Wall clock time and date at job start Tue Mar 31 2020 05:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39685 * 120.07669 * 2 1 4 4 C 1.47698 * 120.15264 * 359.97438 * 3 2 1 5 5 O 1.21472 * 119.99872 * 353.13139 * 4 3 2 6 6 N 1.34778 * 119.99830 * 173.12912 * 4 3 2 7 7 C 1.33326 * 119.99532 * 180.02562 * 6 4 3 8 8 H 1.08006 * 120.00432 * 0.02562 * 7 6 4 9 9 C 1.46784 * 119.99680 * 179.72339 * 7 6 4 10 10 N 1.29312 * 120.00313 * 0.27975 * 9 7 6 11 11 Si 1.86802 * 119.99965 * 180.27365 * 9 7 6 12 12 H 1.48507 * 109.46869 * 90.00557 * 11 9 7 13 13 H 1.48499 * 109.47220 * 210.00074 * 11 9 7 14 14 H 1.48491 * 109.47497 * 330.00411 * 11 9 7 15 15 C 1.39646 * 119.69558 * 179.72715 * 3 2 1 16 16 C 1.37955 * 119.84580 * 0.24390 * 15 3 2 17 17 S 1.76196 * 119.92633 * 180.02562 * 16 15 3 18 18 N 1.65594 * 107.21802 * 90.00427 * 17 16 15 19 19 O 1.42096 * 106.40119 * 203.54512 * 17 16 15 20 20 O 1.42098 * 106.40003 * 336.46301 * 17 16 15 21 21 C 1.38368 * 120.14934 * 0.02562 * 16 15 3 22 22 C 1.37908 * 120.07858 * 180.25480 * 2 1 3 23 23 N 1.48018 * 119.92391 * 0.02562 * 22 2 1 24 24 O 1.31702 * 119.99984 * 187.54418 * 23 22 2 25 25 O 1.31699 * 119.99966 * 7.54388 * 23 22 2 26 26 H 1.09004 * 109.47439 * 93.19738 * 1 2 3 27 27 H 1.09003 * 109.47044 * 213.19506 * 1 2 3 28 28 H 1.08999 * 109.47176 * 333.19730 * 1 2 3 29 29 H 0.96998 * 120.00205 * 0.02562 * 6 4 3 30 30 H 0.96998 * 120.00655 * 179.97438 * 10 9 7 31 31 H 1.07999 * 120.07878 * 180.22974 * 15 3 2 32 32 H 0.97003 * 119.99941 * 150.00419 * 18 17 16 33 33 H 0.97006 * 120.00075 * 330.00188 * 18 17 16 34 34 H 1.08005 * 119.84125 * 179.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.2088 0.0000 4 6 1.4737 2.4908 -0.0006 5 8 0.2656 2.4994 -0.1269 6 7 2.1449 3.6512 0.1391 7 6 1.4828 4.8084 0.1391 8 1 0.4085 4.8160 0.0276 9 6 2.2132 6.0718 0.2972 10 7 3.4993 6.0627 0.4311 11 14 1.2848 7.6927 0.3049 12 1 0.8934 8.0324 1.6966 13 1 2.1560 8.7648 -0.2399 14 1 0.0669 7.5697 -0.5357 15 6 3.6034 1.1995 0.0058 16 6 4.2820 -0.0016 0.0063 17 16 6.0439 -0.0158 0.0143 18 7 6.5269 -0.0232 1.5982 19 8 6.4375 -1.2675 -0.5311 20 8 6.4576 1.2318 -0.5256 21 6 3.5822 -1.1952 0.0007 22 6 2.1982 -1.1934 -0.0053 23 7 1.4581 -2.4753 -0.0116 24 8 2.1081 -3.6115 0.1331 25 8 0.1498 -2.4795 -0.1618 26 1 -0.3634 -0.0573 -1.0261 27 1 -0.3633 -0.8600 0.5627 28 1 -0.3633 0.9172 0.4634 29 1 3.1097 3.6444 0.2396 30 1 3.9821 6.8976 0.5353 31 1 4.1509 2.1304 0.0096 32 1 7.3609 -0.4504 1.8490 33 1 5.9758 0.3998 2.2753 34 1 4.1185 -2.1327 0.0007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353781628.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:27 Heat of formation + Delta-G solvation = -42.701430 kcal Electronic energy + Delta-G solvation = -25847.100372 eV Core-core repulsion = 21684.507163 eV Total energy + Delta-G solvation = -4162.593209 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59293 -38.79610 -37.61571 -37.33085 -36.01030 -34.92891 -34.42561 -33.42572 -32.97229 -32.25503 -31.65046 -28.10647 -26.26906 -25.39281 -23.24389 -22.28964 -20.66264 -19.59131 -18.98197 -18.54299 -17.99356 -17.62583 -17.17820 -16.54558 -16.41809 -16.04141 -15.62521 -15.33066 -15.20196 -14.99526 -14.39931 -14.12623 -13.35141 -13.08715 -12.57124 -12.49534 -12.44226 -12.36339 -12.30316 -12.24387 -12.11659 -12.04466 -11.52554 -11.42964 -11.12814 -10.89361 -10.74522 -10.66324 -10.64232 -10.26187 -10.10222 -9.76124 -9.24175 -8.83816 -8.41992 -7.27751 -4.08189 -0.62718 0.11161 0.39463 0.92998 1.17471 2.53883 2.84379 2.90519 2.94329 2.99363 3.45272 3.63446 3.83675 4.04144 4.27967 4.51785 4.58551 4.70882 4.71272 4.90739 4.97747 5.37709 5.43157 5.61364 5.75526 5.78914 5.89356 6.04535 6.20175 6.40054 6.59440 6.73976 6.80404 6.95854 7.41539 7.89095 8.56308 8.87352 9.61967 9.84384 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.011154 B = 0.004682 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.700815 B = 5978.853928 C = 8293.094524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.079 3.921 3 C -0.104 4.104 4 C 0.414 3.586 5 O -0.593 6.593 6 N -0.495 5.495 7 C -0.305 4.305 8 H 0.125 0.875 9 C 0.035 3.965 10 N -0.821 5.821 11 Si 0.944 3.056 12 H -0.268 1.268 13 H -0.275 1.275 14 H -0.258 1.258 15 C 0.008 3.992 16 C -0.676 4.676 17 S 2.709 3.291 18 N -1.246 6.246 19 O -0.959 6.959 20 O -0.947 6.947 21 C 0.022 3.978 22 C -0.030 4.030 23 N -0.009 5.009 24 O -0.191 6.191 25 O -0.162 6.162 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.129 0.871 29 H 0.391 0.609 30 H 0.295 0.705 31 H 0.158 0.842 32 H 0.422 0.578 33 H 0.420 0.580 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.106 -5.987 3.881 9.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.076 3.924 3 C -0.110 4.110 4 C 0.207 3.793 5 O -0.484 6.484 6 N -0.122 5.122 7 C -0.436 4.436 8 H 0.143 0.857 9 C -0.182 4.182 10 N -0.452 5.452 11 Si 0.768 3.232 12 H -0.193 1.193 13 H -0.200 1.200 14 H -0.181 1.181 15 C -0.014 4.014 16 C -0.762 4.762 17 S 2.795 3.205 18 N -0.921 5.921 19 O -0.948 6.948 20 O -0.936 6.936 21 C -0.001 4.001 22 C -0.118 4.118 23 N 0.466 4.534 24 O -0.379 6.379 25 O -0.356 6.356 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.147 0.853 29 H 0.226 0.774 30 H 0.107 0.893 31 H 0.175 0.825 32 H 0.252 0.748 33 H 0.247 0.753 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.313 -5.223 2.890 8.688 hybrid contribution -0.350 0.298 0.729 0.862 sum 5.963 -4.925 3.619 8.539 Atomic orbital electron populations 1.22064 0.87092 1.07568 1.04884 1.20282 0.99243 0.88850 0.84044 1.20213 0.92605 0.94712 1.03518 1.16906 0.87559 0.82175 0.92614 1.90461 1.12834 1.84812 1.60277 1.41089 1.10178 1.05562 1.55369 1.21099 0.94953 0.81701 1.45866 0.85742 1.27196 0.95177 1.01124 0.94658 1.68624 1.08397 1.31773 1.36410 0.85606 0.79773 0.78149 0.79656 1.19298 1.20029 1.18139 1.21456 0.94248 0.97126 0.88613 1.30654 1.26762 0.97866 1.20950 1.01536 0.72424 0.74108 0.72471 1.53088 1.35462 1.74910 1.28665 1.93609 1.80948 1.43767 1.76517 1.93666 1.79241 1.44522 1.76195 1.20551 0.91127 0.98841 0.89550 1.20103 0.91563 0.81509 1.18619 1.50297 1.02908 1.03778 0.96432 1.96258 1.68882 1.16659 1.56073 1.96198 0.89852 1.95453 1.54066 0.88809 0.89173 0.85297 0.77396 0.89280 0.82483 0.74787 0.75295 0.81672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 7.84 36.00 0.28 -2.51 16 2 C 0.08 1.38 5.92 -104.20 -0.62 0.77 16 3 C -0.10 -1.87 5.87 -104.97 -0.62 -2.49 16 4 C 0.41 8.93 7.63 -12.40 -0.09 8.84 16 5 O -0.59 -14.27 12.71 5.39 0.07 -14.20 16 6 N -0.50 -10.87 5.12 -10.61 -0.05 -10.92 16 7 C -0.30 -7.16 9.92 -13.45 -0.13 -7.29 16 8 H 0.12 3.07 7.19 -52.48 -0.38 2.69 16 9 C 0.03 0.76 5.69 -15.16 -0.09 0.67 16 10 N -0.82 -18.06 13.09 56.00 0.73 -17.33 16 11 Si 0.94 17.04 29.65 -169.99 -5.04 12.00 16 12 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 13 H -0.28 -4.85 7.11 56.52 0.40 -4.45 16 14 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 15 C 0.01 0.12 9.00 -39.16 -0.35 -0.23 16 16 C -0.68 -9.02 5.97 -39.64 -0.24 -9.26 16 17 S 2.71 31.24 6.28 -107.50 -0.67 30.57 16 18 N -1.25 -8.97 9.52 60.35 0.57 -8.40 16 19 O -0.96 -13.23 17.27 -57.17 -0.99 -14.21 16 20 O -0.95 -14.08 17.27 -57.17 -0.99 -15.07 16 21 C 0.02 0.31 9.05 -39.47 -0.36 -0.05 16 22 C -0.03 -0.48 6.85 -80.01 -0.55 -1.03 16 23 N -0.01 -0.15 4.98 33.93 0.17 0.02 16 24 O -0.19 -3.32 19.17 -31.57 -0.60 -3.92 16 25 O -0.16 -2.87 15.89 -31.57 -0.50 -3.37 16 26 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 27 H 0.09 1.47 5.52 -51.93 -0.29 1.18 16 28 H 0.13 2.49 5.15 -51.96 -0.27 2.22 16 29 H 0.39 7.99 6.06 -40.82 -0.25 7.74 16 30 H 0.30 5.94 8.26 -40.82 -0.34 5.61 16 31 H 0.16 2.26 6.01 -52.49 -0.32 1.95 16 32 H 0.42 2.14 8.96 -34.47 -0.31 1.83 16 33 H 0.42 2.28 8.96 -34.47 -0.31 1.97 16 34 H 0.17 2.08 7.13 -52.48 -0.37 1.71 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -30.39 317.41 -7.32 -37.72 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -2.04 Total: 14.93 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.76 Total: -12.59 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 1.42 Total: -36.63 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -3.01 Total: -50.77 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.04 Total: 12.00 kcal Atomic # 16 Polarization: 31.24 SS G_CDS: -0.67 Total: 30.57 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.39 -7.32 -37.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353781628.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.985 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds