Wall clock time and date at job start Tue Mar 31 2020 05:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99999 * 2 1 4 4 H 1.48495 * 109.47273 * 239.99544 * 3 2 1 5 5 H 1.48500 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47145 * 119.99735 * 3 2 1 7 7 C 1.38947 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00133 * 180.02562 * 7 2 1 9 9 N 1.37106 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99631 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00581 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99760 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47215 * 179.97438 * 12 10 9 14 14 S 1.65607 * 120.00127 * 164.99876 * 13 12 10 15 15 O 1.42107 * 106.40053 * 311.46118 * 14 13 12 16 16 O 1.42099 * 106.40001 * 178.53996 * 14 13 12 17 17 C 1.76198 * 107.21643 * 64.99603 * 14 13 12 18 18 C 1.38252 * 120.00213 * 269.97972 * 17 14 13 19 19 C 1.38212 * 119.99855 * 180.02562 * 18 17 14 20 20 C 1.38254 * 120.00343 * 359.95229 * 19 18 17 21 21 C 1.38218 * 119.99671 * 0.13884 * 20 19 18 22 22 N 1.48026 * 119.99635 * 179.97438 * 21 20 19 23 23 O 1.21802 * 119.99232 * 179.88761 * 22 21 20 24 24 O 1.21794 * 119.99957 * 359.88958 * 22 21 20 25 25 C 1.38215 * 119.99492 * 90.00282 * 17 14 13 26 26 H 0.96999 * 119.99779 * 0.02562 * 1 2 3 27 27 H 0.96995 * 119.99466 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47187 * 59.99575 * 12 10 9 29 29 H 1.09004 * 109.47073 * 299.99530 * 12 10 9 30 30 H 0.96998 * 120.00240 * 344.99898 * 13 12 10 31 31 H 1.08001 * 120.00307 * 359.97438 * 18 17 14 32 32 H 1.07999 * 119.99956 * 179.97438 * 19 18 17 33 33 H 1.07997 * 120.00492 * 180.02562 * 20 19 18 34 34 H 1.07995 * 120.00164 * 359.70284 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6964 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2438 -4.8629 0.0000 13 7 2.1957 -5.9764 -0.0005 14 16 1.6809 -7.5062 0.3700 15 8 0.9178 -7.3946 1.5636 16 8 2.8165 -8.3519 0.2496 17 6 0.5572 -7.9989 -0.8946 18 6 -0.7932 -7.7340 -0.7611 19 6 -1.6746 -8.1210 -1.7528 20 6 -1.2059 -8.7721 -2.8788 21 6 0.1438 -9.0385 -3.0114 22 7 0.6455 -9.7361 -4.2167 23 8 1.8353 -9.9690 -4.3344 24 8 -0.1313 -10.0770 -5.0906 25 6 1.0257 -8.6506 -2.0198 26 1 -0.4850 0.8401 -0.0004 27 1 0.3534 -2.3906 0.0005 28 1 0.6174 -4.9205 -0.8902 29 1 0.6168 -4.9209 0.8898 30 1 3.1276 -5.8178 -0.2179 31 1 -1.1594 -7.2255 0.1185 32 1 -2.7295 -7.9145 -1.6483 33 1 -1.8946 -9.0741 -3.6539 34 1 2.0811 -8.8535 -2.1261 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352513408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:02 Heat of formation + Delta-G solvation = -81.000709 kcal Electronic energy + Delta-G solvation = -25046.105060 eV Core-core repulsion = 20881.851070 eV Total energy + Delta-G solvation = -4164.253991 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.52707 -39.89054 -38.58495 -37.49847 -36.89387 -36.11688 -34.86295 -33.87007 -32.66853 -32.19856 -31.46872 -27.36464 -27.02920 -24.47241 -24.20870 -23.05171 -20.50466 -19.82020 -19.33838 -18.97310 -18.27787 -17.89146 -17.76518 -17.43007 -16.79208 -16.50036 -15.83150 -15.65562 -15.00100 -14.80152 -14.70408 -14.41949 -13.94077 -13.77039 -13.15511 -12.88617 -12.68369 -12.51616 -12.32172 -12.23097 -12.10604 -11.89482 -11.67300 -11.64280 -11.44316 -11.37176 -11.17736 -10.57003 -10.48973 -10.38478 -10.15451 -9.73777 -9.64650 -8.74056 -8.19584 -6.60664 -4.02638 -0.64991 -0.11166 0.14419 0.86344 0.97728 2.42123 2.80786 3.07747 3.16737 3.20711 3.43613 3.61932 3.70028 3.90160 4.01139 4.07945 4.16306 4.30575 4.54619 4.68121 4.81743 4.98024 5.05397 5.14951 5.21527 5.26232 5.54103 5.60768 5.61848 6.01154 6.10665 7.00837 7.28441 7.38038 7.83328 8.35307 8.96201 9.28355 9.76496 10.56067 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.015448 B = 0.002992 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.046807 B = 9355.591895 C = 9928.043043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.432 3.568 11 O -0.588 6.588 12 C 0.102 3.898 13 N -1.092 6.092 14 S 2.702 3.298 15 O -0.945 6.945 16 O -0.948 6.948 17 C -0.680 4.680 18 C 0.028 3.972 19 C -0.133 4.133 20 C -0.006 4.006 21 C -0.066 4.066 22 N 0.028 4.972 23 O -0.150 6.150 24 O -0.157 6.157 25 C 0.047 3.953 26 H 0.275 0.725 27 H 0.395 0.605 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.431 0.569 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.422 -15.455 -3.193 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.185 5.185 10 C 0.216 3.784 11 O -0.473 6.473 12 C -0.028 4.028 13 N -0.858 5.858 14 S 2.787 3.213 15 O -0.934 6.934 16 O -0.938 6.938 17 C -0.763 4.763 18 C 0.009 3.991 19 C -0.152 4.152 20 C -0.025 4.025 21 C -0.150 4.150 22 N 0.549 4.451 23 O -0.368 6.368 24 O -0.373 6.373 25 C 0.027 3.973 26 H 0.085 0.915 27 H 0.229 0.771 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.272 0.728 31 H 0.182 0.818 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.968 -15.462 -1.885 17.064 hybrid contribution -0.249 0.822 -1.188 1.466 sum -7.217 -14.641 -3.073 16.609 Atomic orbital electron populations 1.69591 1.06014 1.28718 1.49270 1.25312 0.95679 0.99949 0.96627 0.85866 0.78807 0.80043 0.79252 1.19751 1.20832 1.19698 1.19700 0.93512 0.81950 1.48399 0.87647 1.41797 1.09369 1.04493 1.62826 1.19511 0.88357 0.84554 0.85971 1.90526 1.13572 1.86455 1.56755 1.21015 0.91420 0.87569 1.02777 1.55086 1.20414 1.22208 1.88050 1.01928 0.73277 0.72452 0.73671 1.93622 1.72670 1.86042 1.41105 1.93628 1.48566 1.65047 1.86540 1.31573 1.12203 1.14940 1.17612 1.21554 0.90812 0.88940 0.97789 1.21438 1.01794 0.99242 0.92767 1.21413 0.92777 0.90428 0.97916 1.21219 0.95580 1.08506 0.89680 1.43521 1.00957 0.98929 1.01702 1.94594 0.99198 1.58482 1.84489 1.94542 1.53963 1.54598 1.34164 1.20800 1.01590 0.86832 0.88065 0.91499 0.77142 0.90319 0.88414 0.72843 0.81808 0.82223 0.82091 0.81165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.66 13.05 55.50 0.72 -21.94 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 19.84 29.55 -169.99 -5.02 14.82 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.31 -7.94 9.68 -14.93 -0.14 -8.09 16 8 H 0.11 2.87 7.16 -52.49 -0.38 2.50 16 9 N -0.55 -12.60 5.29 -10.96 -0.06 -12.65 16 10 C 0.43 9.07 7.85 -10.99 -0.09 8.99 16 11 O -0.59 -14.40 15.30 5.54 0.08 -14.31 16 12 C 0.10 1.48 6.70 -5.20 -0.03 1.45 16 13 N -1.09 -14.80 5.93 -11.66 -0.07 -14.86 16 14 S 2.70 32.30 5.74 -107.50 -0.62 31.68 16 15 O -0.94 -12.95 16.75 -57.17 -0.96 -13.91 16 16 O -0.95 -13.52 17.28 -57.17 -0.99 -14.51 16 17 C -0.68 -6.55 5.95 -39.58 -0.24 -6.79 16 18 C 0.03 0.21 9.52 -39.59 -0.38 -0.17 16 19 C -0.13 -0.78 10.05 -39.58 -0.40 -1.18 16 20 C -0.01 -0.05 9.56 -39.58 -0.38 -0.42 16 21 C -0.07 -0.68 6.85 -79.94 -0.55 -1.22 16 22 N 0.03 0.34 4.45 33.96 0.15 0.50 16 23 O -0.15 -2.02 18.45 -29.46 -0.54 -2.57 16 24 O -0.16 -1.93 18.45 -29.46 -0.54 -2.48 16 25 C 0.05 0.49 9.03 -39.58 -0.36 0.13 16 26 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 27 H 0.39 8.44 7.90 -40.82 -0.32 8.11 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.10 1.23 7.75 -51.93 -0.40 0.83 16 30 H 0.43 6.27 7.70 -34.47 -0.27 6.00 16 31 H 0.16 0.90 7.62 -52.49 -0.40 0.50 16 32 H 0.16 0.40 8.06 -52.49 -0.42 -0.02 16 33 H 0.16 0.85 7.61 -52.49 -0.40 0.45 16 34 H 0.17 1.70 7.17 -52.49 -0.38 1.32 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -33.72 329.68 -8.05 -41.76 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -2.52 Total: 10.22 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.66 Total: -6.71 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.75 Total: -48.96 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -2.95 Total: -47.78 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Atomic # 16 Polarization: 32.30 SS G_CDS: -0.62 Total: 31.68 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.72 -8.05 -41.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352513408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.236 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds