Wall clock time and date at job start Tue Mar 31 2020 05:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 120.00022 * 2 1 4 4 H 1.48503 * 109.46782 * 270.00189 * 3 2 1 5 5 H 1.48499 * 109.46914 * 29.99985 * 3 2 1 6 6 H 1.48504 * 109.46784 * 150.00275 * 3 2 1 7 7 C 1.38949 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99854 * 179.97438 * 7 2 1 9 9 N 1.37104 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99976 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00134 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99748 * 179.97438 * 10 9 7 13 13 N 1.46497 * 109.47210 * 180.02562 * 12 10 9 14 14 S 1.65598 * 120.00273 * 165.00079 * 13 12 10 15 15 O 1.42102 * 106.40211 * 311.45906 * 14 13 12 16 16 O 1.42100 * 106.40561 * 178.54084 * 14 13 12 17 17 C 1.76199 * 107.21888 * 64.99992 * 14 13 12 18 18 C 1.38238 * 119.99937 * 89.99935 * 17 14 13 19 19 C 1.38234 * 119.99693 * 179.97438 * 18 17 14 20 20 C 1.38234 * 120.00240 * 0.02562 * 19 18 17 21 21 N 1.48026 * 119.99930 * 179.97438 * 20 19 18 22 22 O 1.21793 * 119.99867 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99956 * 179.97438 * 21 20 19 24 24 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 25 25 C 1.38234 * 120.00000 * 269.98110 * 17 14 13 26 26 H 0.97004 * 119.99866 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99453 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.47176 * 60.00132 * 12 10 9 29 29 H 1.09000 * 109.47487 * 300.00046 * 12 10 9 30 30 H 0.97003 * 120.00017 * 344.99636 * 13 12 10 31 31 H 1.07991 * 120.00287 * 359.97438 * 18 17 14 32 32 H 1.08004 * 120.00214 * 179.97438 * 19 18 17 33 33 H 1.08004 * 119.99939 * 179.72815 * 24 20 19 34 34 H 1.08000 * 120.00005 * 359.97438 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8629 -0.0010 13 7 2.1956 -5.9765 -0.0017 14 16 1.6810 -7.5060 0.3698 15 8 0.9189 -7.3940 1.5639 16 8 2.8165 -8.3518 0.2490 17 6 0.5564 -7.9993 -0.8937 18 6 1.0242 -8.6516 -2.0192 19 6 0.1418 -9.0390 -3.0102 20 6 -1.2082 -8.7738 -2.8761 21 7 -2.1530 -9.1882 -3.9376 22 8 -1.7409 -9.7633 -4.9290 23 8 -3.3425 -8.9549 -3.8192 24 6 -1.6752 -8.1162 -1.7534 25 6 -0.7936 -7.7344 -0.7594 26 1 -0.4850 0.8401 0.0004 27 1 0.3533 -2.3906 0.0002 28 1 0.6160 -4.9205 -0.8903 29 1 0.6180 -4.9209 0.8897 30 1 3.1274 -5.8179 -0.2199 31 1 2.0789 -8.8584 -2.1243 32 1 0.5072 -9.5483 -3.8898 33 1 -2.7294 -7.9051 -1.6506 34 1 -1.1591 -7.2254 0.1202 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352528063.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:49 Heat of formation + Delta-G solvation = -80.165789 kcal Electronic energy + Delta-G solvation = -24897.363499 eV Core-core repulsion = 20733.145714 eV Total energy + Delta-G solvation = -4164.217786 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.61434 -39.88372 -38.59683 -37.53339 -36.98472 -36.15299 -34.88234 -33.88348 -32.78180 -32.03765 -31.47450 -27.37239 -27.28169 -24.48680 -23.84126 -23.23348 -20.00069 -19.89346 -19.77631 -19.07846 -18.44219 -18.26989 -17.95509 -17.62762 -16.52059 -15.86866 -15.68397 -15.58926 -15.02430 -14.75740 -14.49847 -14.42808 -14.27343 -13.92904 -13.75824 -12.70801 -12.54841 -12.41251 -12.31463 -12.18020 -12.13023 -11.97126 -11.77849 -11.66567 -11.52235 -11.43317 -11.20348 -10.58263 -10.52671 -10.39264 -9.99841 -9.75879 -9.66827 -8.75132 -8.20173 -6.60983 -4.03096 -0.92729 0.02379 0.33807 0.67691 0.88771 2.40955 2.78713 3.05127 3.17180 3.22301 3.40833 3.60922 3.65407 3.88382 3.92452 4.02715 4.32773 4.49651 4.62967 4.66907 4.87328 5.03837 5.05157 5.05879 5.16393 5.24431 5.53413 5.60759 5.64590 5.93984 6.09464 6.97620 7.19368 7.37737 7.82886 8.34570 8.95727 9.27901 9.75719 10.55740 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.003078 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.458360 B = 9095.097500 C =10488.121941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.432 3.568 11 O -0.589 6.589 12 C 0.102 3.898 13 N -1.091 6.091 14 S 2.699 3.301 15 O -0.944 6.944 16 O -0.948 6.948 17 C -0.637 4.637 18 C -0.015 4.015 19 C -0.077 4.077 20 C 0.004 3.996 21 N 0.020 4.980 22 O -0.149 6.149 23 O -0.147 6.147 24 C -0.075 4.075 25 C -0.018 4.018 26 H 0.275 0.725 27 H 0.395 0.605 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.431 0.569 31 H 0.166 0.834 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.849 -16.157 -3.601 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.216 3.784 11 O -0.474 6.474 12 C -0.028 4.028 13 N -0.857 5.857 14 S 2.784 3.216 15 O -0.933 6.933 16 O -0.938 6.938 17 C -0.720 4.720 18 C -0.034 4.034 19 C -0.097 4.097 20 C -0.079 4.079 21 N 0.542 4.458 22 O -0.367 6.367 23 O -0.365 6.365 24 C -0.095 4.095 25 C -0.037 4.037 26 H 0.085 0.915 27 H 0.229 0.771 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.271 0.729 31 H 0.184 0.816 32 H 0.181 0.819 33 H 0.182 0.818 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.681 -16.299 -2.347 16.684 hybrid contribution -0.646 0.894 -1.163 1.603 sum -3.328 -15.405 -3.510 16.146 Atomic orbital electron populations 1.69599 1.06022 1.28650 1.49188 1.25321 0.95678 0.99969 0.96626 0.85809 0.79290 0.80405 0.78531 1.20246 1.20743 1.19256 1.19741 0.93518 0.81927 1.48375 0.87601 1.41813 1.09407 1.04513 1.62713 1.19495 0.88336 0.84546 0.86023 1.90519 1.13572 1.86462 1.56878 1.21027 0.91393 0.87542 1.02881 1.55065 1.20407 1.22172 1.88018 1.02023 0.73328 0.72496 0.73772 1.93627 1.72616 1.85931 1.41171 1.93621 1.48552 1.65077 1.86568 1.31901 1.11818 1.10504 1.17766 1.21047 1.01235 0.91501 0.89661 1.21224 0.90001 0.97716 1.00755 1.21481 0.90346 1.05264 0.90775 1.43672 1.01793 0.98788 1.01526 1.94562 1.82574 1.40011 1.19534 1.94572 0.98871 1.58412 1.84616 1.21249 1.02934 0.94533 0.90763 1.21123 0.90496 0.93989 0.98100 0.91516 0.77116 0.90242 0.88386 0.72865 0.81628 0.81902 0.81752 0.81418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.71 13.05 55.50 0.72 -21.98 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 19.80 29.55 -169.99 -5.02 14.78 16 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.31 -7.92 9.68 -14.93 -0.14 -8.06 16 8 H 0.11 2.88 7.16 -52.49 -0.38 2.50 16 9 N -0.55 -12.57 5.29 -10.97 -0.06 -12.62 16 10 C 0.43 8.99 7.85 -10.99 -0.09 8.90 16 11 O -0.59 -14.24 15.30 5.55 0.08 -14.15 16 12 C 0.10 1.46 6.70 -5.20 -0.03 1.42 16 13 N -1.09 -14.16 5.93 -11.66 -0.07 -14.23 16 14 S 2.70 30.49 5.74 -107.50 -0.62 29.87 16 15 O -0.94 -12.75 16.75 -57.17 -0.96 -13.71 16 16 O -0.95 -12.49 17.28 -57.17 -0.99 -13.48 16 17 C -0.64 -5.77 5.95 -39.58 -0.24 -6.01 16 18 C -0.01 -0.12 9.52 -39.58 -0.38 -0.50 16 19 C -0.08 -0.63 9.56 -39.58 -0.38 -1.01 16 20 C 0.00 0.03 6.85 -79.95 -0.55 -0.51 16 21 N 0.02 0.23 4.45 33.96 0.15 0.38 16 22 O -0.15 -1.78 18.45 -29.46 -0.54 -2.33 16 23 O -0.15 -1.77 18.45 -29.46 -0.54 -2.31 16 24 C -0.08 -0.62 9.56 -39.58 -0.38 -1.00 16 25 C -0.02 -0.14 9.52 -39.58 -0.38 -0.52 16 26 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 27 H 0.40 8.48 7.90 -40.82 -0.32 8.15 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.10 1.24 7.75 -51.93 -0.40 0.83 16 30 H 0.43 5.95 7.70 -34.47 -0.27 5.68 16 31 H 0.17 1.02 7.62 -52.49 -0.40 0.62 16 32 H 0.16 1.01 7.61 -52.48 -0.40 0.61 16 33 H 0.16 1.06 7.61 -52.48 -0.40 0.66 16 34 H 0.17 1.06 7.62 -52.49 -0.40 0.66 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -33.19 329.68 -8.05 -41.24 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -2.52 Total: 10.28 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.66 Total: -6.70 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.75 Total: -48.46 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -2.95 Total: -45.98 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Atomic # 16 Polarization: 30.49 SS G_CDS: -0.62 Total: 29.87 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.19 -8.05 -41.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352528063.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.928 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds