Wall clock time and date at job start Tue Mar 31 2020 05:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00270 * 2 1 4 4 H 1.48503 * 109.46583 * 269.99712 * 3 2 1 5 5 H 1.48496 * 109.47105 * 29.99870 * 3 2 1 6 6 H 1.48496 * 109.47061 * 150.00299 * 3 2 1 7 7 C 1.38956 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99682 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99811 * 179.97438 * 7 2 1 10 10 C 1.34778 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99688 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00015 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46708 * 180.02562 * 12 10 9 14 14 C 1.34781 * 119.99511 * 180.02562 * 13 12 10 15 15 O 1.21584 * 119.99970 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99489 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 16 14 19 19 C 1.38224 * 119.99793 * 259.72433 * 18 17 16 20 20 C 1.38211 * 120.03867 * 179.72531 * 19 18 17 21 21 C 1.38383 * 120.03171 * 0.55026 * 20 19 18 22 22 Cl 1.73605 * 119.99855 * 179.74905 * 21 20 19 23 23 C 1.38289 * 120.00574 * 359.72171 * 21 20 19 24 24 C 1.38442 * 120.00007 * 79.99696 * 18 17 16 25 25 F 1.35099 * 120.02070 * 0.02800 * 24 18 17 26 26 H 0.97003 * 119.99526 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99939 * 0.02562 * 9 7 2 28 28 H 1.08994 * 109.46995 * 60.00543 * 12 10 9 29 29 H 1.08994 * 109.46942 * 300.00312 * 12 10 9 30 30 H 0.97003 * 120.00113 * 0.02562 * 13 12 10 31 31 H 0.96996 * 120.00772 * 359.97438 * 16 14 13 32 32 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 33 33 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 34 34 H 1.08001 * 119.98156 * 359.97438 * 19 18 17 35 35 H 1.07991 * 119.98012 * 180.25184 * 20 19 18 36 36 H 1.07997 * 120.02212 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0000 10 6 4.0537 -2.3707 0.0011 11 8 3.4471 -3.4211 0.0020 12 6 5.5607 -2.3708 0.0011 13 7 6.0489 -3.7521 0.0017 14 6 7.3740 -3.9984 0.0023 15 8 8.1641 -3.0743 0.0019 16 7 7.8231 -5.2691 0.0023 17 6 9.2634 -5.5369 0.0036 18 6 9.4976 -7.0256 0.0040 19 6 9.8149 -7.6749 1.1823 20 6 10.0243 -9.0411 1.1846 21 6 9.9276 -9.7586 0.0053 22 17 10.1972 -11.4736 0.0082 23 6 9.6157 -9.1097 -1.1754 24 6 9.4004 -7.7419 -1.1767 25 9 9.0963 -7.1067 -2.3296 26 1 -0.4849 0.8401 0.0004 27 1 3.8648 -0.3634 -0.0004 28 1 5.9240 -1.8563 0.8906 29 1 5.9240 -1.8577 -0.8893 30 1 5.4184 -4.4893 0.0016 31 1 7.1928 -6.0063 0.0023 32 1 9.7154 -5.0979 -0.8859 33 1 9.7138 -5.0983 0.8941 34 1 9.8954 -7.1150 2.1023 35 1 10.2682 -9.5480 2.1065 36 1 9.5398 -9.6695 -2.0958 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345818525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:48 Heat of formation + Delta-G solvation = -112.718457 kcal Electronic energy + Delta-G solvation = -23971.522081 eV Core-core repulsion = 19816.221789 eV Total energy + Delta-G solvation = -4155.300292 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.08284 -41.30032 -40.41884 -39.98519 -37.67313 -36.34153 -35.96938 -35.28644 -33.82644 -32.48062 -31.71844 -29.46192 -27.16545 -25.85771 -24.11201 -22.79160 -21.99908 -21.45911 -20.58875 -19.67800 -18.87699 -17.88963 -17.70181 -17.45896 -16.89674 -16.87513 -16.70375 -16.60740 -15.84882 -15.71680 -15.70416 -15.17141 -14.90977 -14.73984 -14.43582 -14.28918 -14.24948 -14.17156 -13.97889 -13.50299 -12.96213 -12.85976 -12.46443 -12.43683 -12.34059 -12.06351 -11.99236 -11.57163 -11.49701 -10.64579 -10.46316 -10.31415 -10.10653 -9.88106 -9.77654 -8.44783 -6.06726 -0.27700 -0.00538 0.94070 1.32173 1.35263 1.44830 1.58956 1.79977 2.10196 2.21469 2.33195 2.82275 3.10165 3.11578 3.33174 3.38786 3.56063 3.87975 4.00645 4.03144 4.37902 4.41295 4.44478 4.47282 4.63039 4.77116 4.89806 5.03311 5.15992 5.28431 5.35939 5.49680 5.58346 5.88371 5.89781 6.49710 6.79039 6.96884 7.29297 7.49129 7.79326 8.71593 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.028058 B = 0.001921 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.688826 B =14576.031678 C =14969.461776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.231 1.231 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.578 5.578 10 C 0.445 3.555 11 O -0.615 6.615 12 C 0.138 3.862 13 N -0.727 5.727 14 C 0.709 3.291 15 O -0.626 6.626 16 N -0.731 5.731 17 C 0.184 3.816 18 C -0.139 4.139 19 C -0.048 4.048 20 C -0.116 4.116 21 C -0.007 4.007 22 Cl -0.054 7.054 23 C -0.154 4.154 24 C 0.116 3.884 25 F -0.139 7.139 26 H 0.281 0.719 27 H 0.392 0.608 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.409 0.591 31 H 0.407 0.593 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.172 0.828 35 H 0.166 0.834 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.076 -17.274 2.261 31.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.155 1.155 7 C -0.460 4.460 8 H 0.081 0.919 9 N -0.218 5.218 10 C 0.233 3.767 11 O -0.501 6.501 12 C 0.010 3.990 13 N -0.385 5.385 14 C 0.409 3.591 15 O -0.508 6.508 16 N -0.387 5.387 17 C 0.060 3.940 18 C -0.141 4.141 19 C -0.067 4.067 20 C -0.134 4.134 21 C -0.034 4.034 22 Cl -0.025 7.025 23 C -0.174 4.174 24 C 0.096 3.904 25 F -0.118 7.118 26 H 0.091 0.909 27 H 0.228 0.772 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.247 0.753 31 H 0.243 0.757 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.189 0.811 35 H 0.184 0.816 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 26.195 -17.136 2.209 31.380 hybrid contribution -0.941 0.189 -0.563 1.113 sum 25.255 -16.946 1.646 30.458 Atomic orbital electron populations 1.69786 1.08038 1.29436 1.49327 1.26086 0.96454 1.02646 0.95747 0.85435 0.79615 0.76969 0.80048 1.18163 1.19862 1.15453 1.19025 0.80983 0.95239 1.50726 0.91880 1.41915 1.06106 1.07443 1.66310 1.20531 0.90099 0.83842 0.82233 1.90526 1.70825 1.32350 1.56399 1.20703 0.89115 0.84103 1.05073 1.44718 1.05595 1.08853 1.79287 1.15825 0.81908 0.83722 0.77667 1.90890 1.55648 1.44273 1.59945 1.44970 1.08283 1.05503 1.79981 1.19947 0.80030 0.90142 1.03831 1.20008 1.05368 0.95617 0.93096 1.21269 0.94185 0.93640 0.97564 1.21450 1.00156 0.93941 0.97876 1.20828 1.01750 0.86014 0.94793 1.98411 1.94528 1.10713 1.98840 1.21089 1.03806 0.92648 0.99842 1.17550 1.00701 0.90402 0.81794 1.91541 1.90422 1.82121 1.47682 0.90946 0.77188 0.87794 0.88042 0.75317 0.75719 0.91506 0.88799 0.81099 0.81602 0.82834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.35 13.96 21.67 0.30 -54.05 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 0.96 37.96 27.74 68.60 1.90 39.86 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 7 C -0.33 -18.72 10.16 84.04 0.85 -17.86 16 8 H 0.06 4.22 7.39 -2.91 -0.02 4.20 16 9 N -0.58 -26.39 5.09 -306.97 -1.56 -27.96 16 10 C 0.45 19.26 7.85 87.66 0.69 19.95 16 11 O -0.62 -31.49 15.24 -3.08 -0.05 -31.54 16 12 C 0.14 4.50 6.15 85.63 0.53 5.02 16 13 N -0.73 -22.02 5.53 -482.30 -2.67 -24.69 16 14 C 0.71 20.42 8.57 179.05 1.53 21.95 16 15 O -0.63 -21.78 16.34 -3.98 -0.07 -21.84 16 16 N -0.73 -15.33 5.55 -482.29 -2.68 -18.01 16 17 C 0.18 3.19 5.52 85.63 0.47 3.66 16 18 C -0.14 -1.87 5.25 -19.82 -0.10 -1.98 16 19 C -0.05 -0.42 9.67 22.26 0.22 -0.20 16 20 C -0.12 -0.96 9.83 22.30 0.22 -0.74 16 21 C -0.01 -0.08 6.32 22.32 0.14 0.06 16 22 Cl -0.05 -0.61 28.96 -2.72 -0.08 -0.69 16 23 C -0.15 -2.05 9.81 22.34 0.22 -1.83 16 24 C 0.12 1.82 7.25 22.37 0.16 1.99 16 25 F -0.14 -2.82 16.66 44.97 0.75 -2.07 16 26 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 27 H 0.39 15.00 5.76 -92.71 -0.53 14.47 16 28 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.41 12.42 7.45 -92.71 -0.69 11.73 16 31 H 0.41 7.19 8.48 -92.71 -0.79 6.40 16 32 H 0.07 1.37 7.95 -2.39 -0.02 1.35 16 33 H 0.09 1.46 8.00 -2.39 -0.02 1.44 16 34 H 0.17 0.68 8.03 -2.91 -0.02 0.66 16 35 H 0.17 0.63 8.06 -2.92 -0.02 0.61 16 36 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -74.63 341.45 0.36 -74.27 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.89 Total: 36.72 kcal Atomic # 6 Polarization: 24.59 SS G_CDS: 5.40 Total: 29.98 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -6.61 Total: -124.70 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -0.11 Total: -53.38 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.75 Total: -2.07 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 1.90 Total: 39.86 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -74.63 0.36 -74.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345818525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.448 kcal (2) G-P(sol) polarization free energy of solvation -74.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds