Wall clock time and date at job start Tue Mar 31 2020 05:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86796 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47154 * 240.00450 * 3 2 1 5 5 H 1.48507 * 109.46818 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47337 * 120.00069 * 3 2 1 7 7 C 1.38953 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99432 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00081 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99459 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00368 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99771 * 180.02562 * 10 9 7 13 13 N 1.46489 * 109.47237 * 180.02562 * 12 10 9 14 14 S 1.65604 * 120.00119 * 165.26607 * 13 12 10 15 15 O 1.42105 * 106.39664 * 311.11020 * 14 13 12 16 16 O 1.42100 * 106.40463 * 178.19327 * 14 13 12 17 17 C 1.76194 * 107.21955 * 64.65280 * 14 13 12 18 18 C 1.38264 * 119.99907 * 242.70888 * 17 14 13 19 19 C 1.38211 * 120.00059 * 180.27605 * 18 17 14 20 20 C 1.38258 * 119.99574 * 359.49039 * 19 18 17 21 21 C 1.38209 * 120.00549 * 0.48666 * 20 19 18 22 22 C 1.38210 * 120.00319 * 62.73101 * 17 14 13 23 23 N 1.48021 * 119.99719 * 359.97438 * 22 17 14 24 24 O 1.21798 * 120.00007 * 173.10579 * 23 22 17 25 25 O 1.21795 * 120.00195 * 353.10127 * 23 22 17 26 26 H 0.97004 * 119.99879 * 359.97438 * 1 2 3 27 27 H 0.96998 * 119.99563 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.46846 * 59.99603 * 12 10 9 29 29 H 1.09004 * 109.46604 * 300.00579 * 12 10 9 30 30 H 0.97006 * 120.00579 * 345.25992 * 13 12 10 31 31 H 1.08000 * 119.99720 * 359.97438 * 18 17 14 32 32 H 1.08000 * 119.99981 * 179.72962 * 19 18 17 33 33 H 1.08008 * 119.99568 * 180.25598 * 20 19 18 34 34 H 1.07992 * 120.00726 * 179.76829 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2438 -4.8630 -0.0011 13 7 2.1957 -5.9764 -0.0004 14 16 1.6793 -7.5071 0.3640 15 8 0.9180 -7.3998 1.5591 16 8 2.8135 -8.3539 0.2384 17 6 0.5534 -7.9928 -0.9013 18 6 -0.7659 -8.2616 -0.5869 19 6 -1.6478 -8.6481 -1.5784 20 6 -1.2131 -8.7556 -2.8865 21 6 0.1055 -8.4865 -3.2010 22 6 0.9890 -8.1055 -2.2081 23 7 2.4014 -7.8176 -2.5448 24 8 2.8164 -8.0367 -3.6687 25 8 3.1486 -7.3615 -1.6979 26 1 -0.4850 0.8401 0.0004 27 1 0.3533 -2.3906 -0.0005 28 1 0.6174 -4.9205 -0.8913 29 1 0.6167 -4.9208 0.8886 30 1 3.1286 -5.8173 -0.2134 31 1 -1.1062 -8.1743 0.4344 32 1 -2.6772 -8.8623 -1.3321 33 1 -1.9033 -9.0537 -3.6620 34 1 0.4459 -8.5741 -4.2221 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352509765.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:47 Heat of formation + Delta-G solvation = -62.670958 kcal Electronic energy + Delta-G solvation = -26196.639388 eV Core-core repulsion = 22033.180235 eV Total energy + Delta-G solvation = -4163.459153 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.48223 -39.80756 -38.44035 -37.42664 -36.64858 -35.87579 -34.65633 -33.70763 -32.60061 -32.13113 -31.35151 -27.18960 -26.95969 -24.35938 -24.08803 -22.97886 -20.23086 -19.68630 -19.34065 -18.89370 -18.13005 -17.95726 -17.77034 -17.36261 -16.45456 -15.96949 -15.56909 -15.51639 -15.06982 -14.74978 -14.61292 -14.28572 -13.85470 -13.66085 -13.26403 -12.60620 -12.53103 -12.33335 -12.12410 -12.09939 -11.96543 -11.65153 -11.57218 -11.49769 -11.29169 -11.09540 -11.04962 -10.49175 -10.33915 -10.29016 -10.10958 -9.61406 -9.37943 -8.59325 -8.08627 -6.50849 -3.92212 -0.73848 0.09535 0.28200 0.98720 1.01862 2.55640 2.92519 3.15502 3.22670 3.27562 3.54438 3.73352 3.75976 3.97541 4.10950 4.23963 4.28081 4.47044 4.65533 4.83015 4.89778 5.00808 5.15433 5.21170 5.38477 5.40464 5.69443 5.71965 5.79047 6.09430 6.26871 7.22726 7.47450 7.54590 7.94575 8.47290 9.06680 9.39921 9.89019 10.66269 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.016476 B = 0.003565 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.077773 B = 7852.796736 C = 7992.996714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.554 5.554 10 C 0.436 3.564 11 O -0.581 6.581 12 C 0.102 3.898 13 N -1.078 6.078 14 S 2.703 3.297 15 O -0.952 6.952 16 O -0.934 6.934 17 C -0.632 4.632 18 C -0.018 4.018 19 C -0.090 4.090 20 C -0.069 4.069 21 C -0.070 4.070 22 C 0.046 3.954 23 N 0.013 4.987 24 O -0.136 6.136 25 O -0.131 6.131 26 H 0.274 0.726 27 H 0.394 0.606 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.438 0.562 31 H 0.168 0.832 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 -18.007 -5.436 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.190 5.190 10 C 0.220 3.780 11 O -0.466 6.466 12 C -0.028 4.028 13 N -0.847 5.847 14 S 2.784 3.216 15 O -0.942 6.942 16 O -0.924 6.924 17 C -0.714 4.714 18 C -0.038 4.038 19 C -0.109 4.109 20 C -0.088 4.088 21 C -0.090 4.090 22 C -0.037 4.037 23 N 0.534 4.466 24 O -0.355 6.355 25 O -0.346 6.346 26 H 0.084 0.916 27 H 0.228 0.772 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.281 0.719 31 H 0.185 0.815 32 H 0.171 0.829 33 H 0.173 0.827 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.980 -18.506 -4.557 21.068 hybrid contribution -0.069 1.070 -1.000 1.467 sum -9.049 -17.435 -5.557 20.415 Atomic orbital electron populations 1.69602 1.06000 1.28525 1.49816 1.25297 0.95663 0.99869 0.96865 0.85872 0.78767 0.80119 0.79222 1.19793 1.20925 1.19736 1.19705 0.93511 0.81981 1.48039 0.87655 1.41799 1.09307 1.04477 1.63389 1.19531 0.88386 0.84512 0.85570 1.90535 1.13489 1.86441 1.56148 1.20979 0.91550 0.87950 1.02347 1.55140 1.20522 1.21313 1.87696 1.02057 0.73094 0.73194 0.73255 1.93599 1.73106 1.86467 1.41028 1.93656 1.47369 1.65352 1.86053 1.31450 1.13785 1.13368 1.12788 1.21234 0.89290 0.91245 1.01984 1.21820 1.01093 0.95298 0.92678 1.21558 0.94377 0.95242 0.97593 1.21238 0.92872 0.94857 1.00028 1.20605 0.82300 1.06024 0.94753 1.43679 1.02656 0.99309 1.00962 1.94530 1.79112 1.55066 1.06754 1.94543 1.53453 1.44246 1.42390 0.91646 0.77230 0.91074 0.88567 0.71917 0.81464 0.82861 0.82720 0.82066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.64 13.05 55.50 0.72 -22.91 16 2 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 3 Si 0.93 20.58 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.55 5.29 -10.96 -0.06 -13.60 16 10 C 0.44 10.00 7.85 -10.98 -0.09 9.92 16 11 O -0.58 -15.34 15.30 5.54 0.08 -15.25 16 12 C 0.10 1.75 6.70 -5.20 -0.03 1.71 16 13 N -1.08 -18.21 4.68 -11.66 -0.05 -18.27 16 14 S 2.70 40.73 4.90 -107.50 -0.53 40.20 16 15 O -0.95 -15.09 16.46 -57.17 -0.94 -16.04 16 16 O -0.93 -16.44 15.33 -67.25 -1.03 -17.47 16 17 C -0.63 -7.56 5.87 -39.58 -0.23 -7.80 16 18 C -0.02 -0.15 9.55 -39.58 -0.38 -0.53 16 19 C -0.09 -0.50 10.05 -39.58 -0.40 -0.90 16 20 C -0.07 -0.37 10.05 -39.58 -0.40 -0.77 16 21 C -0.07 -0.59 9.56 -39.58 -0.38 -0.97 16 22 C 0.05 0.57 6.80 -79.95 -0.54 0.02 16 23 N 0.01 0.20 4.45 33.96 0.15 0.35 16 24 O -0.14 -2.04 18.47 -29.46 -0.54 -2.58 16 25 O -0.13 -2.28 11.69 -37.29 -0.44 -2.71 16 26 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.10 1.45 7.76 -51.93 -0.40 1.05 16 30 H 0.44 8.06 6.38 -34.47 -0.22 7.84 16 31 H 0.17 1.16 7.34 -52.49 -0.39 0.77 16 32 H 0.15 0.31 8.06 -52.49 -0.42 -0.12 16 33 H 0.16 0.27 8.06 -52.48 -0.42 -0.15 16 34 H 0.16 1.06 7.63 -52.49 -0.40 0.66 16 LS Contribution 318.83 15.07 4.80 4.80 Total: -1.00 -35.39 318.83 -8.05 -43.44 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -2.51 Total: 11.61 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.69 Total: -7.11 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.76 Total: -54.43 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -2.87 Total: -54.06 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 40.73 SS G_CDS: -0.53 Total: 40.20 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.39 -8.05 -43.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352509765.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.235 kcal (2) G-P(sol) polarization free energy of solvation -35.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds