Wall clock time and date at job start Tue Mar 31 2020 04:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47249 * 2 1 4 4 C 1.46504 * 119.99904 * 270.00218 * 3 2 1 5 5 C 1.50693 * 109.47138 * 269.99804 * 4 3 2 6 6 H 1.08002 * 120.00426 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99810 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99872 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00196 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47122 * 90.00038 * 9 7 5 11 11 H 1.48500 * 109.47261 * 210.00021 * 9 7 5 12 12 H 1.48500 * 109.47076 * 329.99845 * 9 7 5 13 13 C 1.34779 * 119.99977 * 90.00217 * 3 2 1 14 14 O 1.21281 * 119.99487 * 180.02562 * 13 3 2 15 15 C 1.50690 * 119.99813 * 0.02562 * 13 3 2 16 16 N 1.46909 * 109.46988 * 180.02562 * 15 13 3 17 17 C 1.46897 * 110.99697 * 287.77097 * 16 15 13 18 18 C 1.46896 * 110.99867 * 163.81440 * 16 15 13 19 19 C 1.52995 * 109.54605 * 297.53310 * 18 16 15 20 20 C 1.53001 * 109.47001 * 305.51347 * 19 18 16 21 21 O 1.42902 * 109.46997 * 174.87088 * 20 19 18 22 22 C 1.53181 * 109.54324 * 177.26412 * 18 16 15 23 23 C 1.53085 * 109.16411 * 183.15592 * 22 18 16 24 24 O 1.42903 * 109.41627 * 57.60828 * 23 22 18 25 25 C 1.42902 * 114.09724 * 298.83801 * 24 23 22 26 26 C 1.53090 * 109.41124 * 61.16057 * 25 24 23 27 27 H 1.09006 * 109.47220 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46765 * 300.00091 * 1 2 3 29 29 H 1.08995 * 109.47347 * 59.99805 * 1 2 3 30 30 H 1.09010 * 109.47309 * 240.00320 * 2 1 3 31 31 H 1.09000 * 109.47791 * 120.00150 * 2 1 3 32 32 H 1.09002 * 109.47057 * 29.99788 * 4 3 2 33 33 H 1.09001 * 109.47044 * 149.99847 * 4 3 2 34 34 H 0.97001 * 120.00251 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47476 * 299.99723 * 15 13 3 36 36 H 1.08998 * 109.47704 * 60.00042 * 15 13 3 37 37 H 1.08997 * 109.47076 * 60.00145 * 17 16 15 38 38 H 1.09004 * 109.46533 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.47136 * 299.99671 * 17 16 15 40 40 H 1.09000 * 109.47188 * 65.51295 * 19 18 16 41 41 H 1.09007 * 109.47251 * 185.51047 * 19 18 16 42 42 H 1.09004 * 109.47129 * 294.86707 * 20 19 18 43 43 H 1.08989 * 109.47278 * 54.86915 * 20 19 18 44 44 H 0.96703 * 114.00161 * 179.97438 * 21 20 19 45 45 H 1.08995 * 109.51879 * 303.05866 * 22 18 16 46 46 H 1.08996 * 109.52051 * 63.24674 * 22 18 16 47 47 H 1.09006 * 109.48006 * 297.62599 * 23 22 18 48 48 H 1.08999 * 109.49334 * 177.60138 * 23 22 18 49 49 H 1.08997 * 109.48442 * 301.17839 * 25 24 23 50 50 H 1.09003 * 109.48740 * 181.14860 * 25 24 23 51 51 H 1.08997 * 109.52475 * 182.48137 * 26 25 24 52 52 H 1.09003 * 109.57277 * 62.32537 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6856 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1492 2.3906 -2.8775 8 7 5.3914 2.1843 -3.2570 9 14 3.0128 3.4360 -3.9287 10 1 3.1154 4.8562 -3.5069 11 1 3.4064 3.3138 -5.3554 12 1 1.6133 2.9693 -3.7597 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9924 1.3060 2.4722 16 7 2.3100 2.2062 3.5889 17 6 3.7612 2.3944 3.7169 18 6 1.7303 1.7119 4.8448 19 6 0.2052 1.6799 4.7270 20 6 -0.3033 3.0621 4.3123 21 8 -1.7131 3.0028 4.0863 22 6 2.1379 2.6364 5.9962 23 6 1.5957 2.0705 7.3112 24 8 2.0945 0.7447 7.4993 25 6 1.7052 -0.1756 6.4777 26 6 2.2519 0.3000 5.1292 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.5816 1.6877 -2.0284 33 1 2.0955 3.1411 -1.1384 34 1 5.7175 2.5748 -4.0829 35 1 0.9446 1.0114 2.5302 36 1 2.6229 0.4187 2.5298 37 1 4.1541 2.8268 2.7967 38 1 3.9683 3.0654 4.5506 39 1 4.2379 1.4311 3.8982 40 1 -0.0859 0.9453 3.9762 41 1 -0.2279 1.4070 5.6894 42 1 -0.0923 3.7798 5.1051 43 1 0.1986 3.3742 3.3966 44 1 -2.1045 3.8460 3.8199 45 1 3.2250 2.6975 6.0467 46 1 1.7236 3.6306 5.8291 47 1 0.5064 2.0474 7.2752 48 1 1.9187 2.7014 8.1393 49 1 0.6175 -0.2281 6.4309 50 1 2.1073 -1.1629 6.7053 51 1 1.9192 -0.3766 4.3421 52 1 3.3414 0.3138 5.1612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355024054.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:25 Heat of formation + Delta-G solvation = -112.164654 kcal Electronic energy + Delta-G solvation = -31073.264683 eV Core-core repulsion = 27073.664740 eV Total energy + Delta-G solvation = -3999.599943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.92837 -39.08009 -37.31335 -36.52174 -35.30693 -32.94560 -32.59413 -31.49952 -30.40319 -30.05853 -28.61582 -26.96289 -25.57120 -23.94865 -23.22075 -22.96967 -22.74228 -21.70746 -18.62629 -18.14384 -17.39717 -17.25691 -16.93379 -16.46450 -16.02390 -15.84977 -15.62009 -15.02220 -14.82111 -14.75941 -14.51589 -14.23365 -13.89448 -13.63433 -13.46200 -13.33031 -13.20237 -12.67775 -12.51623 -12.49109 -12.24722 -12.20759 -11.92692 -11.73236 -11.67203 -11.44690 -11.34797 -11.23279 -11.01996 -10.94787 -10.82731 -10.62469 -10.51205 -10.37114 -10.14617 -9.89585 -9.76533 -9.54089 -8.99711 -8.59027 -8.13735 -7.68913 -6.09081 -4.07568 3.28733 3.34530 3.36716 3.38555 3.47526 3.63633 4.00687 4.12912 4.39443 4.41872 4.48946 4.72914 4.86302 4.90770 4.96628 4.99265 5.09380 5.18878 5.21215 5.25986 5.28674 5.31691 5.38363 5.42566 5.45783 5.52068 5.53679 5.58107 5.63082 5.71116 5.72724 5.75422 5.82263 5.97435 6.00623 6.02064 6.06715 6.14649 6.34002 6.39893 6.69965 6.91475 6.93513 7.02664 7.09794 7.38596 7.55944 7.61829 8.29408 8.47403 8.93249 9.05080 9.51731 11.04351 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.017174 B = 0.003425 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.997270 B = 8173.512065 C = 8541.413968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.523 6.523 15 C 0.031 3.969 16 N -0.507 5.507 17 C 0.017 3.983 18 C 0.115 3.885 19 C -0.110 4.110 20 C 0.077 3.923 21 O -0.582 6.582 22 C -0.149 4.149 23 C 0.060 3.940 24 O -0.383 6.383 25 C 0.065 3.935 26 C -0.186 4.186 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.028 0.972 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.069 0.931 44 H 0.379 0.621 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.053 0.947 48 H 0.095 0.905 49 H 0.053 0.947 50 H 0.092 0.908 51 H 0.076 0.924 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.872 -3.987 19.241 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.098 3.902 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.296 3.704 14 O -0.399 6.399 15 C -0.100 4.100 16 N -0.230 5.230 17 C -0.131 4.131 18 C 0.025 3.975 19 C -0.147 4.147 20 C 0.000 4.000 21 O -0.388 6.388 22 C -0.186 4.186 23 C -0.017 4.017 24 O -0.301 6.301 25 C -0.013 4.013 26 C -0.225 4.225 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.225 0.775 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.072 0.928 48 H 0.113 0.887 49 H 0.071 0.929 50 H 0.110 0.890 51 H 0.095 0.905 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.502 -3.529 19.275 22.722 hybrid contribution -0.222 0.265 -1.031 1.087 sum -11.724 -3.264 18.244 21.930 Atomic orbital electron populations 1.22236 0.96727 1.01546 1.02322 1.21424 0.93417 0.84026 1.02892 1.47937 1.64605 1.13281 1.06992 1.19607 0.97162 0.93351 0.80099 1.21329 0.95378 1.32768 1.07090 0.90892 1.24854 0.94978 0.95812 0.97359 1.69899 1.15139 1.45072 1.23583 0.86851 0.81484 0.81613 0.79735 1.19927 1.21115 1.19087 1.20132 0.78551 0.87070 0.84627 1.90648 1.44616 1.17772 1.86843 1.22167 1.02516 0.94557 0.90751 1.61885 1.13259 1.46278 1.01550 1.22603 0.86458 0.99846 1.04174 1.21048 0.93772 0.92594 0.90056 1.21655 0.93184 0.97725 1.02154 1.22180 0.80464 0.96604 1.00760 1.86393 1.22634 1.37955 1.91811 1.22395 1.02743 0.99819 0.93668 1.22654 0.98007 0.83755 0.97287 1.87929 1.75485 1.19490 1.47224 1.22546 0.98897 0.92928 0.86909 1.22912 1.02667 0.98146 0.98754 0.92029 0.92952 0.92167 0.89767 0.91769 0.95404 0.94659 0.92595 0.88361 0.92178 0.89284 0.91152 0.95828 0.91014 0.90937 0.94038 0.91234 0.77484 0.90137 0.89750 0.92836 0.88726 0.92858 0.88959 0.90510 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.15 0.38 -1.77 16 2 C 0.11 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.01 2.46 -175.06 -0.43 -12.44 16 4 C 0.22 5.31 4.23 -5.19 -0.02 5.29 16 5 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 6 H 0.07 2.29 8.06 -52.49 -0.42 1.86 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 9 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 13 C 0.51 10.13 7.42 -10.99 -0.08 10.05 16 14 O -0.52 -12.51 14.41 5.56 0.08 -12.43 16 15 C 0.03 0.45 2.87 -4.98 -0.01 0.43 16 16 N -0.51 -6.88 3.12 -228.39 -0.71 -7.59 16 17 C 0.02 0.24 8.45 60.06 0.51 0.74 16 18 C 0.12 1.21 0.15 -131.42 -0.02 1.19 16 19 C -0.11 -1.13 3.65 -26.73 -0.10 -1.23 16 20 C 0.08 0.87 6.57 37.16 0.24 1.11 16 21 O -0.58 -6.53 13.66 -35.23 -0.48 -7.01 16 22 C -0.15 -1.42 4.41 -26.59 -0.12 -1.54 16 23 C 0.06 0.52 6.57 37.20 0.24 0.76 16 24 O -0.38 -3.96 10.77 -35.23 -0.38 -4.33 16 25 C 0.06 0.57 6.57 37.20 0.24 0.81 16 26 C -0.19 -1.79 4.22 -26.59 -0.11 -1.90 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.64 7.22 -51.93 -0.38 0.27 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.36 8.07 -51.92 -0.42 0.94 16 31 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 32 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 33 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.10 1.27 4.89 -51.93 -0.25 1.01 16 36 H 0.06 0.82 6.47 -51.93 -0.34 0.48 16 37 H 0.09 1.60 6.44 -51.93 -0.33 1.27 16 38 H 0.07 0.88 5.91 -51.93 -0.31 0.57 16 39 H 0.02 0.31 6.57 -51.93 -0.34 -0.03 16 40 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16 41 H 0.07 0.69 5.04 -51.93 -0.26 0.43 16 42 H 0.04 0.42 6.79 -51.93 -0.35 0.06 16 43 H 0.07 0.96 7.27 -51.94 -0.38 0.58 16 44 H 0.38 2.79 9.12 45.56 0.42 3.21 16 45 H 0.08 0.82 6.07 -51.93 -0.32 0.50 16 46 H 0.08 0.80 6.59 -51.93 -0.34 0.46 16 47 H 0.05 0.43 6.49 -51.93 -0.34 0.09 16 48 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.05 0.43 6.73 -51.93 -0.35 0.08 16 50 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.08 0.71 6.94 -51.93 -0.36 0.34 16 52 H 0.08 0.84 6.52 -51.93 -0.34 0.50 16 LS Contribution 382.19 15.07 5.76 5.76 Total: -1.00 -34.69 382.19 -7.03 -41.71 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.66 Total: 4.12 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 0.69 Total: 2.16 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.37 Total: -46.91 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.78 Total: -23.78 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.69 -7.03 -41.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355024054.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.451 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds