Wall clock time and date at job start Tue Mar 31 2020 05:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86799 * 119.99877 * 2 1 4 4 H 1.48496 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47080 * 299.99899 * 3 2 1 6 6 H 1.48502 * 109.47342 * 59.99982 * 3 2 1 7 7 C 1.38942 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00087 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00302 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00072 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 10 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 C 1.50700 * 109.46769 * 179.72341 * 17 16 14 19 19 C 1.38459 * 120.01665 * 269.72185 * 18 17 16 20 20 F 1.35106 * 120.01961 * 0.02562 * 19 18 17 21 21 C 1.38449 * 119.95974 * 179.72847 * 19 18 17 22 22 C 1.38227 * 120.00076 * 0.52590 * 21 19 18 23 23 C 1.38197 * 120.03851 * 359.77033 * 22 21 19 24 24 C 1.38289 * 120.02367 * 90.00055 * 18 17 16 25 25 Cl 1.73604 * 119.99490 * 0.02562 * 24 18 17 26 26 H 0.96997 * 119.99818 * 0.02562 * 1 2 3 27 27 H 0.97002 * 119.99872 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47088 * 59.99268 * 12 10 9 29 29 H 1.09006 * 109.46998 * 299.99468 * 12 10 9 30 30 H 0.97000 * 120.00386 * 0.02562 * 13 12 10 31 31 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 32 32 H 1.09004 * 109.46963 * 299.72135 * 17 16 14 33 33 H 1.08994 * 109.47567 * 59.72287 * 17 16 14 34 34 H 1.08001 * 119.99674 * 180.27767 * 21 19 18 35 35 H 1.07999 * 119.97743 * 179.75053 * 22 21 19 36 36 H 1.08001 * 119.98447 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0004 14 6 1.7466 -7.2471 0.0013 15 8 0.5512 -7.4693 0.0022 16 7 2.6225 -8.2715 0.0011 17 6 2.1341 -9.6527 -0.0041 18 6 3.3063 -10.5998 -0.0101 19 6 3.8395 -11.0345 -1.2116 20 9 3.3096 -10.6093 -2.3795 21 6 4.9200 -11.9002 -1.2157 22 6 5.4588 -12.3386 -0.0207 23 6 4.9227 -11.9096 1.1786 24 6 3.8463 -11.0399 1.1845 25 17 3.1734 -10.5017 2.6917 26 1 -0.4850 0.8400 -0.0004 27 1 0.3534 -2.3906 0.0005 28 1 0.6167 -4.9208 -0.8885 29 1 0.6176 -4.9205 0.8915 30 1 3.1495 -5.7992 0.0000 31 1 3.5761 -8.0942 0.0000 32 1 1.5299 -9.8278 0.8861 33 1 1.5272 -9.8202 -0.8939 34 1 5.3392 -12.2361 -2.1527 35 1 6.2990 -13.0171 -0.0243 36 1 5.3441 -12.2531 2.1118 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344529056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:47 Heat of formation + Delta-G solvation = -92.814976 kcal Electronic energy + Delta-G solvation = -24252.654151 eV Core-core repulsion = 20098.216939 eV Total energy + Delta-G solvation = -4154.437212 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.37445 -40.13229 -39.46287 -38.16512 -36.89883 -35.20493 -34.35737 -33.61804 -31.77060 -31.32410 -30.95365 -27.90925 -26.08404 -24.32066 -23.37649 -22.18513 -20.74254 -19.56451 -18.59974 -18.20615 -17.92302 -17.30962 -16.63640 -16.17918 -15.78494 -15.52848 -15.47304 -15.21125 -14.66124 -14.39945 -14.28049 -14.07082 -13.92995 -13.74769 -13.40628 -13.34762 -13.06593 -12.32561 -12.15562 -11.86588 -11.85082 -11.81783 -11.61624 -11.25358 -11.12740 -10.39594 -10.31301 -10.12929 -9.62777 -9.44661 -9.23389 -9.17591 -8.60129 -8.58811 -8.07828 -6.49507 -3.91421 0.37382 0.47069 1.57880 2.67015 3.06870 3.11612 3.23734 3.30649 3.41883 3.69229 3.77578 3.99903 4.11063 4.23422 4.29434 4.49956 4.62257 4.85243 4.92865 5.13722 5.19356 5.27566 5.45951 5.51818 5.62496 5.65690 5.94390 6.03824 6.10759 6.14013 6.41145 6.77782 7.07723 7.48126 7.94790 8.23935 8.47473 8.80376 9.06838 9.41903 9.89805 10.67536 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.002180 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.112467 B =12843.308493 C =13036.465957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.723 5.723 14 C 0.708 3.292 15 O -0.596 6.596 16 N -0.743 5.743 17 C 0.180 3.820 18 C -0.137 4.137 19 C 0.133 3.867 20 F -0.124 7.124 21 C -0.153 4.153 22 C -0.071 4.071 23 C -0.124 4.124 24 C 0.007 3.993 25 Cl -0.042 7.042 26 H 0.273 0.727 27 H 0.396 0.604 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.407 0.593 31 H 0.397 0.603 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.867 -26.347 0.988 27.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.185 5.185 10 C 0.215 3.785 11 O -0.484 6.484 12 C 0.000 4.000 13 N -0.380 5.380 14 C 0.408 3.592 15 O -0.474 6.474 16 N -0.399 5.399 17 C 0.056 3.944 18 C -0.140 4.140 19 C 0.113 3.887 20 F -0.102 7.102 21 C -0.172 4.172 22 C -0.089 4.089 23 C -0.143 4.143 24 C -0.021 4.021 25 Cl -0.012 7.012 26 H 0.083 0.917 27 H 0.230 0.770 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.244 0.756 31 H 0.231 0.769 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.307 -26.261 1.082 27.565 hybrid contribution 0.523 1.111 -0.108 1.233 sum 8.830 -25.150 0.974 26.673 Atomic orbital electron populations 1.69628 1.05996 1.28383 1.49500 1.25327 0.95672 0.99923 0.96880 0.85759 0.79664 0.80857 0.77808 1.19158 1.20631 1.20626 1.19770 0.93465 0.81995 1.48066 0.87658 1.41795 1.09504 1.04453 1.62742 1.19771 0.88292 0.85020 0.85406 1.90491 1.13762 1.86876 1.57299 1.20791 0.91200 0.84793 1.03181 1.44744 1.11257 1.03229 1.78804 1.15767 0.85064 0.80465 0.77940 1.90912 1.13936 1.84210 1.58383 1.44927 1.09155 1.04256 1.81589 1.19882 0.91982 0.78251 1.04295 1.19799 1.00690 1.02444 0.91019 1.17387 0.94051 0.96416 0.80822 1.91577 1.85184 1.88219 1.45221 1.21308 0.96407 0.98964 1.00521 1.21038 0.99028 0.98168 0.90685 1.21170 0.95574 0.97727 0.99816 1.20688 0.96134 0.98025 0.87247 1.98429 1.84317 1.88865 1.29630 0.91662 0.77006 0.89975 0.89973 0.75594 0.76941 0.89548 0.90056 0.83778 0.83775 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.10 13.05 55.50 0.72 -23.38 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 8 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -13.80 5.29 -10.96 -0.06 -13.86 16 10 C 0.43 9.99 7.85 -10.98 -0.09 9.90 16 11 O -0.60 -15.44 15.24 5.55 0.08 -15.35 16 12 C 0.13 2.45 6.15 -5.19 -0.03 2.42 16 13 N -0.72 -12.53 5.53 -66.41 -0.37 -12.89 16 14 C 0.71 11.89 8.57 -86.92 -0.74 11.15 16 15 O -0.60 -11.92 16.34 5.28 0.09 -11.83 16 16 N -0.74 -9.56 5.55 -66.41 -0.37 -9.93 16 17 C 0.18 2.08 5.23 -5.19 -0.03 2.05 16 18 C -0.14 -1.27 5.26 -104.52 -0.55 -1.82 16 19 C 0.13 1.16 7.24 -39.42 -0.29 0.87 16 20 F -0.12 -1.29 16.47 2.25 0.04 -1.25 16 21 C -0.15 -0.93 10.03 -39.51 -0.40 -1.33 16 22 C -0.07 -0.34 10.04 -39.60 -0.40 -0.73 16 23 C -0.12 -0.73 9.83 -39.54 -0.39 -1.12 16 24 C 0.01 0.05 6.31 -39.51 -0.25 -0.20 16 25 Cl -0.04 -0.38 27.30 -51.86 -1.42 -1.80 16 26 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 27 H 0.40 9.57 7.90 -40.82 -0.32 9.25 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.41 6.85 7.45 -40.82 -0.30 6.55 16 31 H 0.40 4.37 8.48 -40.82 -0.35 4.02 16 32 H 0.09 1.04 6.90 -51.93 -0.36 0.69 16 33 H 0.08 1.00 7.63 -51.93 -0.40 0.61 16 34 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.14 0.27 8.06 -52.49 -0.42 -0.15 16 36 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 341.63 15.07 5.15 5.15 Total: -1.00 -32.56 341.63 -7.90 -40.47 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -3.35 Total: 15.72 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: -3.40 Total: 13.30 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.07 Total: -60.06 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: 0.17 Total: -27.18 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.42 Total: -1.80 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.56 -7.90 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344529056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.349 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds