Wall clock time and date at job start Tue Mar 31 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34753 * 117.00290 * 2 1 4 4 O 1.21508 * 119.99445 * 0.02562 * 3 2 1 5 5 C 1.47389 * 120.00220 * 179.97438 * 3 2 1 6 6 C 1.39778 * 120.19974 * 0.02840 * 5 3 2 7 7 C 1.37766 * 119.90303 * 179.97438 * 6 5 3 8 8 S 1.76198 * 119.84202 * 179.97438 * 7 6 5 9 9 O 1.42104 * 106.40026 * 203.54054 * 8 7 6 10 10 O 1.42094 * 106.40529 * 336.46164 * 8 7 6 11 11 N 1.65598 * 107.21631 * 90.00182 * 8 7 6 12 12 C 1.46504 * 119.99917 * 269.99478 * 11 8 7 13 13 C 1.36939 * 120.00112 * 90.00185 * 11 8 7 14 14 H 1.08001 * 120.00253 * 22.30702 * 13 11 8 15 15 C 1.38813 * 119.99821 * 202.31342 * 13 11 8 16 16 N 1.31618 * 120.00135 * 11.14302 * 15 13 11 17 17 Si 1.86802 * 120.00054 * 191.14127 * 15 13 11 18 18 H 1.48507 * 109.46860 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47232 * 119.99969 * 17 15 13 20 20 H 1.48499 * 109.47245 * 240.00293 * 17 15 13 21 21 C 1.38555 * 120.31096 * 359.97438 * 7 6 5 22 22 C 1.38063 * 120.40185 * 0.04112 * 21 7 6 23 23 C 1.38707 * 120.08854 * 359.96018 * 22 21 7 24 24 O 1.35642 * 120.15187 * 180.29539 * 23 22 21 25 25 C 1.42903 * 116.99940 * 359.72391 * 24 23 22 26 26 H 1.09007 * 109.46997 * 299.99866 * 1 2 3 27 27 H 1.09000 * 109.47110 * 59.99968 * 1 2 3 28 28 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.04449 * 359.95169 * 6 5 3 30 30 H 1.09005 * 109.47016 * 94.22282 * 12 11 8 31 31 H 1.09003 * 109.46899 * 214.22092 * 12 11 8 32 32 H 1.08999 * 109.47338 * 334.22294 * 12 11 8 33 33 H 0.96999 * 120.00163 * 179.97438 * 16 15 13 34 34 H 1.07997 * 119.80295 * 180.02562 * 21 7 6 35 35 H 1.07997 * 119.95293 * 179.97438 * 22 21 7 36 36 H 1.09000 * 109.46859 * 60.00133 * 25 24 23 37 37 H 1.09004 * 109.46966 * 179.97438 * 25 24 23 38 38 H 1.08999 * 109.46963 * 299.99490 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5357 1.2778 0.0006 6 6 4.3010 0.1081 0.0005 7 6 5.6764 0.1873 0.0005 8 16 6.6396 -1.2881 0.0011 9 8 7.9054 -0.9406 0.5455 10 8 5.8126 -2.3070 0.5459 11 7 6.9076 -1.6991 -1.5805 12 6 5.9638 -2.5746 -2.2798 13 6 8.0115 -1.2208 -2.2346 14 1 8.8732 -0.8936 -1.6718 15 6 8.0229 -1.1564 -3.6212 16 7 6.9095 -1.3431 -4.2979 17 14 9.6183 -0.8046 -4.5269 18 1 10.7184 -0.6348 -3.5438 19 1 9.9344 -1.9389 -5.4317 20 1 9.4707 0.4389 -5.3250 21 6 6.3057 1.4217 0.0000 22 6 5.5622 2.5850 0.0004 23 6 4.1765 2.5247 0.0004 24 8 3.4448 3.6668 -0.0052 25 6 4.1669 4.8999 -0.0050 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.8148 -0.8563 0.0008 30 1 5.2368 -1.9677 -2.8196 31 1 6.5065 -3.2042 -2.9850 32 1 5.4460 -3.2031 -1.5554 33 1 6.9173 -1.2977 -5.2668 34 1 7.3844 1.4742 -0.0004 35 1 6.0603 3.5433 0.0005 36 1 4.7977 4.9518 -0.8924 37 1 3.4637 5.7328 -0.0103 38 1 4.7900 4.9558 0.8876 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352878882.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:56 Heat of formation + Delta-G solvation = -151.238872 kcal Electronic energy + Delta-G solvation = -26746.616694 eV Core-core repulsion = 22682.857292 eV Total energy + Delta-G solvation = -4063.759402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.60203 -39.44345 -37.20366 -36.13723 -35.91351 -35.71441 -34.48958 -31.53676 -31.51839 -30.11557 -27.89408 -27.15450 -26.50021 -23.94243 -23.55939 -22.21918 -21.06394 -18.63059 -18.31444 -17.60530 -17.19654 -16.77841 -16.36844 -16.24939 -15.88608 -15.67276 -15.63757 -14.69075 -14.45303 -14.30067 -13.65245 -13.36867 -13.31237 -13.19859 -13.05146 -12.59660 -12.42719 -12.06794 -11.92333 -11.86910 -11.46353 -11.24698 -11.15965 -11.10793 -11.06112 -10.76887 -10.66468 -10.64504 -10.35402 -10.27864 -10.17797 -9.85085 -9.35363 -8.93850 -8.38539 -8.13550 -6.61190 -4.10038 0.91303 1.32575 1.71833 2.71382 2.83664 3.05553 3.12420 3.16482 3.18599 3.77186 3.94722 4.44296 4.72658 4.74884 4.88555 4.95219 5.05274 5.07542 5.15672 5.22221 5.23079 5.38748 5.45433 5.55786 5.58980 5.81913 5.90332 6.09111 6.27729 6.37958 6.47142 6.58597 6.81346 6.83974 7.07040 7.19168 7.31627 7.40399 7.96339 8.21416 8.59270 9.05458 10.34540 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.004618 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.468178 B = 6061.157439 C = 6608.003912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.355 6.355 3 C 0.514 3.486 4 O -0.499 6.499 5 C -0.191 4.191 6 C 0.065 3.935 7 C -0.704 4.704 8 S 2.540 3.460 9 O -0.984 6.984 10 O -0.998 6.998 11 N -0.805 5.805 12 C 0.120 3.880 13 C -0.247 4.247 14 H 0.117 0.883 15 C 0.032 3.968 16 N -0.835 5.835 17 Si 0.927 3.073 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.278 1.278 21 C 0.053 3.947 22 C -0.246 4.246 23 C 0.215 3.785 24 O -0.287 6.287 25 C 0.020 3.980 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.152 0.848 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.275 0.725 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.822 6.265 2.855 9.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.272 6.272 3 C 0.360 3.640 4 O -0.388 6.388 5 C -0.194 4.194 6 C 0.045 3.955 7 C -0.781 4.781 8 S 2.636 3.364 9 O -0.974 6.974 10 O -0.988 6.988 11 N -0.630 5.630 12 C -0.026 4.026 13 C -0.394 4.394 14 H 0.135 0.865 15 C -0.181 4.181 16 N -0.475 5.475 17 Si 0.752 3.248 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.204 1.204 21 C 0.034 3.966 22 C -0.266 4.266 23 C 0.167 3.833 24 O -0.198 6.198 25 C -0.075 4.075 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.170 0.830 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.268 6.197 3.671 9.548 hybrid contribution 0.166 1.280 -0.919 1.584 sum -6.102 7.477 2.752 10.036 Atomic orbital electron populations 1.23226 0.76384 1.03588 1.02292 1.86590 1.23218 1.32717 1.84678 1.20858 0.88676 0.81450 0.73023 1.90835 1.66459 1.35661 1.45830 1.18480 0.89455 0.92193 1.19233 1.21065 0.92178 0.97366 0.84857 1.32488 1.07454 1.22890 1.15245 1.11165 0.73391 0.74074 0.77765 1.93349 1.40468 1.84347 1.79224 1.93349 1.69312 1.56487 1.79608 1.54072 1.27332 1.48809 1.32798 1.21354 0.92707 0.92926 0.95609 1.20061 0.90248 1.38968 0.90131 0.86521 1.25765 0.98773 0.96038 0.97491 1.70112 1.26303 1.42518 1.08541 0.85834 0.81092 0.78365 0.79498 1.18469 1.20128 1.20356 1.20956 1.00552 0.90205 0.84928 1.21285 0.91846 1.00397 1.13037 1.19071 0.90001 0.85350 0.88921 1.86300 1.34621 1.12429 1.86414 1.23183 0.98263 0.84360 1.01673 0.92108 0.92016 0.88027 0.83012 0.92818 0.90635 0.93568 0.91476 0.83770 0.84403 0.92216 0.88051 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.57 101.05 1.07 1.52 16 2 O -0.36 -5.73 9.82 -40.64 -0.40 -6.13 16 3 C 0.51 9.39 7.89 34.46 0.27 9.66 16 4 O -0.50 -9.68 14.95 -26.59 -0.40 -10.08 16 5 C -0.19 -3.60 5.88 -104.86 -0.62 -4.21 16 6 C 0.06 1.26 9.08 -39.18 -0.36 0.90 16 7 C -0.70 -14.34 5.97 -39.64 -0.24 -14.58 16 8 S 2.54 57.46 5.65 -107.50 -0.61 56.85 16 9 O -0.98 -23.95 16.06 -57.17 -0.92 -24.87 16 10 O -1.00 -23.78 15.82 -57.17 -0.90 -24.69 16 11 N -0.81 -18.73 3.31 -66.68 -0.22 -18.95 16 12 C 0.12 2.62 8.92 59.85 0.53 3.15 16 13 C -0.25 -5.87 9.44 -15.06 -0.14 -6.01 16 14 H 0.12 2.75 7.16 -52.49 -0.38 2.37 16 15 C 0.03 0.73 5.13 -17.43 -0.09 0.64 16 16 N -0.83 -19.70 10.57 55.49 0.59 -19.11 16 17 Si 0.93 17.91 29.57 -169.99 -5.03 12.89 16 18 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 21 C 0.05 0.97 9.50 -39.53 -0.38 0.59 16 22 C -0.25 -3.98 9.03 -39.47 -0.36 -4.34 16 23 C 0.21 3.76 6.70 -38.67 -0.26 3.50 16 24 O -0.29 -4.65 8.57 -40.51 -0.35 -4.99 16 25 C 0.02 0.22 9.81 101.05 0.99 1.21 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.15 2.84 7.15 -52.49 -0.38 2.46 16 30 H 0.05 1.18 7.42 -51.93 -0.39 0.80 16 31 H 0.08 1.66 7.18 -51.93 -0.37 1.29 16 32 H 0.05 0.93 6.93 -51.93 -0.36 0.57 16 33 H 0.27 6.07 8.31 -40.82 -0.34 5.73 16 34 H 0.14 2.48 7.60 -52.49 -0.40 2.09 16 35 H 0.14 1.72 6.30 -52.49 -0.33 1.39 16 36 H 0.06 0.58 7.65 -51.93 -0.40 0.18 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -31.05 339.49 -6.90 -37.96 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.22 Total: 3.97 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 0.43 Total: -7.96 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.37 Total: -38.06 kcal Atomic # 8 Polarization: -67.80 SS G_CDS: -2.97 Total: -70.76 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 16 Polarization: 57.46 SS G_CDS: -0.61 Total: 56.85 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.05 -6.90 -37.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352878882.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.280 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds