Wall clock time and date at job start Tue Mar 31 2020 05:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35621 * 124.93329 * 2 1 4 4 C 1.35442 * 107.13542 * 180.02562 * 3 2 1 5 5 Br 1.89096 * 127.23825 * 180.02562 * 4 3 2 6 6 C 1.41537 * 105.52804 * 0.02562 * 4 3 2 7 7 C 1.47673 * 126.46656 * 179.97438 * 6 4 3 8 8 O 1.21573 * 119.99782 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00343 * 179.97438 * 7 6 4 10 10 C 1.47583 * 134.49494 * 180.02562 * 9 7 6 11 11 C 1.53945 * 86.11541 * 204.65773 * 10 9 7 12 12 O 1.42903 * 113.74155 * 90.74233 * 11 10 9 13 13 C 1.50704 * 113.74101 * 221.93630 * 11 10 9 14 14 H 1.07996 * 119.99852 * 358.07848 * 13 11 10 15 15 C 1.37883 * 119.99641 * 178.07674 * 13 11 10 16 16 N 1.31510 * 120.00287 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99749 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47046 * 60.00259 * 17 15 13 19 19 H 1.48497 * 109.47521 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47371 * 300.00328 * 17 15 13 21 21 C 1.47935 * 134.50020 * 0.03366 * 9 7 6 22 22 N 1.28469 * 124.93759 * 180.30629 * 2 1 3 23 23 H 1.08996 * 109.47558 * 89.99791 * 1 2 3 24 24 H 1.09003 * 109.46797 * 209.99870 * 1 2 3 25 25 H 1.09006 * 109.47117 * 329.99197 * 1 2 3 26 26 H 1.08002 * 126.43076 * 0.04725 * 3 2 1 27 27 H 1.08996 * 113.76772 * 90.36065 * 10 9 7 28 28 H 1.08991 * 113.86922 * 318.97468 * 10 9 7 29 29 H 0.96700 * 114.00311 * 181.92380 * 12 11 10 30 30 H 0.96996 * 120.00241 * 179.97438 * 16 15 13 31 31 H 1.08997 * 113.86757 * 41.07474 * 21 9 7 32 32 H 1.09004 * 113.76551 * 269.58365 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2416 1.1118 0.0000 4 6 3.5312 0.6979 -0.0006 5 35 5.0809 1.7815 -0.0002 6 6 3.4751 -0.7164 -0.0015 7 6 4.6270 -1.6404 -0.0030 8 8 5.7600 -1.1995 -0.0029 9 7 4.4224 -2.9725 -0.0032 10 6 5.3059 -4.1547 -0.0040 11 6 4.1250 -4.9066 -0.6444 12 8 4.1294 -4.8748 -2.0731 13 6 3.9142 -6.2913 -0.0884 14 1 4.5838 -6.6782 0.6655 15 6 2.8665 -7.0643 -0.5422 16 7 2.0514 -6.5934 -1.4606 17 14 2.6047 -8.7804 0.1475 18 1 2.3798 -8.6959 1.6130 19 1 1.4206 -9.3992 -0.5006 20 1 3.8061 -9.6107 -0.1218 21 6 3.2221 -3.8372 -0.0030 22 7 2.2007 -1.0531 -0.0056 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5140 26 1 1.8965 2.1352 0.0007 27 1 5.5643 -4.5106 0.9932 28 1 6.1719 -4.0577 -0.6587 29 1 3.3735 -5.3208 -2.4788 30 1 1.3146 -7.1372 -1.7801 31 1 2.4248 -3.4851 -0.6575 32 1 2.8702 -4.1001 0.9946 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331492138.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:05 Heat of formation + Delta-G solvation = 45.685638 kcal Electronic energy + Delta-G solvation = -20248.067822 eV Core-core repulsion = 16872.835971 eV Total energy + Delta-G solvation = -3375.231851 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 329.016 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.59428 -39.21401 -37.13694 -33.86307 -33.60908 -32.16453 -31.80595 -29.55843 -28.79632 -27.13562 -25.22402 -25.12660 -22.34894 -21.26643 -19.86421 -18.48312 -17.49657 -16.97233 -16.35340 -16.09727 -15.34544 -14.86906 -14.49462 -14.08194 -13.87404 -13.71300 -13.25597 -12.84017 -12.77693 -12.46398 -12.20682 -11.89091 -11.50000 -11.21610 -11.04049 -11.01790 -10.84277 -10.48067 -10.23298 -10.14106 -9.51107 -9.24540 -9.12311 -8.71519 -8.70159 -8.31926 -7.73186 -6.33734 -4.43679 1.68478 1.72291 1.92745 2.58138 3.19255 3.24579 3.27280 3.57386 3.88028 4.22679 4.36561 4.58233 4.84939 4.89080 4.94326 5.16124 5.27559 5.35157 5.66987 5.97136 6.12491 6.27553 6.46999 6.56316 6.66271 6.78832 6.89460 7.18216 7.68063 7.84643 7.88749 8.50814 8.58759 8.83620 9.26886 9.49512 10.72975 Molecular weight = 329.02amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.003867 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.924076 B = 7239.115329 C = 8169.822609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.287 5.287 3 C 0.013 3.987 4 C -0.162 4.162 5 Br 0.005 6.995 6 C 0.029 3.971 7 C 0.605 3.395 8 O -0.539 6.539 9 N -0.618 5.618 10 C 0.115 3.885 11 C 0.236 3.764 12 O -0.572 6.572 13 C -0.536 4.536 14 H 0.071 0.929 15 C 0.073 3.927 16 N -0.898 5.898 17 Si 0.906 3.094 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.092 3.908 22 N -0.236 5.236 23 H 0.087 0.913 24 H 0.101 0.899 25 H 0.096 0.904 26 H 0.189 0.811 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.391 0.609 30 H 0.272 0.728 31 H 0.075 0.925 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.178 16.083 3.321 17.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.075 5.075 3 C -0.133 4.133 4 C -0.252 4.252 5 Br 0.089 6.911 6 C -0.134 4.134 7 C 0.392 3.608 8 O -0.416 6.416 9 N -0.351 5.351 10 C -0.006 4.006 11 C 0.194 3.806 12 O -0.384 6.384 13 C -0.574 4.574 14 H 0.089 0.911 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.733 3.267 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.031 4.031 22 N -0.071 5.071 23 H 0.106 0.894 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.206 0.794 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.245 0.755 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.475 16.247 3.293 17.170 hybrid contribution -0.901 -0.591 0.282 1.114 sum -5.376 15.656 3.575 16.934 Atomic orbital electron populations 1.22219 0.72605 1.05607 1.04761 1.45641 1.07996 1.02874 1.50946 1.22730 0.89338 0.94101 1.07123 1.21923 0.93118 0.93834 1.16348 1.96617 1.32942 1.63607 1.97923 1.22010 0.91396 0.92165 1.07845 1.16431 0.86078 0.80462 0.77862 1.90783 1.21998 1.76307 1.52489 1.50109 1.13226 1.02576 1.69226 1.23477 0.96254 0.80732 1.00176 1.19887 0.88861 0.91581 0.80269 1.86060 1.52427 1.80785 1.19102 1.21465 1.13173 0.99396 1.23400 0.91120 1.25052 0.94766 0.98831 0.94319 1.69405 1.17006 1.37990 1.29368 0.86416 0.77823 0.83180 0.79233 1.19943 1.21074 1.19863 1.24314 0.89855 0.87998 1.00919 1.73882 1.02483 1.12882 1.17827 0.89431 0.88070 0.88587 0.79434 0.89485 0.90917 0.75463 0.91751 0.90651 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.32 59.85 0.68 1.32 16 2 N -0.29 -3.71 3.72 -67.95 -0.25 -3.97 16 3 C 0.01 0.16 11.48 -16.87 -0.19 -0.04 16 4 C -0.16 -2.63 6.68 -39.32 -0.26 -2.89 16 5 Br 0.01 0.08 32.70 -68.01 -2.22 -2.14 16 6 C 0.03 0.56 7.08 -82.77 -0.59 -0.03 16 7 C 0.61 13.64 8.05 -12.41 -0.10 13.54 16 8 O -0.54 -12.89 16.33 5.30 0.09 -12.80 16 9 N -0.62 -14.10 3.62 -179.19 -0.65 -14.75 16 10 C 0.12 2.61 8.23 -2.97 -0.02 2.58 16 11 C 0.24 5.81 1.40 -90.84 -0.13 5.69 16 12 O -0.57 -15.11 13.49 -35.23 -0.48 -15.59 16 13 C -0.54 -13.63 8.61 -34.44 -0.30 -13.93 16 14 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 15 C 0.07 1.83 5.39 -17.82 -0.10 1.73 16 16 N -0.90 -22.93 11.20 55.43 0.62 -22.31 16 17 Si 0.91 19.56 29.54 -169.99 -5.02 14.54 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 C 0.09 2.10 7.32 -2.76 -0.02 2.08 16 22 N -0.24 -4.18 10.39 33.42 0.35 -3.83 16 23 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.10 0.36 8.13 -51.93 -0.42 -0.06 16 26 H 0.19 1.41 8.06 -52.49 -0.42 0.98 16 27 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 28 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.39 10.36 6.60 45.56 0.30 10.66 16 30 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 31 H 0.08 1.78 7.51 -51.93 -0.39 1.39 16 32 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -31.36 304.89 -6.59 -37.95 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -2.59 Total: 8.25 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -1.03 Total: 10.05 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.07 Total: -44.86 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.39 Total: -28.39 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -2.22 Total: -2.14 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.36 -6.59 -37.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331492138.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.635 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds