.17648 -27.26060 -25.60167 -23.52017 -23.29613 -21.68188 -18.96173 -18.71451 -18.26650 -18.14730 -17.59145 -16.99286 -16.61452 -16.46549 -15.97746 -15.47798 -15.31930 -14.65224 -14.54315 -14.20949 -14.16392 -13.98349 -13.72512 -13.60630 -13.43680 -13.42191 -13.24781 -12.59457 -12.42353 -12.26085 -12.13786 -12.02344 -11.92768 -11.84452 -11.72435 -11.50708 -11.20750 -11.08170 -10.90193 -10.57093 -10.35465 -10.23554 -10.01164 -9.44363 -8.73647 -8.27749 -6.37682 -4.46652 0.17873 2.53274 2.76897 3.10808 3.12918 3.22503 3.24843 3.29627 3.71808 4.10231 4.15616 4.18988 4.32973 4.42723 4.54146 4.70544 4.74603 4.94153 4.95610 4.99108 5.20455 5.40724 5.56485 5.60424 5.62240 5.79608 6.00453 6.18426 6.28564 6.88942 7.10340 7.54836 7.78124 7.82131 8.40691 8.62396 9.21846 10.69173 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.009593 B = 0.006453 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.084123 B = 4338.273688 C = 6554.868111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.069 3.931 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.065 0.935 9 C 0.230 3.770 10 N -0.591 5.591 11 C 0.080 3.920 12 C 0.431 3.569 13 F -0.179 7.179 14 F -0.189 7.189 15 F -0.182 7.182 16 C 0.535 3.465 17 O -0.549 6.549 18 C -0.097 4.097 19 H 0.121 0.879 20 C -0.106 4.106 21 C -0.588 4.588 22 S 2.381 3.619 23 O -0.938 6.938 24 O -0.943 6.943 25 C -0.567 4.567 26 H 0.269 0.731 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.167 0.833 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.451 -8.269 2.441 8.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.084 0.916 9 C 0.111 3.889 10 N -0.321 5.321 11 C -0.047 4.047 12 C 0.375 3.625 13 F -0.160 7.160 14 F -0.170 7.170 15 F -0.163 7.163 16 C 0.322 3.678 17 O -0.428 6.428 18 C -0.119 4.119 19 H 0.139 0.861 20 C -0.145 4.145 21 C -0.717 4.717 22 S 2.566 3.434 23 O -0.935 6.935 24 O -0.940 6.940 25 C -0.697 4.697 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.144 0.856 30 H 0.137 0.863 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.185 0.815 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.048 -7.968 3.169 8.816 hybrid contribution -0.221 0.384 -0.925 1.026 sum 1.827 -7.584 2.244 8.117 Atomic orbital electron populations 1.69896 1.05997 1.27811 1.48255 1.24927 0.94872 0.99315 0.94429 0.86574 0.80014 0.82977 0.78532 1.20352 1.20731 1.19515 1.21409 0.93710 0.90013 1.53542 0.91648 1.19756 0.87306 0.82045 0.99780 1.48140 1.46192 1.35068 1.02738 1.22429 0.97510 0.94365 0.90428 1.21534 0.81395 0.84877 0.74664 1.93199 1.38756 1.88165 1.95924 1.93150 1.90298 1.89644 1.43927 1.93189 1.96347 1.61778 1.64991 1.20081 0.81707 0.80784 0.85191 1.90653 1.31690 1.33025 1.87442 1.21720 1.02869 0.93335 0.93998 0.86078 1.22130 1.05776 0.98025 0.88573 1.30605 1.14787 1.21174 1.05137 1.09272 0.76373 0.78165 0.79639 1.93614 1.69936 1.52117 1.77840 1.93596 1.36006 1.86302 1.78097 1.30590 1.09970 1.06679 1.22496 0.92107 0.93577 0.93526 0.85590 0.86348 0.88159 0.88370 0.84540 0.84352 0.81531 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.29 13.29 55.43 0.74 -21.55 16 2 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 19.07 29.54 -169.99 -5.02 14.05 16 4 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.55 -12.34 8.05 -34.44 -0.28 -12.62 16 8 H 0.07 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.23 4.68 4.78 -5.19 -0.02 4.66 16 10 N -0.59 -10.52 2.36 -175.06 -0.41 -10.93 16 11 C 0.08 1.24 5.47 -4.04 -0.02 1.22 16 12 C 0.43 6.72 3.30 37.16 0.12 6.85 16 13 F -0.18 -3.02 16.17 2.25 0.04 -2.98 16 14 F -0.19 -2.75 17.32 2.25 0.04 -2.71 16 15 F -0.18 -3.03 16.51 2.25 0.04 -2.99 16 16 C 0.53 9.25 6.23 -10.98 -0.07 9.18 16 17 O -0.55 -10.27 15.09 5.56 0.08 -10.18 16 18 C -0.10 -1.41 2.24 -90.45 -0.20 -1.62 16 19 H 0.12 1.70 6.11 -51.93 -0.32 1.38 16 20 C -0.11 -1.24 5.56 -25.19 -0.14 -1.39 16 21 C -0.59 -5.83 7.31 38.24 0.28 -5.55 16 22 S 2.38 32.23 6.09 -107.50 -0.66 31.58 16 23 O -0.94 -15.84 18.14 -57.73 -1.05 -16.89 16 24 O -0.94 -15.40 18.15 -57.73 -1.05 -16.44 16 25 C -0.57 -8.33 6.44 38.02 0.24 -8.08 16 26 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 27 H 0.05 1.01 7.30 -51.93 -0.38 0.63 16 28 H 0.05 0.96 5.77 -51.93 -0.30 0.66 16 29 H 0.13 1.82 8.07 -51.93 -0.42 1.40 16 30 H 0.12 1.74 7.37 -51.93 -0.38 1.36 16 31 H 0.10 1.22 7.46 -51.93 -0.39 0.83 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.14 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.14 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.17 2.70 7.10 -51.93 -0.37 2.33 16 36 H 0.14 2.00 7.89 -51.93 -0.41 1.59 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -30.77 326.42 -6.29 -37.07 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.78 Total: 2.87 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.19 Total: -5.79 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.32 Total: -32.48 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -2.01 Total: -43.52 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 0.11 Total: -8.69 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 16 Polarization: 32.23 SS G_CDS: -0.66 Total: 31.58 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.77 -6.29 -37.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330946437.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.822 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds