Wall clock time and date at job start Tue Mar 31 2020 05:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35598 * 125.67502 * 2 1 4 4 C 1.35503 * 108.85467 * 179.82739 * 3 2 1 5 5 Br 1.89106 * 126.07245 * 180.14218 * 4 3 2 6 6 C 1.39874 * 107.85485 * 0.42451 * 4 3 2 7 7 C 1.37641 * 125.67653 * 180.29567 * 2 1 3 8 8 C 1.46673 * 126.22131 * 0.02562 * 7 2 1 9 9 O 1.21695 * 120.00262 * 5.00142 * 8 7 2 10 10 N 1.34780 * 119.99564 * 185.00261 * 8 7 2 11 11 C 1.46504 * 119.99688 * 185.09763 * 10 8 7 12 12 C 1.50705 * 109.46957 * 179.97438 * 11 10 8 13 13 O 1.21298 * 119.99817 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00133 * 180.02562 * 12 11 10 15 15 C 1.37092 * 120.00316 * 180.02562 * 14 12 11 16 16 H 1.08003 * 119.99543 * 359.97438 * 15 14 12 17 17 C 1.38951 * 120.00486 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99703 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00154 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47192 * 90.00071 * 19 17 15 21 21 H 1.48507 * 109.47206 * 209.99762 * 19 17 15 22 22 H 1.48501 * 109.47410 * 329.99989 * 19 17 15 23 23 H 1.08994 * 109.47492 * 264.16314 * 1 2 3 24 24 H 1.08998 * 109.46995 * 144.15998 * 1 2 3 25 25 H 1.08999 * 109.47106 * 24.16658 * 1 2 3 26 26 H 1.08003 * 125.57183 * 359.96667 * 3 2 1 27 27 H 1.07997 * 126.45781 * 179.71879 * 6 4 3 28 28 H 0.96999 * 120.00246 * 5.09735 * 10 8 7 29 29 H 1.08992 * 109.47197 * 299.99680 * 11 10 8 30 30 H 1.09004 * 109.47063 * 60.00279 * 11 10 8 31 31 H 0.96996 * 119.99684 * 359.97438 * 14 12 11 32 32 H 0.97000 * 120.00425 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2558 1.1015 0.0000 4 6 3.5529 0.7094 0.0039 5 35 5.0610 1.8503 0.0093 6 6 3.5781 -0.6891 -0.0035 7 6 2.2678 -1.1181 -0.0058 8 6 1.8120 -2.5122 -0.0135 9 8 0.6251 -2.7639 -0.1072 10 7 2.7079 -3.5145 0.0832 11 6 2.2658 -4.9061 -0.0366 12 6 3.4524 -5.8242 0.1065 13 8 4.5585 -5.3614 0.2899 14 7 3.2846 -7.1592 0.0295 15 6 4.3639 -7.9944 0.1602 16 1 5.3487 -7.5824 0.3243 17 6 4.1909 -9.3708 0.0814 18 7 2.9926 -9.8721 -0.1179 19 14 5.6616 -10.5087 0.2587 20 1 5.8435 -10.8633 1.6892 21 1 5.4298 -11.7442 -0.5319 22 1 6.8809 -9.8233 -0.2402 23 1 -0.3634 -0.1045 1.0223 24 1 -0.3633 -0.8331 -0.6017 25 1 -0.3633 0.9376 -0.4207 26 1 1.9086 2.1242 -0.0005 27 1 4.4582 -1.3150 -0.0070 28 1 3.6453 -3.3145 0.2321 29 1 1.5399 -5.1254 0.7463 30 1 1.8049 -5.0582 -1.0126 31 1 2.4001 -7.5291 -0.1176 32 1 2.8717 -10.8329 -0.1725 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343535324.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:36 Heat of formation + Delta-G solvation = -23.421807 kcal Electronic energy + Delta-G solvation = -19150.806418 eV Core-core repulsion = 15772.577844 eV Total energy + Delta-G solvation = -3378.228574 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 329.016 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.63770 -39.23983 -38.02707 -34.65498 -33.91298 -33.26101 -31.44291 -31.04099 -29.52884 -27.39666 -26.44287 -24.64293 -22.50036 -20.55405 -19.87947 -19.40909 -18.26105 -17.82928 -16.27426 -15.95785 -15.59312 -15.30613 -15.03662 -14.50099 -14.20152 -13.78819 -13.74872 -13.57592 -13.34716 -12.95918 -12.83131 -12.34638 -12.16725 -12.00558 -11.64902 -11.13830 -10.98933 -10.46962 -10.40932 -10.32963 -9.95342 -9.65700 -8.99593 -8.83854 -8.67153 -8.40458 -8.12551 -6.53623 -3.95633 1.28566 1.57871 2.20768 2.51351 3.10666 3.21499 3.26296 3.31763 3.41670 3.71049 4.09819 4.54978 4.62771 4.77946 4.81811 5.00444 5.06208 5.14804 5.33409 5.47511 5.71952 5.83609 5.88901 6.01903 6.25931 6.53719 6.57127 6.81467 7.44415 7.67303 7.89258 8.26084 8.42525 9.02439 9.36270 9.83942 10.63222 Molecular weight = 329.02amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.002614 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.330385 B =10710.805767 C =12124.685324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.404 5.404 3 C 0.050 3.950 4 C -0.177 4.177 5 Br -0.032 7.032 6 C -0.110 4.110 7 C -0.034 4.034 8 C 0.587 3.413 9 O -0.555 6.555 10 N -0.692 5.692 11 C 0.111 3.889 12 C 0.427 3.573 13 O -0.595 6.595 14 N -0.548 5.548 15 C -0.305 4.305 16 H 0.106 0.894 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.268 1.268 23 H 0.080 0.920 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.178 0.822 27 H 0.157 0.843 28 H 0.414 0.586 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.396 0.604 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.402 23.117 -0.308 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.076 5.076 3 C -0.089 4.089 4 C -0.263 4.263 5 Br 0.052 6.948 6 C -0.137 4.137 7 C -0.148 4.148 8 C 0.374 3.626 9 O -0.436 6.436 10 N -0.345 5.345 11 C -0.016 4.016 12 C 0.212 3.788 13 O -0.482 6.482 14 N -0.182 5.182 15 C -0.435 4.435 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.192 1.192 23 H 0.098 0.902 24 H 0.124 0.876 25 H 0.104 0.896 26 H 0.195 0.805 27 H 0.175 0.825 28 H 0.253 0.747 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.230 0.770 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.412 23.349 -0.287 23.599 hybrid contribution 0.196 -0.977 0.070 0.999 sum -3.216 22.372 -0.217 22.603 Atomic orbital electron populations 1.22345 0.75208 1.05136 1.04695 1.43888 1.07166 1.04605 1.51926 1.21824 0.88901 0.92019 1.06140 1.20922 0.91765 0.94252 1.19342 1.96608 1.36913 1.62918 1.98331 1.21363 0.95541 0.93204 1.03548 1.20081 0.89728 0.87968 1.16990 1.16795 0.85584 0.83182 0.77030 1.90775 1.16043 1.84838 1.51926 1.45357 1.12379 1.05038 1.71720 1.20999 0.96918 0.80453 1.03244 1.19686 0.89521 0.83636 0.85915 1.90512 1.25869 1.75471 1.56322 1.41778 1.11276 1.03888 1.61288 1.19744 0.89793 0.86995 1.46929 0.87596 1.25329 0.98059 0.97583 0.96708 1.69612 1.21543 1.13967 1.48358 0.85807 0.80790 0.79020 0.78394 1.20243 1.20799 1.19250 0.90158 0.87575 0.89628 0.80510 0.82527 0.74656 0.89484 0.89584 0.77031 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 10.49 59.85 0.63 1.19 16 2 N -0.40 -4.50 3.16 -120.21 -0.38 -4.88 16 3 C 0.05 0.49 11.33 -16.86 -0.19 0.30 16 4 C -0.18 -2.03 6.53 -39.95 -0.26 -2.29 16 5 Br -0.03 -0.33 34.08 -68.01 -2.32 -2.64 16 6 C -0.11 -1.41 10.33 -39.10 -0.40 -1.81 16 7 C -0.03 -0.46 6.88 -81.98 -0.56 -1.02 16 8 C 0.59 9.32 7.77 -12.85 -0.10 9.22 16 9 O -0.56 -9.71 14.78 5.19 0.08 -9.63 16 10 N -0.69 -11.47 5.50 -62.80 -0.35 -11.81 16 11 C 0.11 1.99 6.16 -5.19 -0.03 1.96 16 12 C 0.43 9.60 7.85 -10.98 -0.09 9.51 16 13 O -0.60 -15.01 15.24 5.54 0.08 -14.92 16 14 N -0.55 -13.34 5.29 -10.96 -0.06 -13.40 16 15 C -0.31 -8.20 9.68 -14.94 -0.14 -8.34 16 16 H 0.11 2.97 7.16 -52.48 -0.38 2.59 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 18 N -0.89 -23.63 13.05 55.50 0.72 -22.91 16 19 Si 0.93 20.37 29.55 -169.99 -5.02 15.35 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.11 1.09 6.54 -51.93 -0.34 0.75 16 25 H 0.09 0.44 8.12 -51.93 -0.42 0.02 16 26 H 0.18 1.12 8.06 -52.48 -0.42 0.70 16 27 H 0.16 1.92 7.48 -52.49 -0.39 1.53 16 28 H 0.41 6.84 6.38 -40.82 -0.26 6.58 16 29 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.40 9.24 7.90 -40.82 -0.32 8.92 16 32 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 308.88 15.07 4.65 4.65 Total: -1.00 -30.89 308.88 -6.77 -37.67 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -2.94 Total: 13.24 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -1.25 Total: 9.30 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.06 Total: -53.01 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.16 Total: -24.55 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 35 Polarization: -0.33 SS G_CDS: -2.32 Total: -2.64 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.89 -6.77 -37.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343535324.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.246 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds