Wall clock time and date at job start Tue Mar 31 2020 04:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99942 * 2 1 4 4 C 1.53001 * 109.47306 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47184 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46813 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46624 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00521 * 359.73045 * 7 6 5 9 9 N 1.34784 * 119.99774 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99971 * 359.72768 * 9 7 6 11 11 C 1.50703 * 109.47219 * 89.99688 * 10 9 7 12 12 H 1.07996 * 119.99587 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00012 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00204 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99711 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47341 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46996 * 119.99906 * 15 13 11 18 18 H 1.48509 * 109.46812 * 239.99713 * 15 13 11 19 19 C 1.46499 * 119.99893 * 179.72962 * 9 7 6 20 20 C 1.52996 * 109.47198 * 90.00083 * 19 9 7 21 21 N 1.46902 * 109.46980 * 179.97438 * 20 19 9 22 22 C 1.47015 * 111.00009 * 293.63325 * 21 20 19 23 23 C 1.53100 * 109.25969 * 177.60615 * 22 21 20 24 24 O 1.43020 * 109.25371 * 56.84894 * 23 22 21 25 25 C 1.43015 * 113.74045 * 301.33009 * 24 23 22 26 26 C 1.47013 * 110.99990 * 170.00210 * 21 20 19 27 27 H 1.09001 * 109.46949 * 300.00002 * 1 2 3 28 28 H 1.08993 * 109.46791 * 60.00092 * 1 2 3 29 29 H 1.08997 * 109.46890 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47431 * 59.99975 * 3 2 1 31 31 H 1.09006 * 109.47379 * 300.00193 * 3 2 1 32 32 H 1.08998 * 109.47065 * 59.99544 * 4 3 2 33 33 H 1.09001 * 109.46892 * 299.99808 * 4 3 2 34 34 H 1.09001 * 109.46902 * 60.00345 * 5 4 3 35 35 H 1.08993 * 109.47243 * 300.00020 * 5 4 3 36 36 H 1.09001 * 109.46782 * 60.00667 * 6 5 4 37 37 H 1.08993 * 109.47555 * 300.00224 * 6 5 4 38 38 H 1.08998 * 109.47416 * 209.99869 * 10 9 7 39 39 H 1.09008 * 109.47058 * 330.00468 * 10 9 7 40 40 H 0.97000 * 120.00290 * 180.02562 * 14 13 11 41 41 H 1.08997 * 109.46865 * 210.00034 * 19 9 7 42 42 H 1.08998 * 109.47058 * 329.99547 * 19 9 7 43 43 H 1.08997 * 109.47172 * 299.99762 * 20 19 9 44 44 H 1.08998 * 109.47554 * 59.99767 * 20 19 9 45 45 H 1.09006 * 109.50603 * 297.54506 * 22 21 20 46 46 H 1.09003 * 109.50663 * 57.67164 * 22 21 20 47 47 H 1.08994 * 109.50511 * 296.91476 * 23 22 21 48 48 H 1.08995 * 109.54235 * 176.80143 * 23 22 21 49 49 H 1.08996 * 109.50161 * 298.73680 * 25 24 23 50 50 H 1.09002 * 109.54009 * 178.63053 * 25 24 23 51 51 H 1.08999 * 109.50620 * 302.32609 * 26 21 20 52 52 H 1.08999 * 109.51226 * 62.41126 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5825 -0.0013 6 6 5.6830 2.4616 -0.0013 7 6 6.2959 3.8384 -0.0026 8 8 5.5830 4.8196 -0.0083 9 7 7.6363 3.9793 -0.0033 10 6 8.4975 2.7941 0.0032 11 6 8.7927 2.3799 -1.4154 12 1 8.3798 2.9430 -2.2393 13 6 9.5891 1.2816 -1.6614 14 7 10.0906 0.5951 -0.6580 15 14 9.9556 0.7687 -3.4198 16 1 9.2771 1.6983 -4.3582 17 1 11.4215 0.8121 -3.6527 18 1 9.4590 -0.6124 -3.6463 19 6 8.2321 5.3176 -0.0105 20 6 8.4396 5.7913 1.4294 21 7 9.0376 7.1331 1.4221 22 6 10.4006 7.0994 0.8722 23 6 10.9624 8.5229 0.8276 24 8 10.9223 9.0872 2.1412 25 6 9.6097 9.1360 2.7070 26 6 9.0342 7.7187 2.7705 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8568 0.6439 -0.8908 33 1 3.8575 0.6437 0.8891 34 1 3.8366 3.1236 0.8887 35 1 3.8358 3.1231 -0.8912 36 1 6.0046 1.9204 -0.8911 37 1 6.0047 1.9211 0.8888 38 1 9.4310 3.0261 0.5157 39 1 7.9909 1.9798 0.5214 40 1 10.6512 -0.1774 -0.8310 41 1 9.1929 5.2848 -0.5242 42 1 7.5669 6.0087 -0.5282 43 1 7.4788 5.8242 1.9430 44 1 9.1048 5.1003 1.9470 45 1 11.0335 6.4780 1.5059 46 1 10.3762 6.6860 -0.1361 47 1 10.3608 9.1306 0.1519 48 1 11.9931 8.4972 0.4740 49 1 8.9688 9.7616 2.0858 50 1 9.6614 9.5533 3.7126 51 1 8.0124 7.7574 3.1480 52 1 9.6446 7.1068 3.4347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346493727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:58 Heat of formation + Delta-G solvation = -138.022283 kcal Electronic energy + Delta-G solvation = -28739.343609 eV Core-core repulsion = 24738.622396 eV Total energy + Delta-G solvation = -4000.721213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.67008 -39.07530 -37.99018 -36.19558 -34.82788 -34.40933 -32.63180 -31.25458 -30.39026 -29.15170 -27.26484 -26.71604 -25.76931 -24.04223 -23.70278 -22.95276 -21.84036 -20.79534 -20.29619 -18.21687 -16.79407 -16.54488 -16.40349 -16.27268 -16.16714 -16.08688 -15.46539 -15.14467 -15.05495 -15.05210 -14.84549 -14.47531 -14.36075 -13.88685 -13.56644 -13.22476 -12.74113 -12.52864 -12.39268 -12.24126 -12.20794 -11.96782 -11.61699 -11.47590 -11.41662 -11.36198 -11.23748 -11.13866 -10.94225 -10.88873 -10.73722 -10.64741 -10.39344 -10.33852 -10.12407 -9.82119 -9.71853 -9.67294 -9.04309 -8.59924 -8.35354 -7.75595 -6.22533 -4.30186 3.19242 3.28294 3.31486 3.40356 3.54737 3.71898 3.83134 4.20382 4.32130 4.84477 4.98696 5.01275 5.03337 5.03425 5.10849 5.11431 5.21049 5.23715 5.25029 5.28832 5.40922 5.47129 5.50382 5.53262 5.53839 5.56364 5.63869 5.70017 5.75268 5.82466 5.90679 5.95182 5.98184 6.04662 6.10900 6.27454 6.31669 6.43892 6.54135 6.62148 6.72662 6.98247 7.04010 7.09544 7.10784 7.13610 7.51023 7.72558 8.01308 8.31079 8.75847 9.00985 9.38536 10.84164 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.007899 B = 0.003202 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3543.908711 B = 8741.783152 C =11804.659207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.062 3.938 4 C -0.120 4.120 5 C -0.097 4.097 6 C -0.134 4.134 7 C 0.517 3.483 8 O -0.575 6.575 9 N -0.597 5.597 10 C 0.238 3.762 11 C -0.538 4.538 12 H 0.062 0.938 13 C 0.066 3.934 14 N -0.891 5.891 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.282 1.282 19 C 0.126 3.874 20 C 0.045 3.955 21 N -0.533 5.533 22 C 0.012 3.988 23 C 0.065 3.935 24 O -0.389 6.389 25 C 0.065 3.935 26 C 0.018 3.982 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.032 0.968 39 H 0.040 0.960 40 H 0.265 0.735 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.037 0.963 45 H 0.044 0.956 46 H 0.093 0.907 47 H 0.059 0.941 48 H 0.097 0.903 49 H 0.059 0.941 50 H 0.095 0.905 51 H 0.084 0.916 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 7.756 4.959 11.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.015 4.015 4 C -0.157 4.157 5 C -0.135 4.135 6 C -0.173 4.173 7 C 0.306 3.694 8 O -0.456 6.456 9 N -0.327 5.327 10 C 0.118 3.882 11 C -0.577 4.577 12 H 0.080 0.920 13 C -0.137 4.137 14 N -0.529 5.529 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.207 1.207 19 C 0.002 3.998 20 C -0.083 4.083 21 N -0.259 5.259 22 C -0.116 4.116 23 C -0.012 4.012 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.111 0.889 47 H 0.077 0.923 48 H 0.115 0.885 49 H 0.077 0.923 50 H 0.113 0.887 51 H 0.103 0.897 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.729 8.287 4.792 12.303 hybrid contribution 0.473 -0.999 -0.533 1.227 sum -7.256 7.288 4.259 11.131 Atomic orbital electron populations 1.22710 0.81455 1.02487 0.99824 1.87887 1.19376 1.28602 1.95410 1.22601 0.94650 0.84138 1.00092 1.21554 0.92311 0.98186 1.03664 1.21217 0.94131 0.95194 1.02996 1.21587 0.94890 0.95468 1.05391 1.20577 0.82212 0.91217 0.75442 1.90591 1.61340 1.41106 1.52612 1.48209 1.05991 1.07702 1.70828 1.19439 0.89643 0.81545 0.97589 1.21524 1.31288 1.12553 0.92309 0.91999 1.24936 0.95343 0.96004 0.97436 1.69926 1.33396 1.18881 1.30684 0.86480 0.78158 0.78621 0.84486 1.19627 1.20863 1.20747 1.21142 0.99197 0.84664 0.94805 1.22504 0.99227 0.87512 0.99105 1.62145 1.19385 1.22785 1.21577 1.22882 0.89195 0.97681 1.01855 1.22681 1.01500 0.92653 0.84388 1.87956 1.28517 1.82720 1.31594 1.22640 0.84158 0.95430 0.98952 1.22759 1.01726 0.96301 0.90227 0.94256 0.94212 0.89845 0.93402 0.93323 0.90826 0.91067 0.91706 0.91432 0.87725 0.89325 0.94963 0.94233 0.92538 0.90642 0.90220 0.90641 0.94456 0.93761 0.88874 0.92262 0.88494 0.92301 0.88711 0.89729 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -5.16 10.70 -35.23 -0.38 -5.53 16 3 C 0.06 0.75 5.94 37.16 0.22 0.97 16 4 C -0.12 -1.60 5.58 -26.73 -0.15 -1.75 16 5 C -0.10 -1.45 4.50 -26.73 -0.12 -1.57 16 6 C -0.13 -2.34 4.26 -27.88 -0.12 -2.46 16 7 C 0.52 10.40 7.67 -10.98 -0.08 10.32 16 8 O -0.58 -12.52 15.56 5.56 0.09 -12.43 16 9 N -0.60 -12.18 2.46 -175.06 -0.43 -12.61 16 10 C 0.24 5.44 4.96 -5.19 -0.03 5.42 16 11 C -0.54 -13.59 9.27 -34.44 -0.32 -13.91 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -24.04 13.29 55.43 0.74 -23.30 16 15 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 C 0.13 2.31 5.34 -4.04 -0.02 2.29 16 20 C 0.05 0.73 5.28 -3.82 -0.02 0.71 16 21 N -0.53 -7.63 4.73 -234.31 -1.11 -8.74 16 22 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 23 C 0.06 0.76 7.01 37.21 0.26 1.02 16 24 O -0.39 -5.02 10.83 -35.23 -0.38 -5.40 16 25 C 0.07 0.72 7.01 37.21 0.26 0.98 16 26 C 0.02 0.23 5.64 -3.71 -0.02 0.20 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.10 1.95 7.99 -51.93 -0.42 1.54 16 37 H 0.09 1.49 7.39 -51.93 -0.38 1.10 16 38 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 39 H 0.04 0.93 6.44 -51.92 -0.33 0.60 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 41 H 0.08 1.39 6.44 -51.93 -0.33 1.05 16 42 H 0.08 1.54 7.42 -51.93 -0.39 1.15 16 43 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 44 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.25 6.38 -51.93 -0.33 0.92 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 52 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 415.36 15.07 6.26 6.26 Total: -1.00 -29.44 415.36 -9.12 -38.56 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -9.75 Total: 2.64 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 0.86 Total: 5.37 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.80 Total: -44.65 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.67 Total: -23.37 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -29.44 -9.12 -38.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346493727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.461 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds