Wall clock time and date at job start Tue Mar 31 2020 04:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 120.00375 * 2 1 4 4 C 1.50705 * 109.47079 * 270.00096 * 3 2 1 5 5 H 1.08009 * 119.99523 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00205 * 0.02562 * 6 4 3 8 8 Si 1.86810 * 119.99886 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46717 * 89.99929 * 8 6 4 10 10 H 1.48500 * 109.46959 * 209.99901 * 8 6 4 11 11 H 1.48497 * 109.47176 * 330.00184 * 8 6 4 12 12 C 1.34779 * 119.99400 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99640 * 179.72406 * 12 2 1 14 14 C 1.50696 * 120.00512 * 359.97438 * 12 2 1 15 15 C 1.52994 * 109.47177 * 179.72482 * 14 12 2 16 16 N 1.46899 * 109.46924 * 179.97438 * 15 14 12 17 17 C 1.46902 * 111.00294 * 293.95034 * 16 15 14 18 18 C 1.46905 * 111.00053 * 169.99791 * 16 15 14 19 19 C 1.53002 * 109.54030 * 33.70622 * 18 16 15 20 20 C 1.53005 * 109.47232 * 62.31771 * 19 18 16 21 21 O 1.42897 * 109.47209 * 177.83237 * 20 19 18 22 22 C 1.53176 * 109.54468 * 273.43992 * 18 16 15 23 23 C 1.53096 * 109.16230 * 183.15208 * 22 18 16 24 24 O 1.42896 * 109.41551 * 57.60510 * 23 22 18 25 25 C 1.42906 * 114.10257 * 298.84444 * 24 23 22 26 26 C 1.53093 * 109.41424 * 61.15662 * 25 24 23 27 27 H 1.08999 * 109.47379 * 270.00649 * 1 2 3 28 28 H 1.08998 * 109.47175 * 29.99826 * 1 2 3 29 29 H 1.08993 * 109.47564 * 150.00305 * 1 2 3 30 30 H 1.09006 * 109.47351 * 29.99589 * 3 2 1 31 31 H 1.08996 * 109.47287 * 150.00022 * 3 2 1 32 32 H 0.97006 * 119.99962 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.46875 * 299.72821 * 14 12 2 34 34 H 1.08999 * 109.46846 * 59.72096 * 14 12 2 35 35 H 1.08997 * 109.47495 * 299.99959 * 15 14 12 36 36 H 1.08999 * 109.47548 * 60.00043 * 15 14 12 37 37 H 1.09004 * 109.46757 * 69.57465 * 17 16 15 38 38 H 1.08993 * 109.47116 * 189.57234 * 17 16 15 39 39 H 1.09002 * 109.46927 * 309.57722 * 17 16 15 40 40 H 1.09004 * 109.47227 * 182.31475 * 19 18 16 41 41 H 1.09002 * 109.47477 * 302.31635 * 19 18 16 42 42 H 1.08996 * 109.46640 * 297.83079 * 20 19 18 43 43 H 1.09000 * 109.46953 * 57.82551 * 20 19 18 44 44 H 0.96699 * 114.00105 * 180.02562 * 21 20 19 45 45 H 1.08997 * 109.52241 * 303.05125 * 22 18 16 46 46 H 1.09000 * 109.52010 * 63.24535 * 22 18 16 47 47 H 1.09001 * 109.47734 * 297.62519 * 23 22 18 48 48 H 1.08999 * 109.48913 * 177.60163 * 23 22 18 49 49 H 1.08997 * 109.47535 * 301.17341 * 25 24 23 50 50 H 1.08998 * 109.48957 * 181.14538 * 25 24 23 51 51 H 1.08993 * 109.52264 * 182.48919 * 26 25 24 52 52 H 1.08994 * 109.57280 * 62.32805 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0973 1.0960 -2.2418 6 6 3.1261 2.8778 -1.6728 7 7 3.5535 3.6179 -0.6733 8 14 3.4380 3.4166 -3.4341 9 1 2.3078 4.2589 -3.9015 10 1 4.6980 4.2001 -3.4962 11 1 3.5561 2.2193 -4.3045 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1673 -0.0045 14 6 1.3853 -2.4723 0.0017 15 6 2.3794 -3.6352 -0.0048 16 7 1.6448 -4.9074 -0.0031 17 6 0.9056 -5.0868 1.2536 18 6 2.5500 -6.0383 -0.2473 19 6 3.9158 -5.7448 0.3768 20 6 3.7628 -5.5957 1.8918 21 8 5.0455 -5.3716 2.4804 22 6 2.7090 -6.2509 -1.7559 23 6 3.5901 -7.4789 -2.0003 24 8 3.0035 -8.6179 -1.3674 25 6 2.8734 -8.4953 0.0504 26 6 1.9636 -7.3082 0.3772 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5137 30 1 1.6085 2.0284 0.5138 31 1 3.1499 1.1383 0.5138 32 1 4.0297 4.4442 -0.8506 33 1 0.7626 -2.5315 0.8944 34 1 0.7545 -2.5285 -0.8855 35 1 3.0020 -3.5760 -0.8975 36 1 3.0101 -3.5791 0.8823 37 1 0.0814 -4.3745 1.2951 38 1 0.5113 -6.1018 1.3015 39 1 1.5754 -4.9169 2.0966 40 1 4.5986 -6.5662 0.1597 41 1 4.3150 -4.8204 -0.0408 42 1 3.1104 -4.7501 2.1096 43 1 3.3276 -6.5059 2.3044 44 1 5.0245 -5.2680 3.4416 45 1 1.7294 -6.4101 -2.2066 46 1 3.1771 -5.3725 -2.2002 47 1 4.5822 -7.3028 -1.5847 48 1 3.6719 -7.6603 -3.0720 49 1 3.8562 -8.3326 0.4928 50 1 2.4389 -9.4088 0.4561 51 1 1.8986 -7.1859 1.4583 52 1 0.9685 -7.4880 -0.0296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355009677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:07 Heat of formation + Delta-G solvation = -107.651103 kcal Electronic energy + Delta-G solvation = -30309.737536 eV Core-core repulsion = 26310.333316 eV Total energy + Delta-G solvation = -3999.404220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.12489 -39.00354 -37.84955 -36.56849 -34.80950 -33.42534 -32.57549 -31.78943 -30.41101 -29.80030 -27.84318 -27.00517 -25.77428 -24.56818 -23.51397 -22.87060 -22.72953 -21.25830 -18.85990 -18.40324 -17.49791 -17.11302 -16.56126 -16.34236 -16.20517 -16.11023 -15.42036 -15.19833 -14.96945 -14.92463 -14.57941 -14.37670 -14.09109 -13.68757 -13.53791 -13.18164 -13.05793 -12.78960 -12.44137 -12.31365 -12.17770 -11.95465 -11.88415 -11.79246 -11.62898 -11.58798 -11.37769 -11.23742 -11.13216 -10.93278 -10.75805 -10.56948 -10.48238 -10.42822 -10.14733 -10.05795 -9.77829 -9.61614 -8.87447 -8.43023 -8.34032 -7.62620 -6.03596 -4.08306 3.30524 3.36923 3.39906 3.46777 3.50414 3.63894 3.91609 4.11317 4.33668 4.46491 4.51973 4.68568 4.73777 4.85237 4.89838 4.95577 5.01216 5.10094 5.13788 5.14429 5.23949 5.27144 5.30597 5.33848 5.37960 5.41048 5.49287 5.60987 5.62673 5.69179 5.71836 5.74015 5.79100 5.86888 5.92907 6.00338 6.04963 6.12088 6.19659 6.23565 6.90774 6.95507 6.96468 7.07197 7.41250 7.44994 7.55686 7.92924 8.24495 8.43833 8.91317 9.11663 9.56901 11.04514 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.016459 B = 0.002816 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.831466 B = 9940.009766 C =10225.228247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.503 3.497 13 O -0.544 6.544 14 C -0.135 4.135 15 C 0.065 3.935 16 N -0.529 5.529 17 C -0.001 4.001 18 C 0.119 3.881 19 C -0.154 4.154 20 C 0.064 3.936 21 O -0.571 6.571 22 C -0.136 4.136 23 C 0.058 3.942 24 O -0.382 6.382 25 C 0.060 3.940 26 C -0.156 4.156 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.044 0.956 44 H 0.378 0.622 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.053 0.947 48 H 0.096 0.904 49 H 0.052 0.948 50 H 0.093 0.907 51 H 0.078 0.922 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 -23.550 5.296 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.289 3.711 13 O -0.422 6.422 14 C -0.175 4.175 15 C -0.062 4.062 16 N -0.253 5.253 17 C -0.148 4.148 18 C 0.029 3.971 19 C -0.193 4.193 20 C -0.013 4.013 21 O -0.377 6.377 22 C -0.174 4.174 23 C -0.019 4.019 24 O -0.301 6.301 25 C -0.017 4.017 26 C -0.193 4.193 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.225 0.775 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.071 0.929 48 H 0.114 0.886 49 H 0.070 0.930 50 H 0.111 0.889 51 H 0.096 0.904 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.897 -23.533 4.226 24.626 hybrid contribution 0.460 0.888 0.457 1.099 sum -5.437 -22.645 4.683 23.754 Atomic orbital electron populations 1.21628 0.81489 1.02630 1.00274 1.48157 1.06153 1.07883 1.71364 1.19274 0.92513 0.78165 0.97482 1.21439 1.36436 1.06223 0.92320 0.92477 1.24940 0.95357 0.96412 0.97446 1.69933 1.38489 1.14312 1.30739 0.86497 0.77673 0.78594 0.84665 1.20641 1.21076 1.19867 1.20317 0.88096 0.85181 0.77481 1.90674 1.13965 1.87356 1.50234 1.21641 0.99271 0.92755 1.03876 1.22042 0.94773 0.86601 1.02822 1.62201 1.27334 1.01546 1.34172 1.22896 0.98667 1.02897 0.90385 1.21003 0.90082 0.90413 0.95590 1.22372 0.98410 1.04269 0.94228 1.22740 0.85227 0.99250 0.94076 1.86498 1.30081 1.95482 1.25590 1.22171 1.01911 0.98641 0.94704 1.22696 0.95434 0.85454 0.98321 1.87922 1.82802 1.39599 1.19738 1.22624 0.98703 0.98261 0.82135 1.22618 1.00881 0.94588 1.01248 0.93921 0.90851 0.92319 0.95115 0.93915 0.92732 0.89951 0.88779 0.89883 0.92931 0.91090 0.90605 0.94798 0.90644 0.89482 0.92409 0.93826 0.77489 0.89900 0.90348 0.92918 0.88574 0.92973 0.88875 0.90363 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.24 59.85 0.61 1.94 16 2 N -0.60 -12.87 2.86 -182.96 -0.52 -13.40 16 3 C 0.24 6.49 5.16 -5.19 -0.03 6.47 16 4 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.50 10.41 7.67 -10.99 -0.08 10.33 16 13 O -0.54 -13.70 15.56 5.55 0.09 -13.62 16 14 C -0.13 -1.97 4.18 -27.89 -0.12 -2.08 16 15 C 0.07 0.90 2.73 -3.83 -0.01 0.89 16 16 N -0.53 -5.71 4.56 -226.95 -1.04 -6.74 16 17 C 0.00 -0.01 7.84 60.07 0.47 0.46 16 18 C 0.12 1.17 0.45 -131.41 -0.06 1.11 16 19 C -0.15 -1.70 3.54 -26.73 -0.09 -1.80 16 20 C 0.06 0.66 5.28 37.16 0.20 0.86 16 21 O -0.57 -6.63 13.66 -35.23 -0.48 -7.11 16 22 C -0.14 -1.36 5.14 -26.59 -0.14 -1.50 16 23 C 0.06 0.53 6.57 37.21 0.24 0.78 16 24 O -0.38 -3.90 10.76 -35.23 -0.38 -4.28 16 25 C 0.06 0.49 6.57 37.21 0.24 0.73 16 26 C -0.16 -1.25 3.23 -26.59 -0.09 -1.33 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 29 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 30 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.08 1.02 6.74 -51.93 -0.35 0.67 16 34 H 0.09 1.29 7.39 -51.93 -0.38 0.91 16 35 H 0.08 1.30 6.80 -51.93 -0.35 0.95 16 36 H 0.05 0.79 4.99 -51.93 -0.26 0.53 16 37 H 0.07 0.61 6.96 -51.93 -0.36 0.25 16 38 H 0.08 0.55 5.35 -51.93 -0.28 0.28 16 39 H 0.03 0.30 4.97 -51.93 -0.26 0.04 16 40 H 0.08 0.81 5.02 -51.93 -0.26 0.55 16 41 H 0.09 1.18 6.20 -51.93 -0.32 0.86 16 42 H 0.06 0.63 3.61 -51.93 -0.19 0.45 16 43 H 0.04 0.36 6.21 -51.93 -0.32 0.04 16 44 H 0.38 2.69 9.12 45.56 0.42 3.10 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.84 7.54 -51.93 -0.39 0.45 16 47 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 48 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.05 0.43 6.66 -51.93 -0.35 0.08 16 50 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.08 0.54 4.72 -51.93 -0.25 0.29 16 52 H 0.08 0.69 7.76 -51.93 -0.40 0.29 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -35.13 380.28 -7.59 -42.72 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.44 Total: 2.72 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 0.73 Total: 3.09 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.82 Total: -46.31 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.77 Total: -25.01 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.13 -7.59 -42.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355009677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.933 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds