Wall clock time and date at job start Tue Mar 31 2020 05:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 117.00259 * 2 1 4 4 O 1.20820 * 120.00170 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99982 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47249 * 179.97438 * 5 3 2 7 7 C 1.36933 * 120.00132 * 275.00338 * 6 5 3 8 8 H 1.08002 * 120.00480 * 141.20003 * 7 6 5 9 9 C 1.38814 * 120.00269 * 321.19227 * 7 6 5 10 10 N 1.31617 * 119.99615 * 339.12798 * 9 7 6 11 11 Si 1.86799 * 120.00443 * 159.11803 * 9 7 6 12 12 H 1.48500 * 109.46888 * 90.00416 * 11 9 7 13 13 H 1.48492 * 109.47548 * 210.00845 * 11 9 7 14 14 H 1.48502 * 109.46804 * 330.01065 * 11 9 7 15 15 S 1.65598 * 120.00029 * 94.99867 * 6 5 3 16 16 O 1.42100 * 106.40385 * 151.15896 * 15 6 5 17 17 O 1.42102 * 106.40173 * 18.24086 * 15 6 5 18 18 C 1.76202 * 107.22140 * 264.70425 * 15 6 5 19 19 C 1.38268 * 119.93957 * 270.29912 * 18 15 6 20 20 C 1.38146 * 120.05024 * 180.29742 * 19 18 15 21 21 C 1.38729 * 119.94505 * 359.42304 * 20 19 18 22 22 O 1.35902 * 120.05849 * 180.30040 * 21 20 19 23 23 C 1.42902 * 117.00296 * 179.97438 * 22 21 20 24 24 C 1.38733 * 119.89007 * 0.27583 * 21 20 19 25 25 C 1.38146 * 119.94198 * 359.97438 * 24 21 20 26 26 H 1.08998 * 109.46533 * 300.00157 * 1 2 3 27 27 H 1.08998 * 109.46694 * 59.99811 * 1 2 3 28 28 H 1.08995 * 109.47267 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47402 * 59.99654 * 5 3 2 30 30 H 1.08996 * 109.47327 * 299.99898 * 5 3 2 31 31 H 0.97009 * 120.00131 * 179.97438 * 10 9 7 32 32 H 1.08001 * 119.97615 * 0.02562 * 19 18 15 33 33 H 1.08002 * 120.02553 * 179.69692 * 20 19 18 34 34 H 1.08997 * 109.46848 * 60.00051 * 23 22 21 35 35 H 1.08998 * 109.46779 * 179.97438 * 23 22 21 36 36 H 1.08992 * 109.47166 * 299.99897 * 23 22 21 37 37 H 1.07999 * 120.03068 * 180.02562 * 24 21 20 38 38 H 1.08001 * 119.97227 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9819 2.6795 -0.0011 7 6 4.0764 3.3652 -1.1826 8 1 3.7635 4.3976 -1.2345 9 6 4.5746 2.7334 -2.3138 10 7 5.3220 1.6570 -2.1909 11 14 4.1840 3.4106 -4.0104 12 1 5.2265 4.3924 -4.4034 13 1 4.1562 2.2978 -4.9932 14 1 2.8588 4.0801 -3.9830 15 16 4.3370 3.4384 1.4273 16 8 5.2944 4.4428 1.1208 17 8 4.5671 2.4107 2.3813 18 6 2.8797 4.2819 1.9463 19 6 2.6545 5.5843 1.5403 20 6 1.5157 6.2499 1.9509 21 6 0.5919 5.6064 2.7614 22 8 -0.5322 6.2569 3.1617 23 6 -1.4393 5.5323 3.9948 24 6 0.8171 4.2975 3.1623 25 6 1.9600 3.6380 2.7533 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.9558 0.7807 -0.8908 30 1 3.9565 0.7805 0.8891 31 1 5.6699 1.2152 -2.9814 32 1 3.3716 6.0832 0.9052 33 1 1.3426 7.2688 1.6374 34 1 -0.9312 5.2342 4.9119 35 1 -2.2913 6.1659 4.2414 36 1 -1.7871 4.6444 3.4670 37 1 0.0992 3.7943 3.7930 38 1 2.1361 2.6192 3.0654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351698206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:42 Heat of formation + Delta-G solvation = -148.822182 kcal Electronic energy + Delta-G solvation = -27324.138908 eV Core-core repulsion = 23260.484301 eV Total energy + Delta-G solvation = -4063.654607 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.01362 -39.67188 -37.27066 -36.30496 -36.15559 -35.03322 -34.77964 -31.51039 -30.99298 -30.12196 -28.47017 -27.42300 -26.39777 -24.03379 -22.70633 -22.24712 -20.54406 -18.69609 -18.29836 -17.67745 -16.97478 -16.76905 -16.46201 -16.11598 -15.82644 -15.72773 -15.38652 -14.76448 -14.54294 -14.41512 -13.70781 -13.42366 -13.23058 -13.11764 -12.91046 -12.83962 -12.70372 -12.00697 -11.91164 -11.63241 -11.46040 -11.24674 -11.22663 -11.11056 -11.00328 -10.82150 -10.79496 -10.62171 -10.30099 -10.25863 -10.20073 -9.76971 -9.14304 -8.82738 -8.35436 -7.88770 -6.38384 -4.10496 1.17855 1.51245 1.56089 3.00974 3.15917 3.17258 3.25630 3.32182 3.33020 3.72679 4.14091 4.42120 4.66720 4.77719 4.92233 4.98920 5.00070 5.01427 5.28790 5.31168 5.39612 5.45452 5.53030 5.56665 5.65000 5.83026 5.84977 6.04927 6.12739 6.20175 6.37669 6.50556 6.64689 6.85449 6.93230 7.14703 7.36642 7.53888 8.25083 8.56310 8.86195 9.26122 10.66705 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011934 B = 0.005564 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.758557 B = 5030.788577 C = 5613.779540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.432 3.568 4 O -0.495 6.495 5 C 0.126 3.874 6 N -0.822 5.822 7 C -0.290 4.290 8 H 0.091 0.909 9 C 0.043 3.957 10 N -0.862 5.862 11 Si 0.915 3.085 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.269 1.269 15 S 2.655 3.345 16 O -0.960 6.960 17 O -0.996 6.996 18 C -0.682 4.682 19 C 0.024 3.976 20 C -0.175 4.175 21 C 0.166 3.834 22 O -0.317 6.317 23 C 0.026 3.974 24 C -0.230 4.230 25 C 0.027 3.973 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.107 0.893 31 H 0.271 0.729 32 H 0.146 0.854 33 H 0.134 0.866 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.128 0.872 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.262 0.557 7.242 13.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.273 3.727 4 O -0.381 6.381 5 C -0.004 4.004 6 N -0.651 5.651 7 C -0.423 4.423 8 H 0.108 0.892 9 C -0.164 4.164 10 N -0.501 5.501 11 Si 0.741 3.259 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.194 1.194 15 S 2.751 3.249 16 O -0.950 6.950 17 O -0.986 6.986 18 C -0.767 4.767 19 C 0.005 3.995 20 C -0.194 4.194 21 C 0.120 3.880 22 O -0.230 6.230 23 C -0.069 4.069 24 C -0.250 4.250 25 C 0.007 3.993 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.167 0.833 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.146 0.854 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.677 0.973 7.646 13.168 hybrid contribution -1.472 0.248 -0.835 1.711 sum -12.149 1.220 6.811 13.981 Atomic orbital electron populations 1.23070 0.78401 1.02519 1.01854 1.86578 1.21961 1.35116 1.84925 1.25736 0.93935 0.80975 0.72085 1.90611 1.66867 1.36051 1.44531 1.21030 0.84124 0.87117 1.08144 1.52299 1.77118 1.16755 1.18917 1.18974 1.40160 0.97779 0.85436 0.89155 1.25383 0.93874 0.96993 1.00187 1.69907 1.29030 1.20505 1.30622 0.86124 0.79369 0.78749 0.81674 1.19939 1.20706 1.19357 1.03722 0.73880 0.73822 0.73433 1.93473 1.56877 1.60668 1.83949 1.93425 1.84841 1.57227 1.63075 1.31165 1.24521 1.07588 1.13442 1.20734 0.94609 0.91793 0.92365 1.20458 0.94899 1.01382 1.02666 1.19189 0.85695 0.90815 0.92299 1.86066 1.30267 1.41668 1.65046 1.23067 0.92364 0.97831 0.93623 1.21171 1.01055 0.94981 1.07770 1.20527 0.90442 0.98255 0.90041 0.92745 0.92480 0.89050 0.83287 0.87494 0.91888 0.83653 0.84813 0.92544 0.88290 0.92470 0.85377 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.56 10.56 -39.24 -0.41 -6.97 16 3 C 0.43 8.92 8.00 36.01 0.29 9.21 16 4 O -0.50 -10.95 15.66 -18.75 -0.29 -11.25 16 5 C 0.13 2.76 5.87 -5.20 -0.03 2.73 16 6 N -0.82 -19.75 2.33 -61.09 -0.14 -19.89 16 7 C -0.29 -7.39 8.79 -15.06 -0.13 -7.53 16 8 H 0.09 2.26 7.91 -52.49 -0.42 1.85 16 9 C 0.04 1.08 5.00 -17.43 -0.09 0.99 16 10 N -0.86 -22.11 11.46 55.49 0.64 -21.48 16 11 Si 0.91 19.90 29.60 -169.99 -5.03 14.87 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 15 S 2.66 61.00 5.64 -107.50 -0.61 60.40 16 16 O -0.96 -24.25 16.59 -57.17 -0.95 -25.20 16 17 O -1.00 -23.24 15.74 -57.17 -0.90 -24.14 16 18 C -0.68 -13.72 5.89 -39.56 -0.23 -13.95 16 19 C 0.02 0.45 9.51 -39.60 -0.38 0.07 16 20 C -0.17 -2.89 9.99 -39.43 -0.39 -3.28 16 21 C 0.17 2.63 6.69 -39.22 -0.26 2.37 16 22 O -0.32 -4.36 10.50 -19.43 -0.20 -4.57 16 23 C 0.03 0.24 9.81 101.05 0.99 1.23 16 24 C -0.23 -3.62 9.04 -39.43 -0.36 -3.98 16 25 C 0.03 0.48 9.17 -39.61 -0.36 0.12 16 26 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 27 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.15 3.46 5.56 -51.93 -0.29 3.17 16 30 H 0.11 2.18 6.88 -51.93 -0.36 1.82 16 31 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.15 2.59 7.62 -52.49 -0.40 2.19 16 33 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.50 7.66 -51.93 -0.40 0.11 16 37 H 0.13 1.59 6.30 -52.49 -0.33 1.26 16 38 H 0.13 2.25 7.61 -52.49 -0.40 1.85 16 LS Contribution 343.85 15.07 5.18 5.18 Total: -1.00 -31.92 343.85 -6.85 -38.76 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.23 Total: 4.73 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 0.11 Total: -10.44 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.49 Total: -41.37 kcal Atomic # 8 Polarization: -69.37 SS G_CDS: -2.76 Total: -72.13 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Atomic # 16 Polarization: 61.00 SS G_CDS: -0.61 Total: 60.40 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.92 -6.85 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351698206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.058 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds