Wall clock time and date at job start Tue Mar 31 2020 04:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.46901 * 110.99975 * 123.94949 * 2 1 3 5 5 C 1.53000 * 109.46769 * 66.05138 * 4 2 1 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47299 * 179.97438 * 6 5 4 8 8 C 1.46508 * 120.00066 * 89.99461 * 7 6 5 9 9 C 1.50695 * 109.46789 * 90.00448 * 8 7 6 10 10 H 1.07994 * 120.00312 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99713 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99673 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00256 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47220 * 89.99273 * 13 11 9 15 15 H 1.48495 * 109.47442 * 209.99531 * 13 11 9 16 16 H 1.48504 * 109.47083 * 329.99716 * 13 11 9 17 17 C 1.34774 * 120.00040 * 269.99881 * 7 6 5 18 18 O 1.21278 * 119.99851 * 359.97438 * 17 7 6 19 19 C 1.50701 * 120.00270 * 179.97438 * 17 7 6 20 20 O 1.42899 * 109.47347 * 179.97438 * 19 17 7 21 21 C 1.42895 * 114.00167 * 179.97438 * 20 19 17 22 22 C 1.53001 * 109.47296 * 179.97438 * 21 20 19 23 23 H 1.08998 * 110.74894 * 57.01943 * 22 21 20 24 24 C 1.55304 * 110.85072 * 180.71897 * 22 21 20 25 25 C 1.54939 * 100.94550 * 152.32285 * 24 22 21 26 26 O 1.43654 * 105.13613 * 323.55823 * 25 24 22 27 27 C 1.43234 * 109.96860 * 24.42325 * 26 25 24 28 28 H 1.09001 * 109.47121 * 296.04690 * 1 2 3 29 29 H 1.09005 * 109.47342 * 56.04784 * 1 2 3 30 30 H 1.08999 * 109.46894 * 176.04703 * 1 2 3 31 31 H 1.08998 * 109.46995 * 183.95294 * 3 2 1 32 32 H 1.09001 * 109.46977 * 303.95046 * 3 2 1 33 33 H 1.08998 * 109.47089 * 63.95199 * 3 2 1 34 34 H 1.09002 * 109.47401 * 306.04845 * 4 2 1 35 35 H 1.09001 * 109.46874 * 186.04858 * 4 2 1 36 36 H 1.09001 * 109.47194 * 299.99524 * 5 4 2 37 37 H 1.08992 * 109.47399 * 59.99697 * 5 4 2 38 38 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 39 39 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 40 40 H 1.08998 * 109.46959 * 210.00468 * 8 7 6 41 41 H 1.09001 * 109.46634 * 329.99962 * 8 7 6 42 42 H 0.97013 * 119.99369 * 180.02562 * 12 11 9 43 43 H 1.09004 * 109.46922 * 300.00091 * 19 17 7 44 44 H 1.08999 * 109.47119 * 60.00072 * 19 17 7 45 45 H 1.08993 * 109.47474 * 300.00369 * 21 20 19 46 46 H 1.08999 * 109.46801 * 60.00311 * 21 20 19 47 47 H 1.08999 * 111.12289 * 270.24644 * 24 22 21 48 48 H 1.09002 * 111.11954 * 34.40347 * 24 22 21 49 49 H 1.08994 * 110.31379 * 204.64084 * 25 24 22 50 50 H 1.08996 * 110.39426 * 82.51165 * 25 24 22 51 51 H 1.09007 * 109.82920 * 238.77505 * 27 26 25 52 52 H 1.09002 * 109.89888 * 117.85140 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6315 -2.2425 0.9704 6 6 2.1793 -3.0402 2.1556 7 7 1.8303 -4.4540 1.9958 8 6 2.7384 -5.3567 1.2837 9 6 3.7089 -5.9671 2.2618 10 1 3.6550 -5.7082 3.3088 11 6 4.6663 -6.8552 1.8196 12 7 4.7321 -7.1701 0.5443 13 14 5.8698 -7.6114 3.0316 14 1 5.3030 -8.8742 3.5696 15 1 7.1526 -7.8991 2.3413 16 1 6.1104 -6.6619 4.1478 17 6 0.6739 -4.9243 2.5038 18 8 -0.0776 -4.1771 3.0935 19 6 0.3147 -6.3785 2.3389 20 8 -0.9480 -6.6305 2.9588 21 6 -1.3841 -7.9876 2.8587 22 6 -2.7387 -8.1406 3.5535 23 1 -3.4721 -7.4580 3.1242 24 6 -3.2350 -9.6103 3.4794 25 6 -4.1128 -9.6890 4.7537 26 8 -3.4293 -8.8869 5.7300 27 6 -2.6042 -7.9166 5.0750 28 1 -0.3633 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0827 1.3433 -0.0708 32 1 1.5898 1.9163 -0.8525 33 1 1.7043 1.8724 0.9233 34 1 1.5611 -0.3871 2.0629 35 1 3.0797 -0.6609 1.1757 36 1 0.5472 -2.3475 0.9324 37 1 2.0658 -2.6213 0.0452 38 1 3.2635 -2.9354 2.1940 39 1 1.7446 -2.6613 3.0806 40 1 2.1619 -6.1469 0.8028 41 1 3.2883 -4.7965 0.5275 42 1 5.4056 -7.7953 0.2333 43 1 0.2534 -6.6196 1.2776 44 1 1.0794 -6.9972 2.8085 45 1 -1.4811 -8.2616 1.8083 46 1 -0.6544 -8.6400 3.3385 47 1 -3.8297 -9.7793 2.5816 48 1 -2.4008 -10.3098 3.5332 49 1 -4.1889 -10.7204 5.0976 50 1 -5.1048 -9.2821 4.5574 51 1 -1.5655 -8.0495 5.3780 52 1 -2.9384 -6.9114 5.3318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344372519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:03 Heat of formation + Delta-G solvation = -130.065427 kcal Electronic energy + Delta-G solvation = -28761.162981 eV Core-core repulsion = 24760.786802 eV Total energy + Delta-G solvation = -4000.376178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.64820 -39.19502 -37.66898 -37.05084 -35.13598 -33.06881 -32.84328 -31.61402 -29.75368 -27.96367 -27.58166 -27.37315 -25.70087 -24.87961 -23.04231 -22.52842 -22.24998 -20.76884 -20.62663 -18.49779 -17.14653 -16.77284 -16.56003 -16.23324 -15.84004 -15.57640 -15.49713 -15.36792 -14.92814 -14.74543 -14.61628 -14.46652 -14.06156 -13.73500 -13.40855 -13.30119 -12.85464 -12.54878 -12.40048 -12.21922 -11.97221 -11.80714 -11.78676 -11.73460 -11.67142 -11.46881 -11.33794 -11.24891 -11.22216 -10.94392 -10.89046 -10.81624 -10.74857 -10.27850 -10.11587 -9.80366 -9.57184 -9.39999 -9.01683 -8.61310 -8.34572 -7.77622 -6.24814 -4.33053 3.18450 3.25906 3.27069 3.33483 3.35933 3.80032 3.97275 4.21181 4.30227 4.40372 4.74225 4.85338 5.06032 5.08708 5.09188 5.13037 5.15437 5.26060 5.28583 5.37754 5.38822 5.45505 5.53530 5.55392 5.59980 5.63864 5.68101 5.70462 5.73069 5.76165 5.78930 5.79553 5.91111 5.94122 5.96950 6.01355 6.11448 6.16722 6.46570 6.60345 6.72634 6.91280 7.03981 7.05154 7.08734 7.29730 7.52878 7.70278 7.98067 8.26520 8.73018 8.97811 9.35757 10.81568 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.007001 B = 0.003500 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3998.184161 B = 7998.783637 C =11334.967466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.129 4.129 6 C 0.125 3.875 7 N -0.593 5.593 8 C 0.236 3.764 9 C -0.542 4.542 10 H 0.062 0.938 11 C 0.066 3.934 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.520 3.480 18 O -0.557 6.557 19 C 0.050 3.950 20 O -0.369 6.369 21 C 0.071 3.929 22 C -0.118 4.118 23 H 0.093 0.907 24 C -0.150 4.150 25 C 0.052 3.948 26 O -0.389 6.389 27 C 0.059 3.941 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.036 0.964 41 H 0.040 0.960 42 H 0.266 0.734 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.059 0.941 51 H 0.074 0.926 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.072 2.692 0.046 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.168 4.168 6 C 0.001 3.999 7 N -0.325 5.325 8 C 0.116 3.884 9 C -0.581 4.581 10 H 0.080 0.920 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.197 1.197 17 C 0.307 3.693 18 O -0.436 6.436 19 C -0.029 4.029 20 O -0.287 6.287 21 C -0.006 4.006 22 C -0.137 4.137 23 H 0.111 0.889 24 C -0.188 4.188 25 C -0.024 4.024 26 O -0.309 6.309 27 C -0.017 4.017 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.110 0.890 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.078 0.922 51 H 0.093 0.907 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.301 2.865 0.090 11.659 hybrid contribution 0.832 -0.320 0.746 1.163 sum -10.469 2.545 0.836 10.806 Atomic orbital electron populations 1.22427 0.87503 1.02677 1.00006 1.61977 1.08032 1.13431 1.43731 1.22368 1.00804 0.89031 1.00132 1.22081 1.00116 0.93909 0.90843 1.21948 1.01595 0.93280 0.99980 1.21194 1.00307 0.80849 0.97576 1.48108 1.19706 1.09515 1.55149 1.19472 0.88272 0.88438 0.92233 1.21514 1.15407 1.26198 0.94959 0.91976 1.24941 0.97289 0.96184 0.95282 1.69927 1.35020 1.34158 1.13669 0.86521 0.80433 0.79626 0.81082 1.20461 1.21011 1.19720 1.20002 0.81425 0.89012 0.78858 1.90611 1.50819 1.59072 1.43107 1.22277 0.86428 0.95687 0.98551 1.87914 1.36345 1.26182 1.78283 1.22418 0.94343 0.84394 0.99460 1.22689 0.97527 0.97042 0.96434 0.88850 1.23272 1.00439 0.95964 0.99114 1.23325 0.95375 0.95831 0.87886 1.88396 1.61741 1.48831 1.31894 1.23173 0.95480 0.92525 0.90534 0.95764 0.91778 0.90857 0.91349 0.91634 0.95902 0.94804 0.90589 0.91876 0.90842 0.90247 0.91150 0.94636 0.94210 0.92443 0.90654 0.88993 0.92808 0.92719 0.89603 0.89927 0.89820 0.92245 0.90749 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.32 60.07 0.56 0.83 16 2 N -0.55 -7.15 5.02 -251.25 -1.26 -8.41 16 3 C 0.03 0.26 9.57 60.07 0.57 0.84 16 4 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 5 C -0.13 -2.07 5.46 -26.73 -0.15 -2.22 16 6 C 0.12 2.26 5.41 -4.04 -0.02 2.24 16 7 N -0.59 -12.25 2.46 -175.06 -0.43 -12.68 16 8 C 0.24 5.38 4.97 -5.19 -0.03 5.35 16 9 C -0.54 -13.62 9.28 -34.44 -0.32 -13.94 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -23.74 13.29 55.43 0.74 -23.00 16 13 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 C 0.52 11.00 7.75 -10.99 -0.09 10.91 16 18 O -0.56 -13.00 16.08 -14.35 -0.23 -13.23 16 19 C 0.05 0.93 4.97 36.01 0.18 1.11 16 20 O -0.37 -6.53 9.72 -55.14 -0.54 -7.07 16 21 C 0.07 0.96 5.25 37.16 0.20 1.15 16 22 C -0.12 -1.40 3.29 -88.67 -0.29 -1.69 16 23 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 24 C -0.15 -1.38 6.62 -24.49 -0.16 -1.54 16 25 C 0.05 0.51 7.78 38.18 0.30 0.81 16 26 O -0.39 -5.22 11.36 -35.23 -0.40 -5.62 16 27 C 0.06 0.79 7.26 37.88 0.27 1.06 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.07 0.95 6.47 -51.93 -0.34 0.61 16 31 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 32 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.08 0.99 8.06 -51.93 -0.42 0.57 16 36 H 0.06 1.08 6.55 -51.93 -0.34 0.74 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.08 1.41 8.07 -51.93 -0.42 1.00 16 39 H 0.07 1.30 7.42 -51.93 -0.39 0.92 16 40 H 0.04 0.83 6.44 -51.93 -0.33 0.49 16 41 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 42 H 0.27 6.77 8.31 -40.81 -0.34 6.43 16 43 H 0.08 1.30 7.40 -51.93 -0.38 0.92 16 44 H 0.09 1.76 8.00 -51.93 -0.42 1.35 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 47 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 49 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.07 1.04 7.76 -51.92 -0.40 0.64 16 52 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 418.36 15.07 6.30 6.30 Total: -1.00 -29.93 418.36 -9.65 -39.58 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -9.73 Total: 1.82 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 0.91 Total: 7.30 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -0.95 Total: -44.09 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -1.17 Total: -25.92 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -29.93 -9.65 -39.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344372519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.486 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds