Wall clock time and date at job start Tue Mar 31 2020 04:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47175 * 2 1 4 4 C 1.42905 * 114.00263 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47196 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46813 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46624 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00521 * 359.73045 * 7 6 5 9 9 N 1.34784 * 119.99774 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99971 * 359.72768 * 9 7 6 11 11 C 1.50703 * 109.47219 * 89.99688 * 10 9 7 12 12 H 1.07996 * 119.99587 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00012 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00204 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99711 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47341 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.46996 * 119.99906 * 15 13 11 18 18 H 1.48509 * 109.46812 * 239.99713 * 15 13 11 19 19 C 1.46499 * 119.99893 * 179.72962 * 9 7 6 20 20 C 1.52996 * 109.47198 * 90.00083 * 19 9 7 21 21 N 1.46902 * 109.46980 * 179.97438 * 20 19 9 22 22 C 1.47015 * 111.00009 * 293.63325 * 21 20 19 23 23 C 1.53100 * 109.25969 * 177.60615 * 22 21 20 24 24 O 1.43020 * 109.25371 * 56.84894 * 23 22 21 25 25 C 1.43015 * 113.74045 * 301.33009 * 24 23 22 26 26 C 1.47013 * 110.99990 * 170.00210 * 21 20 19 27 27 H 1.08998 * 109.46743 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47201 * 300.00201 * 1 2 3 29 29 H 1.09004 * 109.46839 * 60.00292 * 1 2 3 30 30 H 1.09002 * 109.47554 * 240.00199 * 2 1 3 31 31 H 1.09003 * 109.47533 * 120.00332 * 2 1 3 32 32 H 1.08998 * 109.46927 * 59.99870 * 4 3 2 33 33 H 1.09001 * 109.47019 * 300.00142 * 4 3 2 34 34 H 1.09001 * 109.46902 * 60.00507 * 5 4 3 35 35 H 1.08993 * 109.47243 * 300.00182 * 5 4 3 36 36 H 1.09001 * 109.46782 * 60.00667 * 6 5 4 37 37 H 1.08993 * 109.47555 * 300.00224 * 6 5 4 38 38 H 1.08998 * 109.47416 * 209.99869 * 10 9 7 39 39 H 1.09008 * 109.47058 * 330.00468 * 10 9 7 40 40 H 0.97000 * 120.00290 * 180.02562 * 14 13 11 41 41 H 1.08997 * 109.46865 * 210.00034 * 19 9 7 42 42 H 1.08998 * 109.47058 * 329.99547 * 19 9 7 43 43 H 1.08997 * 109.47172 * 299.99762 * 20 19 9 44 44 H 1.08998 * 109.47554 * 59.99767 * 20 19 9 45 45 H 1.09006 * 109.50603 * 297.54506 * 22 21 20 46 46 H 1.09003 * 109.50663 * 57.67164 * 22 21 20 47 47 H 1.08994 * 109.50511 * 296.91476 * 23 22 21 48 48 H 1.08995 * 109.54235 * 176.80143 * 23 22 21 49 49 H 1.08996 * 109.50161 * 298.73680 * 25 24 23 50 50 H 1.09002 * 109.54009 * 178.63053 * 25 24 23 51 51 H 1.08999 * 109.50620 * 302.32609 * 26 21 20 52 52 H 1.08999 * 109.51226 * 62.41126 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 6 5.3507 3.0592 0.0024 7 6 5.7391 4.5152 0.0024 8 8 4.8807 5.3720 -0.0035 9 7 7.0407 4.8654 0.0029 10 6 8.0777 3.8306 0.0095 11 6 8.4355 3.4689 -1.4090 12 1 7.9398 3.9605 -2.2330 13 6 9.3950 2.5098 -1.6548 14 7 9.9976 1.9102 -0.6514 15 14 9.8391 2.0621 -3.4132 16 1 9.0235 2.8739 -4.3517 17 1 11.2801 2.3359 -3.6448 18 1 9.5663 0.6201 -3.6408 19 6 7.4184 6.2809 -0.0032 20 6 7.5475 6.7804 1.4372 21 7 7.9269 8.1996 1.4311 22 6 9.2786 8.3813 0.8824 23 6 9.6094 9.8755 0.8390 24 8 9.4799 10.4255 2.1528 25 6 8.1756 10.2668 2.7175 26 6 7.8303 8.7765 2.7798 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8340 0.9765 -0.8891 33 1 3.8333 0.9767 0.8908 34 1 3.4223 3.4216 0.8912 35 1 3.4230 3.4222 -0.8887 36 1 5.7541 2.5759 -0.8874 37 1 5.7527 2.5755 0.8926 38 1 8.9627 4.2063 0.5230 39 1 7.7052 2.9463 0.5269 40 1 10.6730 1.2357 -0.8243 41 1 8.3728 6.4000 -0.5160 42 1 6.6531 6.8589 -0.5210 43 1 6.5931 6.6613 1.9500 44 1 8.3129 6.2024 1.9551 45 1 10.0009 7.8668 1.5163 46 1 9.3204 7.9698 -0.1261 47 1 8.9201 10.3813 0.1630 48 1 10.6316 10.0125 0.4862 49 1 7.4446 10.7841 2.0960 50 1 8.1602 10.6864 3.7233 51 1 6.8149 8.6537 3.1564 52 1 8.5289 8.2679 3.4442 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346523130.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:54 Heat of formation + Delta-G solvation = -137.282848 kcal Electronic energy + Delta-G solvation = -28772.046533 eV Core-core repulsion = 24771.357384 eV Total energy + Delta-G solvation = -4000.689149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.67061 -39.09189 -37.96587 -36.16529 -34.80412 -33.55235 -32.63867 -31.25844 -31.04814 -29.81586 -27.28109 -26.92922 -25.31278 -24.02896 -23.02667 -22.82038 -22.28256 -20.97272 -20.29175 -18.28186 -16.87701 -16.61946 -16.50880 -16.28529 -16.16361 -16.11217 -15.39495 -15.10345 -14.99361 -14.96372 -14.50162 -14.45100 -14.10237 -13.85509 -13.55669 -13.13103 -12.73390 -12.67810 -12.47599 -12.28085 -12.19700 -11.95309 -11.67997 -11.51475 -11.44555 -11.39694 -11.35530 -11.25290 -10.97201 -10.88913 -10.72819 -10.67618 -10.47341 -10.39859 -10.14356 -9.83273 -9.67717 -9.51911 -9.07119 -8.62601 -8.34908 -7.76826 -6.25172 -4.32838 3.16671 3.25916 3.29444 3.38901 3.50040 3.73034 3.84677 4.21082 4.31032 4.85060 4.95363 4.99192 5.01805 5.06801 5.08118 5.12002 5.23202 5.24649 5.25463 5.30000 5.42935 5.46543 5.52086 5.54501 5.55740 5.63270 5.75709 5.75928 5.76981 5.81619 5.82687 5.86046 5.95363 5.95715 5.98879 6.17168 6.29718 6.43535 6.50408 6.58797 6.69977 6.98738 7.04037 7.09959 7.11056 7.29018 7.49494 7.70190 7.98865 8.29303 8.73625 8.99615 9.35954 10.81425 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.007862 B = 0.003248 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.382570 B = 8619.428543 C =11697.690739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.391 6.391 4 C 0.062 3.938 5 C -0.099 4.099 6 C -0.132 4.132 7 C 0.518 3.482 8 O -0.571 6.571 9 N -0.597 5.597 10 C 0.238 3.762 11 C -0.538 4.538 12 H 0.062 0.938 13 C 0.066 3.934 14 N -0.891 5.891 15 Si 0.895 3.105 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.126 3.874 20 C 0.045 3.955 21 N -0.533 5.533 22 C 0.012 3.988 23 C 0.065 3.935 24 O -0.389 6.389 25 C 0.065 3.935 26 C 0.018 3.982 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.033 0.967 39 H 0.039 0.961 40 H 0.265 0.735 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.037 0.963 45 H 0.044 0.956 46 H 0.093 0.907 47 H 0.059 0.941 48 H 0.097 0.903 49 H 0.059 0.941 50 H 0.095 0.905 51 H 0.085 0.915 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 4.462 4.957 9.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.310 6.310 4 C -0.014 4.014 5 C -0.137 4.137 6 C -0.172 4.172 7 C 0.307 3.693 8 O -0.452 6.452 9 N -0.327 5.327 10 C 0.118 3.882 11 C -0.577 4.577 12 H 0.080 0.920 13 C -0.137 4.137 14 N -0.529 5.529 15 Si 0.722 3.278 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.002 3.998 20 C -0.084 4.084 21 N -0.259 5.259 22 C -0.116 4.116 23 C -0.012 4.012 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.111 0.889 47 H 0.077 0.923 48 H 0.115 0.885 49 H 0.077 0.923 50 H 0.113 0.887 51 H 0.103 0.897 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.633 5.255 4.789 10.431 hybrid contribution 1.126 -1.422 -0.533 1.891 sum -6.507 3.832 4.256 8.668 Atomic orbital electron populations 1.21738 0.94031 1.01947 1.03083 1.22426 0.95372 0.84280 0.99999 1.87876 1.21769 1.25954 1.95449 1.22562 0.80491 0.98055 1.00302 1.21209 0.94530 0.93807 1.04143 1.21493 0.95532 0.94812 1.05375 1.20441 0.82273 0.90989 0.75614 1.90611 1.49756 1.52519 1.52322 1.48189 1.06699 1.06951 1.70910 1.19438 0.85649 0.85570 0.97572 1.21539 1.21901 1.21887 0.92342 0.91953 1.24938 0.95649 0.95711 0.97440 1.69927 1.26100 1.26224 1.30679 0.86481 0.78401 0.78383 0.84491 1.19591 1.20828 1.20801 1.21147 1.01462 0.82342 0.94834 1.22505 1.00566 0.86212 0.99083 1.62142 1.25248 1.16889 1.21608 1.22881 0.89527 0.97348 1.01851 1.22681 1.01951 0.92203 0.84392 1.87955 1.31477 1.79777 1.31585 1.22642 0.84910 0.94662 0.98971 1.22760 1.02040 0.96007 0.90203 0.91345 0.91934 0.91900 0.93505 0.93575 0.93073 0.93342 0.91005 0.90734 0.87680 0.89276 0.94904 0.94298 0.92546 0.90613 0.90163 0.90604 0.94462 0.93774 0.88880 0.92252 0.88502 0.92284 0.88706 0.89705 0.94076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 2 C 0.06 0.62 6.66 37.16 0.25 0.87 16 3 O -0.39 -5.66 10.34 -35.23 -0.36 -6.02 16 4 C 0.06 0.88 5.94 37.16 0.22 1.10 16 5 C -0.10 -1.59 4.87 -26.73 -0.13 -1.72 16 6 C -0.13 -2.32 4.26 -27.88 -0.12 -2.44 16 7 C 0.52 10.51 7.67 -10.98 -0.08 10.43 16 8 O -0.57 -12.67 15.56 5.56 0.09 -12.58 16 9 N -0.60 -12.16 2.46 -175.06 -0.43 -12.59 16 10 C 0.24 5.39 4.96 -5.19 -0.03 5.37 16 11 C -0.54 -13.47 9.27 -34.44 -0.32 -13.79 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -23.78 13.29 55.43 0.74 -23.04 16 15 Si 0.89 20.00 29.54 -169.99 -5.02 14.97 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 C 0.13 2.32 5.34 -4.04 -0.02 2.30 16 20 C 0.05 0.73 5.28 -3.82 -0.02 0.71 16 21 N -0.53 -7.66 4.73 -234.31 -1.11 -8.77 16 22 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 23 C 0.06 0.76 7.01 37.21 0.26 1.02 16 24 O -0.39 -5.04 10.83 -35.23 -0.38 -5.42 16 25 C 0.07 0.72 7.01 37.21 0.26 0.98 16 26 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 35 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.10 1.93 7.99 -51.93 -0.42 1.52 16 37 H 0.09 1.47 7.39 -51.93 -0.38 1.08 16 38 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 39 H 0.04 0.90 6.44 -51.92 -0.33 0.57 16 40 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 41 H 0.08 1.39 6.44 -51.93 -0.33 1.05 16 42 H 0.08 1.55 7.42 -51.93 -0.39 1.17 16 43 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 44 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.25 6.38 -51.93 -0.33 0.92 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 52 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 415.72 15.07 6.26 6.26 Total: -1.00 -29.23 415.72 -9.45 -38.68 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -9.75 Total: 2.76 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 0.51 Total: 5.75 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -0.80 Total: -44.41 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.66 Total: -24.03 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -29.23 -9.45 -38.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346523130.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.607 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds