Wall clock time and date at job start Tue Mar 31 2020 05:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99996 * 2 1 4 4 H 1.48500 * 109.47195 * 240.00236 * 3 2 1 5 5 H 1.48498 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47084 * 119.99813 * 3 2 1 7 7 C 1.37875 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00383 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47262 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47318 * 180.02562 * 10 9 7 12 12 O 1.42092 * 110.54706 * 68.37211 * 11 10 9 13 13 O 1.42108 * 110.53914 * 291.62484 * 11 10 9 14 14 N 1.65596 * 104.45290 * 180.02562 * 11 10 9 15 15 C 1.46498 * 120.00079 * 64.99095 * 14 11 10 16 16 C 1.50702 * 109.47300 * 165.00417 * 15 14 11 17 17 N 1.29950 * 126.28481 * 269.98450 * 16 15 14 18 18 O 1.21305 * 110.24778 * 179.72419 * 17 16 15 19 19 C 1.33644 * 109.80950 * 0.46246 * 18 17 16 20 20 C 1.50703 * 126.55078 * 179.80368 * 19 18 17 21 21 F 1.39905 * 109.47157 * 269.68861 * 20 19 18 22 22 F 1.39900 * 109.47159 * 149.69162 * 20 19 18 23 23 F 1.39897 * 109.47274 * 29.68853 * 20 19 18 24 24 N 1.31128 * 106.90099 * 359.54338 * 19 18 17 25 25 H 0.97003 * 120.00328 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47188 * 60.00437 * 9 7 2 27 27 H 1.08997 * 109.47718 * 300.00294 * 9 7 2 28 28 H 1.09000 * 109.47236 * 60.00149 * 10 9 7 29 29 H 1.09002 * 109.47093 * 299.99999 * 10 9 7 30 30 H 0.96999 * 119.99951 * 245.00154 * 14 11 10 31 31 H 1.09010 * 109.47138 * 45.00780 * 15 14 11 32 32 H 1.09001 * 109.47367 * 285.00790 * 15 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 16 1.3385 -5.2330 0.0034 12 8 0.6648 -5.4205 -1.2336 13 8 0.6640 -5.4189 1.2403 14 7 2.5206 -6.3927 0.0052 15 6 3.4183 -6.5218 1.1557 16 6 4.1384 -7.8438 1.0851 17 7 3.7361 -8.9671 1.5998 18 8 4.5368 -9.8474 1.3644 19 6 5.5618 -9.3519 0.6644 20 6 6.7671 -10.1138 0.1765 21 9 7.7745 -10.0634 1.1460 22 9 7.2332 -9.5387 -1.0106 23 9 6.4126 -11.4465 -0.0587 24 7 5.3157 -8.0775 0.4782 25 1 -0.4851 0.8400 -0.0004 26 1 0.6242 -2.5575 -0.8880 27 1 0.6248 -2.5563 0.8919 28 1 2.8720 -3.6035 0.8927 29 1 2.8721 -3.6051 -0.8873 30 1 2.6187 -6.9864 -0.7556 31 1 2.8375 -6.4732 2.0770 32 1 4.1460 -5.7104 1.1417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330981540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:33 Heat of formation + Delta-G solvation = -145.725312 kcal Electronic energy + Delta-G solvation = -25234.695878 eV Core-core repulsion = 20525.778478 eV Total energy + Delta-G solvation = -4708.917400 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.049 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.05513 -48.57861 -48.54599 -46.60284 -37.46172 -36.73688 -35.64870 -35.34866 -33.96374 -33.40047 -31.23896 -28.26462 -27.70548 -25.67850 -24.47735 -22.83607 -21.77130 -19.92728 -19.76320 -19.27261 -19.18604 -18.62091 -17.80710 -17.64618 -16.85671 -16.31259 -15.60420 -15.36050 -15.31479 -14.94118 -14.91749 -14.63811 -14.62924 -14.59527 -14.56399 -14.26822 -13.60129 -13.45160 -13.26728 -12.74195 -12.56003 -12.05627 -11.93554 -11.83541 -11.74922 -11.67094 -11.11221 -11.09790 -11.03538 -10.53339 -10.44484 -10.00645 -9.69720 -9.18265 -8.54436 -6.16785 -4.22962 -0.04367 0.53122 0.77390 1.25031 2.06446 2.44145 2.91629 3.04896 3.24732 3.29939 3.31415 3.33523 3.42247 3.64250 4.09183 4.33398 4.44076 4.52074 4.78055 4.97148 5.06983 5.18476 5.27519 5.53299 5.68131 6.38543 6.70705 7.13273 7.23243 7.28854 7.75675 8.11516 8.80272 9.42255 10.94139 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.020595 B = 0.002526 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.240447 B =11082.421584 C =11879.276640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.586 4.586 11 S 2.591 3.409 12 O -0.958 6.958 13 O -0.961 6.961 14 N -1.126 6.126 15 C 0.208 3.792 16 C 0.173 3.827 17 N -0.331 5.331 18 O 0.133 5.867 19 C 0.078 3.922 20 C 0.590 3.410 21 F -0.147 7.147 22 F -0.138 7.138 23 F -0.149 7.149 24 N -0.401 5.401 25 H 0.266 0.734 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.416 0.584 31 H 0.117 0.883 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.994 -21.487 1.657 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.720 4.720 11 S 2.689 3.311 12 O -0.948 6.948 13 O -0.951 6.951 14 N -0.883 5.883 15 C 0.080 3.920 16 C -0.100 4.100 17 N -0.028 5.028 18 O 0.062 5.938 19 C -0.146 4.146 20 C 0.533 3.467 21 F -0.128 7.128 22 F -0.119 7.119 23 F -0.130 7.130 24 N -0.135 5.135 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.249 0.751 31 H 0.135 0.865 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.174 -21.100 2.135 24.966 hybrid contribution 1.405 0.692 -0.436 1.626 sum 14.579 -20.408 1.699 25.138 Atomic orbital electron populations 1.69939 1.06137 1.27414 1.49304 1.25066 0.94978 0.99577 0.94810 0.86514 0.79486 0.82449 0.78736 1.20047 1.21071 1.20045 1.20952 0.93064 0.89688 1.52523 0.91992 1.18982 0.92665 0.90443 0.99047 1.30446 1.13757 1.17391 1.10422 1.05789 0.74457 0.76541 0.74323 1.93575 1.70977 1.85213 1.45072 1.93559 1.70985 1.84921 1.45598 1.55977 1.52636 1.53269 1.26416 1.19587 0.92642 0.88120 0.91623 1.25986 0.90501 0.97484 0.96065 1.74801 1.11294 0.98615 1.18060 1.85474 1.22865 1.34071 1.51381 1.28374 0.95194 0.91020 1.00055 1.15883 0.78417 0.76321 0.76118 1.93353 1.60721 1.96012 1.62716 1.93362 1.88460 1.84302 1.45769 1.93342 1.91616 1.33751 1.94283 1.71897 1.13376 1.10692 1.17552 0.92404 0.94720 0.94698 0.86062 0.85693 0.75113 0.86533 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.52 -14.00 9.11 -34.44 -0.31 -14.31 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 10 C -0.59 -10.27 6.01 37.16 0.22 -10.04 16 11 S 2.59 42.79 5.46 -107.50 -0.59 42.21 16 12 O -0.96 -18.91 18.08 -57.54 -1.04 -19.95 16 13 O -0.96 -18.57 17.49 -57.54 -1.01 -19.58 16 14 N -1.13 -13.54 5.88 -11.65 -0.07 -13.61 16 15 C 0.21 2.14 6.75 -5.19 -0.04 2.11 16 16 C 0.17 1.83 7.61 -156.37 -1.19 0.64 16 17 N -0.33 -3.60 12.16 30.90 0.38 -3.22 16 18 O 0.13 1.19 11.30 18.10 0.20 1.39 16 19 C 0.08 0.65 7.70 -13.05 -0.10 0.54 16 20 C 0.59 3.74 3.57 36.01 0.13 3.86 16 21 F -0.15 -0.92 17.30 2.25 0.04 -0.88 16 22 F -0.14 -0.98 17.27 2.25 0.04 -0.94 16 23 F -0.15 -0.86 17.30 2.25 0.04 -0.82 16 24 N -0.40 -4.00 11.51 -9.86 -0.11 -4.11 16 25 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.12 1.81 8.14 -51.92 -0.42 1.38 16 29 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 30 H 0.42 4.45 8.61 -34.47 -0.30 4.15 16 31 H 0.12 1.16 7.69 -51.92 -0.40 0.76 16 32 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 322.14 15.07 4.85 4.85 Total: -1.00 -34.27 322.14 -5.42 -39.70 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -2.35 Total: -0.40 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.52 Total: -15.15 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.93 Total: -46.20 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -1.84 Total: -38.13 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.12 Total: -2.64 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 42.79 SS G_CDS: -0.59 Total: 42.21 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.27 -5.42 -39.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330981540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.030 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds