Wall clock time and date at job start Tue Mar 31 2020 05:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21273 * 119.99963 * 2 1 4 4 C 1.46978 * 119.99675 * 180.02562 * 2 1 3 5 5 C 1.39945 * 120.20016 * 359.72547 * 4 2 1 6 6 C 1.37768 * 119.85193 * 179.67298 * 5 4 2 7 7 C 1.38524 * 120.24846 * 0.62591 * 6 5 4 8 8 S 1.76200 * 119.79998 * 179.69112 * 7 6 5 9 9 O 1.42104 * 104.27764 * 26.05116 * 8 7 6 10 10 O 1.42098 * 104.27574 * 153.90443 * 8 7 6 11 11 C 1.81398 * 104.45207 * 269.97946 * 8 7 6 12 12 C 1.50697 * 109.47387 * 180.02562 * 11 8 7 13 13 O 1.21301 * 120.00000 * 359.97438 * 12 11 8 14 14 N 1.34771 * 120.00306 * 180.02562 * 12 11 8 15 15 C 1.37101 * 119.99990 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00280 * 359.97438 * 15 14 12 17 17 C 1.38948 * 119.99659 * 180.02562 * 15 14 12 18 18 N 1.31420 * 119.99765 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00538 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46755 * 90.00246 * 19 17 15 21 21 H 1.48497 * 109.47653 * 210.00293 * 19 17 15 22 22 H 1.48498 * 109.47058 * 330.00524 * 19 17 15 23 23 C 1.38217 * 120.40181 * 359.67318 * 7 6 5 24 24 C 1.38278 * 120.14504 * 359.97438 * 23 7 6 25 25 F 1.35104 * 120.13020 * 180.02562 * 24 23 7 26 26 H 1.09002 * 109.47152 * 240.00002 * 1 2 3 27 27 H 1.09001 * 109.46980 * 120.00102 * 1 2 3 28 28 H 1.09004 * 109.47113 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.07538 * 359.97438 * 5 4 2 30 30 H 1.07993 * 119.87737 * 180.29343 * 6 5 4 31 31 H 1.09003 * 109.46823 * 299.99818 * 11 8 7 32 32 H 1.08999 * 109.47034 * 59.99656 * 11 8 7 33 33 H 0.96998 * 120.00044 * 359.97438 * 14 12 11 34 34 H 0.97006 * 119.99316 * 179.97438 * 18 17 15 35 35 H 1.08003 * 119.93125 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 6 2.2418 -1.2729 -0.0006 5 6 1.5463 -2.4873 0.0047 6 6 2.2423 -3.6762 -0.0027 7 6 3.6275 -3.6739 -0.0022 8 16 4.5057 -5.2015 -0.0035 9 8 3.6079 -6.1213 -0.6095 10 8 5.7527 -4.8883 -0.6085 11 6 4.7313 -5.5954 1.7527 12 6 5.4800 -6.8967 1.8836 13 8 5.8269 -7.4994 0.8897 14 7 5.7633 -7.3913 3.1048 15 6 6.4440 -8.5754 3.2238 16 1 6.7529 -9.1120 2.3389 17 6 6.7356 -9.0856 4.4829 18 7 7.3886 -10.2204 4.5969 19 14 6.2008 -8.1580 6.0135 20 1 4.8450 -8.6097 6.4176 21 1 7.1603 -8.4251 7.1149 22 1 6.1717 -6.7016 5.7248 23 6 4.3250 -2.4806 -0.0012 24 6 3.6431 -1.2777 -0.0011 25 9 4.3252 -0.1115 -0.0006 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 -0.5139 -0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 0.4664 -2.4924 0.0096 30 1 1.7059 -4.6135 -0.0035 31 1 5.3001 -4.7995 2.2335 32 1 3.7569 -5.6866 2.2327 33 1 5.4856 -6.9096 3.8996 34 1 7.5924 -10.5764 5.4760 35 1 5.4050 -2.4877 -0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341379115.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:08 Heat of formation + Delta-G solvation = -148.652091 kcal Electronic energy + Delta-G solvation = -24961.194227 eV Core-core repulsion = 20774.086691 eV Total energy + Delta-G solvation = -4187.107536 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.32228 -40.33482 -38.75943 -38.65925 -37.01750 -35.81425 -34.37269 -32.89190 -32.01161 -31.17312 -30.19649 -29.92051 -25.13722 -24.76268 -23.27548 -20.78054 -20.08811 -19.44737 -18.66713 -18.20078 -17.28699 -17.12634 -16.55661 -16.32259 -15.98679 -15.83081 -15.71863 -15.23864 -15.14418 -14.98463 -14.69864 -14.42190 -13.91444 -13.59261 -13.38852 -13.06758 -12.92080 -12.75654 -12.69065 -12.42688 -12.40680 -12.27189 -11.91840 -11.81283 -11.36160 -11.22323 -10.86641 -10.77277 -10.30245 -10.18069 -10.01663 -9.85975 -9.38884 -9.14561 -8.45905 -6.53013 -4.06327 -0.45605 0.02440 0.56495 1.62619 2.78465 2.85864 2.91260 2.96517 3.02019 3.27833 3.31758 3.58328 3.78436 3.89763 3.91202 4.24927 4.27290 4.44625 4.45535 4.63106 4.75377 4.83515 4.85172 4.94196 5.13500 5.15100 5.19983 5.37011 5.38898 5.44526 5.50231 5.54581 6.13068 6.89083 7.26778 7.85224 8.24728 8.66832 9.13822 9.42051 10.58441 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.019415 B = 0.002964 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.870921 B = 9443.479613 C = 9950.297384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.388 3.612 3 O -0.436 6.436 4 C -0.164 4.164 5 C -0.066 4.066 6 C -0.049 4.049 7 C -0.612 4.612 8 S 2.536 3.464 9 O -0.914 6.914 10 O -0.915 6.915 11 C -0.633 4.633 12 C 0.458 3.542 13 O -0.574 6.574 14 N -0.560 5.560 15 C -0.314 4.314 16 H 0.127 0.873 17 C 0.048 3.952 18 N -0.864 5.864 19 Si 0.879 3.121 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.268 1.268 23 C -0.070 4.070 24 C 0.136 3.864 25 F -0.112 7.112 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.153 0.847 30 H 0.160 0.840 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.376 0.624 34 H 0.278 0.722 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.849 18.684 -3.620 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.264 3.736 3 O -0.310 6.310 4 C -0.166 4.166 5 C -0.085 4.085 6 C -0.068 4.068 7 C -0.695 4.695 8 S 2.709 3.291 9 O -0.911 6.911 10 O -0.912 6.912 11 C -0.765 4.765 12 C 0.243 3.757 13 O -0.459 6.459 14 N -0.196 5.196 15 C -0.443 4.443 16 H 0.145 0.855 17 C -0.157 4.157 18 N -0.502 5.502 19 Si 0.705 3.295 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.193 1.193 23 C -0.089 4.089 24 C 0.115 3.885 25 F -0.090 7.090 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.171 0.829 30 H 0.177 0.823 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.209 0.791 34 H 0.089 0.911 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.918 18.298 -4.826 24.097 hybrid contribution -0.560 1.374 2.104 2.574 sum -15.478 19.672 -2.722 25.179 Atomic orbital electron populations 1.22249 0.92497 1.05760 1.04947 1.22472 0.92216 0.86905 0.72006 1.90635 1.72080 1.33807 1.34479 1.21013 0.92693 0.97029 1.05846 1.21497 1.00921 0.90194 0.95883 1.21096 0.91931 1.00014 0.93729 1.31454 1.06575 1.20291 1.11183 1.04768 0.74512 0.72874 0.76938 1.93554 1.65169 1.60157 1.72203 1.93559 1.42184 1.83196 1.72261 1.30577 1.11062 1.07974 1.26860 1.18209 0.86588 0.85712 0.85238 1.90719 1.58038 1.61214 1.35942 1.42043 1.50078 1.21937 1.05515 1.19558 1.31762 0.96445 0.96494 0.85538 1.25099 0.96600 0.96111 0.97929 1.69619 1.37312 1.18162 1.25149 0.86681 0.79799 0.79741 0.83327 1.19208 1.19699 1.19319 1.21025 1.02038 0.89566 0.96292 1.17940 0.89112 0.82056 0.99375 1.91618 1.79206 1.45419 1.92799 0.88367 0.88375 0.89201 0.82918 0.82292 0.83205 0.83125 0.79074 0.91112 0.81847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.79 8.93 36.01 0.32 -0.46 16 2 C 0.39 3.34 7.22 -30.77 -0.22 3.12 16 3 O -0.44 -5.49 16.08 5.56 0.09 -5.41 16 4 C -0.16 -1.48 5.87 -105.01 -0.62 -2.10 16 5 C -0.07 -0.44 9.47 -39.11 -0.37 -0.81 16 6 C -0.05 -0.41 9.45 -39.65 -0.37 -0.79 16 7 C -0.61 -6.65 5.66 -39.48 -0.22 -6.88 16 8 S 2.54 37.72 4.29 -107.50 -0.46 37.25 16 9 O -0.91 -15.89 17.11 -57.55 -0.98 -16.87 16 10 O -0.91 -16.60 17.10 -57.55 -0.98 -17.58 16 11 C -0.63 -8.74 6.46 36.00 0.23 -8.50 16 12 C 0.46 9.85 7.80 -10.99 -0.09 9.76 16 13 O -0.57 -14.94 15.44 5.54 0.09 -14.85 16 14 N -0.56 -12.54 5.09 -10.96 -0.06 -12.59 16 15 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 16 H 0.13 3.90 7.39 -52.49 -0.39 3.51 16 17 C 0.05 1.25 5.50 -17.47 -0.10 1.15 16 18 N -0.86 -23.97 13.96 55.50 0.77 -23.19 16 19 Si 0.88 17.95 27.74 -169.99 -4.71 13.24 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.27 -4.90 6.52 56.52 0.37 -4.53 16 23 C -0.07 -0.76 9.43 -39.57 -0.37 -1.14 16 24 C 0.14 1.52 7.29 -38.86 -0.28 1.24 16 25 F -0.11 -1.45 15.55 2.25 0.04 -1.41 16 26 H 0.10 0.19 8.08 -51.93 -0.42 -0.23 16 27 H 0.10 0.21 8.09 -51.93 -0.42 -0.21 16 28 H 0.09 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.15 0.39 7.05 -52.49 -0.37 0.02 16 30 H 0.16 1.05 7.55 -52.49 -0.40 0.65 16 31 H 0.15 1.50 8.14 -51.92 -0.42 1.08 16 32 H 0.15 1.42 8.14 -51.92 -0.42 0.99 16 33 H 0.38 7.09 5.76 -40.82 -0.24 6.85 16 34 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.16 1.63 7.55 -52.48 -0.40 1.24 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -37.96 330.53 -6.54 -44.50 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.06 Total: 5.94 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.24 Total: -14.01 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.72 Total: -35.79 kcal Atomic # 8 Polarization: -52.91 SS G_CDS: -1.79 Total: -54.71 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -4.71 Total: 13.24 kcal Atomic # 16 Polarization: 37.72 SS G_CDS: -0.46 Total: 37.25 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -37.96 -6.54 -44.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341379115.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.149 kcal (2) G-P(sol) polarization free energy of solvation -37.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds