Wall clock time and date at job start Tue Mar 31 2020 04:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99670 * 2 1 4 4 C 1.46897 * 110.99522 * 123.95084 * 2 1 3 5 5 C 1.53000 * 109.46790 * 170.00011 * 4 2 1 6 6 C 1.52999 * 109.47378 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.47304 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00197 * 270.00168 * 7 6 5 9 9 C 1.50692 * 109.47199 * 269.99995 * 8 7 6 10 10 H 1.08003 * 120.00165 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00110 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00073 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00283 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46914 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46864 * 120.00241 * 13 11 9 16 16 H 1.48495 * 109.47128 * 240.00314 * 13 11 9 17 17 C 1.34774 * 119.99553 * 90.00596 * 7 6 5 18 18 O 1.21282 * 120.00315 * 359.97438 * 17 7 6 19 19 C 1.50703 * 119.99840 * 180.02562 * 17 7 6 20 20 O 1.42896 * 109.47097 * 179.97438 * 19 17 7 21 21 C 1.42899 * 114.00352 * 179.97438 * 20 19 17 22 22 C 1.53175 * 109.54545 * 269.56219 * 21 20 19 23 23 C 1.53094 * 109.16661 * 183.14980 * 22 21 20 24 24 O 1.42898 * 109.41211 * 57.60371 * 23 22 21 25 25 C 1.42897 * 114.10001 * 298.84343 * 24 23 22 26 26 C 1.53089 * 109.41656 * 61.16248 * 25 24 23 27 27 H 1.08998 * 109.47652 * 296.04996 * 1 2 3 28 28 H 1.09005 * 109.47127 * 56.05082 * 1 2 3 29 29 H 1.09001 * 109.46936 * 176.04485 * 1 2 3 30 30 H 1.09004 * 109.46443 * 183.95263 * 3 2 1 31 31 H 1.08994 * 109.47028 * 303.94972 * 3 2 1 32 32 H 1.08992 * 109.47014 * 63.95467 * 3 2 1 33 33 H 1.09000 * 109.47174 * 50.00562 * 4 2 1 34 34 H 1.08998 * 109.47460 * 289.99679 * 4 2 1 35 35 H 1.09000 * 109.47275 * 60.00065 * 5 4 2 36 36 H 1.09003 * 109.47392 * 300.00526 * 5 4 2 37 37 H 1.09000 * 109.46714 * 60.00472 * 6 5 4 38 38 H 1.08995 * 109.47605 * 300.00382 * 6 5 4 39 39 H 1.08995 * 109.46818 * 30.00423 * 8 7 6 40 40 H 1.08995 * 109.46868 * 149.99999 * 8 7 6 41 41 H 0.96993 * 119.99932 * 179.97438 * 12 11 9 42 42 H 1.09000 * 109.47010 * 59.99791 * 19 17 7 43 43 H 1.09001 * 109.46884 * 299.99694 * 19 17 7 44 44 H 1.09004 * 109.61153 * 29.77680 * 21 20 19 45 45 H 1.09004 * 109.52259 * 303.05246 * 22 21 20 46 46 H 1.09006 * 109.52330 * 63.24079 * 22 21 20 47 47 H 1.09006 * 109.47665 * 297.62062 * 23 22 21 48 48 H 1.08993 * 109.47955 * 177.58818 * 23 22 21 49 49 H 1.09002 * 109.48425 * 301.17758 * 25 24 23 50 50 H 1.09001 * 109.49443 * 181.15303 * 25 24 23 51 51 H 1.08997 * 109.52675 * 182.48845 * 26 25 24 52 52 H 1.08995 * 109.52428 * 62.29514 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9953 -0.7659 1.1376 5 6 3.5043 -0.9553 0.9704 6 6 4.0528 -1.7525 2.1556 7 7 5.4976 -1.9344 1.9951 8 6 6.0139 -3.1061 1.2833 9 6 6.2356 -4.2307 2.2615 10 1 6.0137 -4.0872 3.3087 11 6 6.7207 -5.4433 1.8195 12 7 6.9904 -5.6183 0.5442 13 14 6.9949 -6.8377 3.0320 14 1 6.6168 -6.3889 4.3962 15 1 6.1585 -8.0019 2.6447 16 1 8.4269 -7.2307 3.0188 17 6 6.3518 -1.0237 2.5026 18 8 5.9244 -0.0535 3.0915 19 6 7.8380 -1.2104 2.3371 20 8 8.5266 -0.1216 2.9553 21 6 9.9499 -0.2022 2.8556 22 6 10.5066 -0.9557 4.0674 23 6 12.0357 -0.9686 3.9922 24 8 12.5200 0.3748 3.9399 25 6 12.0702 1.1133 2.8023 26 6 10.5426 1.2100 2.8297 27 1 -0.3634 0.4513 0.9232 28 1 -0.3634 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0708 31 1 1.5898 1.9163 -0.8524 32 1 1.7043 1.8723 0.9232 33 1 1.5089 -1.7406 1.1756 34 1 1.7975 -0.2247 2.0628 35 1 3.9909 0.0193 0.9324 36 1 3.7023 -1.4965 0.0452 37 1 3.5664 -2.7272 2.1940 38 1 3.8549 -1.2110 3.0806 39 1 5.2933 -3.4186 0.5275 40 1 6.9581 -2.8518 0.8019 41 1 7.3320 -6.4712 0.2334 42 1 8.0845 -1.2401 1.2757 43 1 8.1411 -2.1462 2.8068 44 1 10.2233 -0.7293 1.9415 45 1 10.1913 -0.4560 4.9834 46 1 10.1330 -1.9797 4.0629 47 1 12.3510 -1.5039 3.0965 48 1 12.4388 -1.4663 4.8741 49 1 12.3859 0.6054 1.8910 50 1 12.4983 2.1155 2.8267 51 1 10.1947 1.7347 1.9400 52 1 10.2279 1.7534 3.7206 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343710171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:56 Heat of formation + Delta-G solvation = -132.997803 kcal Electronic energy + Delta-G solvation = -29173.387582 eV Core-core repulsion = 25172.884246 eV Total energy + Delta-G solvation = -4000.503336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.69787 -39.07230 -37.63406 -36.93648 -35.13910 -33.00848 -32.41625 -31.57723 -31.18276 -27.98035 -27.58230 -27.37343 -25.43999 -24.11942 -23.61600 -23.04968 -22.31952 -20.63903 -20.40273 -18.50478 -17.10996 -16.72253 -16.18818 -16.11914 -16.04678 -15.56946 -15.38399 -15.31554 -14.92609 -14.85896 -14.55492 -14.45401 -13.98525 -13.85047 -13.45848 -13.13694 -12.93882 -12.45784 -12.42281 -12.29929 -12.15120 -12.08365 -11.79299 -11.69937 -11.44869 -11.39579 -11.31962 -11.23352 -11.16702 -10.92664 -10.86100 -10.75356 -10.38831 -10.28650 -10.11968 -9.79189 -9.76739 -9.29160 -9.00205 -8.62519 -8.34800 -7.77684 -6.25767 -4.33943 3.16103 3.25160 3.27342 3.35002 3.36570 3.78129 3.98017 4.23199 4.35755 4.73246 4.80431 4.91893 5.05571 5.07776 5.10036 5.14252 5.15005 5.28169 5.33808 5.35910 5.38291 5.49761 5.56121 5.57062 5.61446 5.63784 5.67252 5.70903 5.77738 5.78892 5.80983 5.91191 5.94039 5.98058 6.01011 6.15612 6.16392 6.22990 6.46445 6.60043 6.72307 7.03790 7.05107 7.07795 7.08874 7.34605 7.54275 7.69565 7.97357 8.26351 8.72595 8.98003 9.34908 10.80714 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.007621 B = 0.003733 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3673.067190 B = 7499.033878 C =10632.085100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.125 3.875 7 N -0.593 5.593 8 C 0.235 3.765 9 C -0.541 4.541 10 H 0.062 0.938 11 C 0.066 3.934 12 N -0.890 5.890 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.520 3.480 18 O -0.556 6.556 19 C 0.048 3.952 20 O -0.360 6.360 21 C 0.088 3.912 22 C -0.181 4.181 23 C 0.064 3.936 24 O -0.385 6.385 25 C 0.065 3.935 26 C -0.152 4.152 27 H 0.022 0.978 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.036 0.964 41 H 0.265 0.735 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.052 0.948 48 H 0.096 0.904 49 H 0.051 0.949 50 H 0.097 0.903 51 H 0.079 0.921 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 9.911 -0.132 9.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.069 4.069 5 C -0.168 4.168 6 C 0.001 3.999 7 N -0.325 5.325 8 C 0.115 3.885 9 C -0.579 4.579 10 H 0.081 0.919 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.722 3.278 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.208 1.208 17 C 0.307 3.693 18 O -0.436 6.436 19 C -0.031 4.031 20 O -0.278 6.278 21 C 0.030 3.970 22 C -0.219 4.219 23 C -0.013 4.013 24 O -0.304 6.304 25 C -0.012 4.012 26 C -0.190 4.190 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.070 0.930 48 H 0.114 0.886 49 H 0.070 0.930 50 H 0.115 0.885 51 H 0.098 0.902 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.985 10.261 -0.167 10.309 hybrid contribution -0.249 -1.060 0.857 1.386 sum 0.736 9.201 0.690 9.256 Atomic orbital electron populations 1.22369 0.87663 1.02168 1.00135 1.61976 1.07493 1.13982 1.43730 1.22426 1.01494 0.88686 1.00011 1.22079 0.96001 0.98021 0.90846 1.21950 0.93735 1.01153 0.99979 1.21192 0.80971 1.00189 0.97572 1.48107 1.05176 1.24025 1.55180 1.19472 0.95334 0.81397 0.92251 1.21549 1.44586 0.96838 0.94971 0.91940 1.24942 0.94984 0.98508 0.95274 1.69930 1.43991 1.25198 1.13674 0.86483 0.77992 0.81940 0.81367 1.19603 1.20748 1.20788 1.20015 0.87935 0.82511 0.78843 1.90612 1.79192 1.30666 1.43117 1.22325 0.91208 0.91211 0.98326 1.87987 1.16577 1.45099 1.78137 1.22065 0.81719 0.96067 0.97155 1.22753 0.96282 1.02398 1.00460 1.22571 0.92994 0.83465 1.02224 1.87910 1.71959 1.24889 1.45615 1.22568 0.92945 0.96934 0.88756 1.22274 0.95621 0.96827 1.04253 0.95901 0.91629 0.91349 0.90855 0.91769 0.95760 0.90587 0.94805 0.91872 0.90841 0.90257 0.91162 0.94204 0.94657 0.92489 0.90743 0.89114 0.91932 0.90103 0.90106 0.92961 0.88578 0.93034 0.88480 0.90211 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.57 60.07 0.57 0.84 16 2 N -0.55 -7.18 5.02 -251.26 -1.26 -8.44 16 3 C 0.02 0.27 9.32 60.07 0.56 0.83 16 4 C 0.06 0.81 4.96 -3.83 -0.02 0.79 16 5 C -0.13 -2.08 5.46 -26.73 -0.15 -2.23 16 6 C 0.12 2.27 5.41 -4.04 -0.02 2.25 16 7 N -0.59 -12.32 2.46 -175.07 -0.43 -12.75 16 8 C 0.24 5.38 4.97 -5.20 -0.03 5.35 16 9 C -0.54 -13.57 9.28 -34.45 -0.32 -13.89 16 10 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 11 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -23.72 13.29 55.43 0.74 -22.98 16 13 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 16 14 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 C 0.52 11.12 7.75 -10.98 -0.09 11.03 16 18 O -0.56 -13.17 16.08 -14.35 -0.23 -13.40 16 19 C 0.05 0.92 4.79 36.01 0.17 1.09 16 20 O -0.36 -6.60 9.53 -55.14 -0.53 -7.12 16 21 C 0.09 1.27 2.70 -26.55 -0.07 1.19 16 22 C -0.18 -2.42 5.76 -26.59 -0.15 -2.57 16 23 C 0.06 0.73 6.84 37.21 0.25 0.99 16 24 O -0.38 -4.80 10.76 -35.23 -0.38 -5.18 16 25 C 0.06 0.68 6.84 37.20 0.25 0.93 16 26 C -0.15 -1.85 5.79 -26.59 -0.15 -2.01 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.61 8.12 -51.93 -0.42 0.18 16 29 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 30 H 0.07 0.95 6.47 -51.93 -0.34 0.62 16 31 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 34 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.06 1.09 6.55 -51.93 -0.34 0.75 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.41 8.07 -51.93 -0.42 1.00 16 38 H 0.07 1.31 7.42 -51.93 -0.39 0.92 16 39 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 40 H 0.04 0.82 6.44 -51.93 -0.33 0.49 16 41 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 42 H 0.07 1.31 7.35 -51.93 -0.38 0.93 16 43 H 0.09 1.76 7.85 -51.93 -0.41 1.35 16 44 H 0.06 0.84 7.79 -51.93 -0.40 0.44 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.08 1.11 7.99 -51.93 -0.42 0.69 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 414.99 15.07 6.25 6.25 Total: -1.00 -29.93 414.99 -9.86 -39.79 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -9.72 Total: 2.72 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 0.72 Total: 6.19 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.95 Total: -44.17 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -1.14 Total: -25.70 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -29.93 -9.86 -39.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343710171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.208 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds