Wall clock time and date at job start Tue Mar 31 2020 04:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 110.99625 * 2 1 4 4 C 1.46901 * 110.99892 * 123.95294 * 2 1 3 5 5 C 1.52998 * 109.46713 * 170.00322 * 4 2 1 6 6 C 1.53009 * 109.46920 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47238 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00129 * 270.00499 * 7 6 5 9 9 C 1.50699 * 109.46959 * 269.99625 * 8 7 6 10 10 H 1.08000 * 119.99828 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00072 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00151 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99788 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47075 * 90.00039 * 13 11 9 15 15 H 1.48506 * 109.46874 * 209.99805 * 13 11 9 16 16 H 1.48500 * 109.47233 * 329.99819 * 13 11 9 17 17 C 1.34777 * 119.99525 * 90.00006 * 7 6 5 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 7 6 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 7 6 20 20 O 1.42899 * 109.47143 * 180.27800 * 19 17 7 21 21 C 1.42899 * 114.00265 * 179.97438 * 20 19 17 22 22 C 1.52996 * 109.47336 * 180.02562 * 21 20 19 23 23 H 1.09006 * 110.80525 * 308.62965 * 22 21 20 24 24 C 1.54812 * 110.90751 * 185.00546 * 22 21 20 25 25 C 1.54107 * 104.18608 * 220.91997 * 24 22 21 26 26 O 1.43741 * 107.29090 * 357.96976 * 25 24 22 27 27 C 1.44379 * 106.97904 * 26.51268 * 26 25 24 28 28 H 1.08998 * 109.47262 * 296.04656 * 1 2 3 29 29 H 1.09000 * 109.47374 * 56.04922 * 1 2 3 30 30 H 1.09002 * 109.46686 * 176.04395 * 1 2 3 31 31 H 1.09000 * 109.46881 * 183.95323 * 3 2 1 32 32 H 1.09001 * 109.47077 * 303.95420 * 3 2 1 33 33 H 1.09000 * 109.47028 * 63.95517 * 3 2 1 34 34 H 1.08994 * 109.47086 * 49.99884 * 4 2 1 35 35 H 1.09001 * 109.46701 * 290.00091 * 4 2 1 36 36 H 1.09000 * 109.47318 * 60.00177 * 5 4 2 37 37 H 1.08993 * 109.47225 * 299.99615 * 5 4 2 38 38 H 1.09000 * 109.46757 * 60.00107 * 6 5 4 39 39 H 1.09001 * 109.46821 * 299.99970 * 6 5 4 40 40 H 1.08995 * 109.47364 * 30.00213 * 8 7 6 41 41 H 1.09002 * 109.47090 * 149.99764 * 8 7 6 42 42 H 0.96997 * 120.00127 * 179.97438 * 12 11 9 43 43 H 1.09009 * 109.47352 * 300.27556 * 19 17 7 44 44 H 1.08998 * 109.47585 * 60.27844 * 19 17 7 45 45 H 1.08997 * 109.47162 * 300.00266 * 21 20 19 46 46 H 1.09009 * 109.46711 * 60.00044 * 21 20 19 47 47 H 1.08998 * 110.48690 * 339.59376 * 24 22 21 48 48 H 1.08997 * 110.49442 * 102.11510 * 24 22 21 49 49 H 1.09004 * 109.87719 * 117.39206 * 25 24 22 50 50 H 1.08994 * 109.87742 * 238.54334 * 25 24 22 51 51 H 1.08996 * 110.61599 * 201.43959 * 27 26 25 52 52 H 1.09001 * 110.61752 * 78.44147 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9552 0.9703 6 6 4.0529 -1.7525 2.1556 7 7 5.4977 -1.9343 1.9951 8 6 6.0139 -3.1059 1.2832 9 6 6.2358 -4.2306 2.2614 10 1 6.0139 -4.0871 3.3086 11 6 6.7210 -5.4431 1.8193 12 7 6.9141 -6.4248 2.6729 13 14 7.1040 -5.6915 0.0080 14 1 8.5151 -5.3119 -0.2561 15 1 6.8998 -7.1182 -0.3500 16 1 6.2015 -4.8418 -0.8099 17 6 6.3518 -1.0235 2.5025 18 8 5.9244 -0.0537 3.0923 19 6 7.8382 -1.2136 2.3429 20 8 8.5270 -0.1277 2.9661 21 6 9.9504 -0.2117 2.8722 22 6 10.5797 0.9957 3.5700 23 1 10.1382 1.9249 3.2094 24 6 12.1162 1.0043 3.3807 25 6 12.6638 1.4308 4.7566 26 8 11.5328 1.6838 5.6069 27 6 10.4428 0.8783 5.1094 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.5089 -1.7406 1.1757 35 1 1.7974 -0.2247 2.0628 36 1 3.9909 0.0195 0.9323 37 1 3.7024 -1.4964 0.0452 38 1 3.5665 -2.7272 2.1940 39 1 3.8549 -1.2108 3.0805 40 1 5.2935 -3.4184 0.5274 41 1 6.9582 -2.8515 0.8018 42 1 7.2551 -7.2779 2.3619 43 1 8.1372 -2.1508 2.8126 44 1 8.0891 -1.2423 1.2826 45 1 10.2928 -1.1280 3.3530 46 1 10.2454 -0.2198 1.8228 47 1 12.4740 0.0083 3.1198 48 1 12.4023 1.7244 2.6142 49 1 13.2723 0.6304 5.1777 50 1 13.2601 2.3373 4.6534 51 1 9.4857 1.2805 5.4414 52 1 10.5555 -0.1584 5.4268 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344372537.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:05 Heat of formation + Delta-G solvation = -124.859531 kcal Electronic energy + Delta-G solvation = -28794.171908 eV Core-core repulsion = 24794.021475 eV Total energy + Delta-G solvation = -4000.150434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.66816 -39.28151 -37.72349 -37.10702 -35.25554 -33.05787 -32.82424 -31.75962 -29.72521 -28.13564 -27.91540 -27.62668 -25.75430 -24.91537 -22.70421 -22.61520 -22.32557 -20.74654 -20.65568 -18.50992 -17.20366 -17.11591 -16.56490 -16.18394 -15.89463 -15.81022 -15.49992 -15.40509 -15.11535 -14.89096 -14.62542 -14.34956 -14.12534 -13.79918 -13.49479 -13.34255 -12.90680 -12.62628 -12.44503 -12.32254 -12.14538 -11.93213 -11.86390 -11.83403 -11.67452 -11.57076 -11.48319 -11.35563 -11.32057 -10.87773 -10.80851 -10.78603 -10.70437 -10.35849 -10.23514 -9.77471 -9.69635 -9.44914 -9.09076 -8.79162 -8.39875 -7.83542 -6.28629 -4.31428 3.10901 3.18319 3.21153 3.22842 3.28937 3.81816 3.95529 4.19651 4.22716 4.44705 4.65386 4.81936 4.97607 5.02332 5.05965 5.10230 5.14011 5.21011 5.24383 5.33502 5.34166 5.46397 5.48290 5.52142 5.54589 5.58229 5.59963 5.62513 5.67258 5.73347 5.75279 5.76625 5.85209 5.89225 5.91495 5.94839 6.07334 6.10806 6.34078 6.39636 6.52413 6.60976 6.76225 6.98579 7.00975 7.16386 7.34857 7.38339 8.03353 8.33017 8.75785 8.86926 9.30137 10.83759 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.007571 B = 0.003432 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3697.426299 B = 8157.443198 C =11101.751609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.549 5.549 3 C 0.022 3.978 4 C 0.058 3.942 5 C -0.130 4.130 6 C 0.124 3.876 7 N -0.588 5.588 8 C 0.207 3.793 9 C -0.545 4.545 10 H 0.079 0.921 11 C 0.078 3.922 12 N -0.889 5.889 13 Si 0.870 3.130 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.262 1.262 17 C 0.522 3.478 18 O -0.550 6.550 19 C 0.047 3.953 20 O -0.367 6.367 21 C 0.070 3.930 22 C -0.118 4.118 23 H 0.095 0.905 24 C -0.150 4.150 25 C 0.048 3.952 26 O -0.382 6.382 27 C 0.054 3.946 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.025 0.975 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.027 0.973 42 H 0.267 0.733 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.082 0.918 51 H 0.100 0.900 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 12.464 -4.183 13.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.070 4.070 5 C -0.169 4.169 6 C 0.000 4.000 7 N -0.320 5.320 8 C 0.085 3.915 9 C -0.584 4.584 10 H 0.097 0.903 11 C -0.126 4.126 12 N -0.526 5.526 13 Si 0.696 3.304 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.187 1.187 17 C 0.309 3.691 18 O -0.429 6.429 19 C -0.033 4.033 20 O -0.285 6.285 21 C -0.007 4.007 22 C -0.137 4.137 23 H 0.113 0.887 24 C -0.188 4.188 25 C -0.029 4.029 26 O -0.301 6.301 27 C -0.022 4.022 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.076 0.924 50 H 0.100 0.900 51 H 0.119 0.881 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.495 12.818 -4.015 13.515 hybrid contribution 0.172 -0.550 -0.651 0.869 sum 1.668 12.269 -4.665 13.231 Atomic orbital electron populations 1.22369 0.87598 1.02191 1.00193 1.61982 1.07559 1.13991 1.43700 1.22429 1.01434 0.88697 1.00081 1.22078 0.95849 0.98126 0.90961 1.21963 0.93945 1.01189 0.99806 1.21232 0.80501 1.00461 0.97762 1.47786 1.05412 1.23413 1.55393 1.19849 0.94722 0.83749 0.93131 1.21394 1.45208 0.95511 0.96259 0.90253 1.24881 0.94645 0.95635 0.97475 1.69890 1.44424 1.03740 1.34512 0.86950 0.79427 0.78282 0.85759 1.19896 1.20770 1.18689 1.19988 0.87884 0.82445 0.78738 1.90626 1.79127 1.30533 1.42619 1.22303 0.91184 0.91430 0.98337 1.87924 1.16915 1.45498 1.78197 1.22447 0.81644 0.97208 0.99403 1.22674 0.94617 0.99731 0.96656 0.88697 1.22936 0.94563 1.02938 0.98371 1.23122 0.89708 1.00858 0.89259 1.88869 1.21354 1.66424 1.53428 1.23646 0.91036 0.95760 0.91742 0.95823 0.91624 0.91335 0.90898 0.91767 0.95686 0.90516 0.94653 0.91765 0.91022 0.90002 0.90789 0.94413 0.95518 0.92274 0.88613 0.90937 0.92661 0.92933 0.90277 0.90162 0.92382 0.90001 0.88136 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 60.07 0.57 0.83 16 2 N -0.55 -6.86 5.02 -251.26 -1.26 -8.12 16 3 C 0.02 0.25 9.32 60.07 0.56 0.81 16 4 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 5 C -0.13 -1.98 5.46 -26.73 -0.15 -2.13 16 6 C 0.12 2.18 5.41 -4.04 -0.02 2.16 16 7 N -0.59 -11.75 2.46 -175.06 -0.43 -12.18 16 8 C 0.21 4.38 4.03 -5.20 -0.02 4.35 16 9 C -0.55 -13.84 9.81 -34.44 -0.34 -14.18 16 10 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 11 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 12 N -0.89 -25.10 13.96 55.43 0.77 -24.32 16 13 Si 0.87 19.07 27.47 -169.99 -4.67 14.40 16 14 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 17 C 0.52 10.76 7.75 -10.98 -0.09 10.67 16 18 O -0.55 -12.61 16.08 -14.36 -0.23 -12.84 16 19 C 0.05 0.84 4.97 36.01 0.18 1.02 16 20 O -0.37 -6.37 9.83 -55.14 -0.54 -6.91 16 21 C 0.07 0.92 5.27 37.16 0.20 1.12 16 22 C -0.12 -1.39 3.38 -88.62 -0.30 -1.69 16 23 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 24 C -0.15 -1.37 6.60 -25.20 -0.17 -1.54 16 25 C 0.05 0.46 7.70 37.74 0.29 0.76 16 26 O -0.38 -5.05 11.52 -35.23 -0.41 -5.46 16 27 C 0.05 0.70 7.13 38.21 0.27 0.97 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 31 H 0.07 0.90 6.47 -51.93 -0.34 0.56 16 32 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 35 H 0.04 0.47 8.12 -51.93 -0.42 0.04 16 36 H 0.06 1.05 6.55 -51.93 -0.34 0.70 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 39 H 0.07 1.34 7.42 -51.93 -0.39 0.96 16 40 H 0.04 0.79 7.13 -51.93 -0.37 0.42 16 41 H 0.03 0.54 5.88 -51.93 -0.31 0.23 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 43 H 0.10 1.80 7.98 -51.92 -0.41 1.39 16 44 H 0.07 1.16 7.41 -51.93 -0.38 0.77 16 45 H 0.06 0.70 7.98 -51.93 -0.41 0.28 16 46 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 47 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 48 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 52 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 LS Contribution 414.79 15.07 6.25 6.25 Total: -1.00 -30.93 414.79 -9.33 -40.25 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -9.69 Total: 3.10 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 0.88 Total: 5.83 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.92 Total: -44.62 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -1.18 Total: -25.21 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.67 Total: 14.40 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -30.93 -9.33 -40.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344372537.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.607 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds