Wall clock time and date at job start Tue Mar 31 2020 05:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00270 * 2 1 4 4 H 1.48503 * 109.46583 * 269.99712 * 3 2 1 5 5 H 1.48496 * 109.47105 * 29.99870 * 3 2 1 6 6 H 1.48496 * 109.47061 * 150.00299 * 3 2 1 7 7 C 1.38956 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99682 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99811 * 179.97438 * 7 2 1 10 10 C 1.34778 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99688 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00015 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46708 * 180.02562 * 12 10 9 14 14 C 1.34781 * 119.99511 * 180.02562 * 13 12 10 15 15 O 1.21584 * 119.99970 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99489 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 16 14 19 19 C 1.38224 * 119.99793 * 259.72433 * 18 17 16 20 20 C 1.38211 * 120.03867 * 179.72531 * 19 18 17 21 21 C 1.38383 * 120.03171 * 0.55026 * 20 19 18 22 22 Cl 1.73605 * 119.99855 * 179.74905 * 21 20 19 23 23 C 1.38289 * 120.00574 * 359.72171 * 21 20 19 24 24 C 1.38442 * 120.00007 * 79.99696 * 18 17 16 25 25 F 1.35099 * 120.02070 * 0.02800 * 24 18 17 26 26 H 0.97003 * 119.99526 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99939 * 0.02562 * 9 7 2 28 28 H 1.08994 * 109.46995 * 60.00543 * 12 10 9 29 29 H 1.08994 * 109.46942 * 300.00312 * 12 10 9 30 30 H 0.97003 * 120.00113 * 0.02562 * 13 12 10 31 31 H 0.96996 * 120.00772 * 359.97438 * 16 14 13 32 32 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 33 33 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 34 34 H 1.08001 * 119.98156 * 359.97438 * 19 18 17 35 35 H 1.07991 * 119.98012 * 180.25184 * 20 19 18 36 36 H 1.07997 * 120.02212 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0000 10 6 4.0537 -2.3707 0.0011 11 8 3.4471 -3.4211 0.0020 12 6 5.5607 -2.3708 0.0011 13 7 6.0489 -3.7521 0.0017 14 6 7.3740 -3.9984 0.0023 15 8 8.1641 -3.0743 0.0019 16 7 7.8231 -5.2691 0.0023 17 6 9.2634 -5.5369 0.0036 18 6 9.4976 -7.0256 0.0040 19 6 9.8149 -7.6749 1.1823 20 6 10.0243 -9.0411 1.1846 21 6 9.9276 -9.7586 0.0053 22 17 10.1972 -11.4736 0.0082 23 6 9.6157 -9.1097 -1.1754 24 6 9.4004 -7.7419 -1.1767 25 9 9.0963 -7.1067 -2.3296 26 1 -0.4849 0.8401 0.0004 27 1 3.8648 -0.3634 -0.0004 28 1 5.9240 -1.8563 0.8906 29 1 5.9240 -1.8577 -0.8893 30 1 5.4184 -4.4893 0.0016 31 1 7.1928 -6.0063 0.0023 32 1 9.7154 -5.0979 -0.8859 33 1 9.7138 -5.0983 0.8941 34 1 9.8954 -7.1150 2.1023 35 1 10.2682 -9.5480 2.1065 36 1 9.5398 -9.6695 -2.0958 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345818525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:48 Heat of formation + Delta-G solvation = -88.029747 kcal Electronic energy + Delta-G solvation = -23970.451499 eV Core-core repulsion = 19816.221789 eV Total energy + Delta-G solvation = -4154.229709 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.40134 -40.20514 -39.56807 -38.38913 -37.13558 -35.16305 -34.46529 -33.73964 -31.86944 -31.71730 -31.15852 -28.07226 -26.10789 -24.17723 -23.59254 -22.15606 -20.83844 -19.65764 -18.90587 -18.45021 -18.07650 -17.27736 -16.69520 -16.24166 -15.93323 -15.63880 -15.60839 -15.02945 -14.93802 -14.45120 -14.36593 -14.21698 -14.00634 -13.77167 -13.65841 -13.19062 -13.12961 -12.50000 -12.37277 -12.16694 -12.03221 -11.88559 -11.77500 -11.57299 -11.23506 -10.64225 -10.24135 -10.06248 -9.69905 -9.58893 -9.33136 -9.21730 -8.77150 -8.73137 -8.30551 -6.40900 -3.93469 0.27475 0.49965 1.44324 2.56385 2.99519 3.00332 3.04684 3.12832 3.28092 3.57325 3.66226 4.02347 4.03546 4.05912 4.30073 4.34250 4.55664 4.61568 4.87950 5.06850 5.14164 5.27508 5.35355 5.39753 5.51334 5.66721 5.70874 5.79238 5.85004 6.09538 6.30587 6.61002 6.95215 7.44817 7.99940 8.11350 8.44119 8.67316 8.81601 9.29734 9.63402 10.71230 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.028058 B = 0.001921 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.688826 B =14576.031678 C =14969.461776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.576 5.576 10 C 0.438 3.562 11 O -0.579 6.579 12 C 0.126 3.874 13 N -0.724 5.724 14 C 0.708 3.292 15 O -0.597 6.597 16 N -0.745 5.745 17 C 0.183 3.817 18 C -0.137 4.137 19 C -0.056 4.056 20 C -0.123 4.123 21 C -0.002 4.002 22 Cl -0.055 7.055 23 C -0.151 4.151 24 C 0.134 3.866 25 F -0.123 7.123 26 H 0.275 0.725 27 H 0.375 0.625 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.408 0.592 31 H 0.398 0.602 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.370 -17.818 1.290 29.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.214 5.214 10 C 0.224 3.776 11 O -0.464 6.464 12 C -0.002 4.002 13 N -0.381 5.381 14 C 0.408 3.592 15 O -0.476 6.476 16 N -0.402 5.402 17 C 0.059 3.941 18 C -0.139 4.139 19 C -0.075 4.075 20 C -0.141 4.141 21 C -0.029 4.029 22 Cl -0.026 7.026 23 C -0.170 4.170 24 C 0.113 3.887 25 F -0.101 7.101 26 H 0.086 0.914 27 H 0.208 0.792 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.246 0.754 31 H 0.232 0.768 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 23.457 -17.626 1.237 29.367 hybrid contribution -0.103 0.575 -0.270 0.644 sum 23.353 -17.051 0.967 28.932 Atomic orbital electron populations 1.69622 1.05713 1.27806 1.48190 1.25075 0.95546 0.98194 0.97147 0.86663 0.79912 0.83728 0.79151 1.19385 1.19998 1.19194 1.19438 0.78960 0.96785 1.48655 0.86097 1.42114 1.07687 1.06135 1.65452 1.19660 0.88098 0.84870 0.84959 1.90537 1.69252 1.30931 1.55659 1.20812 0.93345 0.82791 1.03286 1.44742 1.05137 1.09390 1.78834 1.15771 0.82632 0.82924 0.77912 1.90911 1.55155 1.43045 1.58456 1.45008 1.07133 1.06577 1.81493 1.19881 0.81443 0.88766 1.03970 1.20130 1.04418 0.96754 0.92590 1.21021 0.95511 0.93473 0.97501 1.21162 1.01518 0.94028 0.97442 1.20693 1.01800 0.85861 0.94547 1.98407 1.94559 1.10792 1.98841 1.21012 1.03852 0.92991 0.99158 1.17356 0.99432 0.89866 0.82010 1.91585 1.90034 1.81764 1.46707 0.91392 0.79220 0.89822 0.89828 0.75413 0.76790 0.90161 0.89859 0.83446 0.83862 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.93 13.96 55.50 0.77 -24.15 16 2 C 0.04 1.19 5.50 -17.46 -0.10 1.10 16 3 Si 0.88 18.96 27.74 -169.99 -4.71 14.25 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 7 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.78 7.39 -52.48 -0.39 3.40 16 9 N -0.58 -13.35 5.09 -10.96 -0.06 -13.40 16 10 C 0.44 9.59 7.85 -10.98 -0.09 9.50 16 11 O -0.58 -14.56 15.24 5.54 0.08 -14.47 16 12 C 0.13 2.18 6.15 -5.19 -0.03 2.15 16 13 N -0.72 -11.49 5.53 -66.42 -0.37 -11.86 16 14 C 0.71 10.78 8.57 -86.92 -0.74 10.03 16 15 O -0.60 -10.93 16.34 5.29 0.09 -10.84 16 16 N -0.75 -8.36 5.55 -66.41 -0.37 -8.73 16 17 C 0.18 1.72 5.52 -5.19 -0.03 1.70 16 18 C -0.14 -1.03 5.25 -104.55 -0.55 -1.58 16 19 C -0.06 -0.32 9.67 -39.60 -0.38 -0.70 16 20 C -0.12 -0.68 9.83 -39.54 -0.39 -1.07 16 21 C 0.00 -0.01 6.32 -39.51 -0.25 -0.26 16 22 Cl -0.06 -0.35 28.96 -51.86 -1.50 -1.85 16 23 C -0.15 -1.07 9.81 -39.48 -0.39 -1.46 16 24 C 0.13 1.10 7.25 -39.42 -0.29 0.82 16 25 F -0.12 -1.24 16.66 2.25 0.04 -1.20 16 26 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.41 6.36 7.45 -40.82 -0.30 6.06 16 31 H 0.40 3.79 8.48 -40.82 -0.35 3.45 16 32 H 0.08 0.85 7.95 -51.93 -0.41 0.43 16 33 H 0.08 0.74 8.00 -51.93 -0.42 0.32 16 34 H 0.15 0.57 8.03 -52.49 -0.42 0.15 16 35 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 36 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -33.08 341.45 -7.64 -40.72 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -3.38 Total: 14.85 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -3.38 Total: 11.55 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.02 Total: -58.14 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: 0.17 Total: -25.31 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.25 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.50 Total: -1.85 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.08 -7.64 -40.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345818525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.309 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds