Wall clock time and date at job start Tue Mar 31 2020 04:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00301 * 2 1 4 4 H 1.48498 * 109.46923 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47361 * 119.99957 * 3 2 1 6 6 H 1.48501 * 109.47273 * 240.00157 * 3 2 1 7 7 C 1.37873 * 119.99488 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00354 * 14.35620 * 7 2 1 9 9 C 1.50705 * 119.99893 * 194.35249 * 7 2 1 10 10 O 1.42897 * 112.94135 * 65.60304 * 9 7 2 11 11 C 1.53942 * 113.74122 * 294.01006 * 9 7 2 12 12 N 1.47807 * 86.03802 * 222.08178 * 11 9 7 13 13 C 1.34777 * 134.46136 * 204.64478 * 12 11 9 14 14 O 1.21276 * 120.00495 * 179.86950 * 13 12 11 15 15 C 1.50703 * 119.99851 * 359.86744 * 13 12 11 16 16 N 1.46502 * 109.47263 * 179.97438 * 15 13 12 17 17 C 1.35012 * 126.03396 * 124.71873 * 16 15 13 18 18 C 1.35370 * 107.73131 * 179.87629 * 17 16 15 19 19 Br 1.89095 * 126.04746 * 180.16733 * 18 17 16 20 20 C 1.39921 * 107.90580 * 0.38482 * 18 17 16 21 21 N 1.30842 * 108.20883 * 359.76007 * 20 18 17 22 22 C 1.47585 * 91.05141 * 24.55036 * 12 11 9 23 23 H 0.97001 * 120.00716 * 174.86502 * 1 2 3 24 24 H 0.96694 * 114.00247 * 305.73944 * 10 9 7 25 25 H 1.08994 * 113.77337 * 336.34886 * 11 9 7 26 26 H 1.09004 * 113.76969 * 107.74853 * 11 9 7 27 27 H 1.08997 * 109.47185 * 300.00570 * 15 13 12 28 28 H 1.09003 * 109.47110 * 59.99880 * 15 13 12 29 29 H 1.08001 * 126.13888 * 359.97438 * 17 16 15 30 30 H 1.08000 * 125.88867 * 179.74104 * 20 18 17 31 31 H 1.08992 * 113.77064 * 221.15076 * 22 12 11 32 32 H 1.08997 * 113.76476 * 89.75273 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0044 -1.1941 0.0005 8 1 1.4897 -2.1149 -0.2310 9 6 3.4762 -1.2144 0.3241 10 8 3.7555 -0.8306 1.6719 11 6 4.3501 -0.4949 -0.7192 12 7 5.2849 -1.6298 -0.5681 13 6 6.6078 -1.7958 -0.7653 14 8 7.1225 -2.8728 -0.5507 15 6 7.4475 -0.6432 -1.2526 16 7 8.8408 -1.0759 -1.3854 17 6 9.5977 -0.9857 -2.4998 18 6 10.8203 -1.4892 -2.2097 19 35 12.2850 -1.6100 -3.3995 20 6 10.8070 -1.9090 -0.8750 21 7 9.6212 -1.6617 -0.3804 22 6 4.1890 -2.5071 -0.1127 23 1 -0.4851 -0.8366 -0.0752 24 1 3.3828 0.0258 1.9223 25 1 3.8927 -0.4308 -1.7064 26 1 4.7533 0.4569 -0.3732 27 1 7.0769 -0.3076 -2.2212 28 1 7.3887 0.1771 -0.5372 29 1 9.2845 -0.5826 -3.4516 30 1 11.6329 -2.3597 -0.3448 31 1 4.4638 -3.1589 0.7165 32 1 3.6842 -3.0354 -0.9215 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356558809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:23 Heat of formation + Delta-G solvation = 50.611805 kcal Electronic energy + Delta-G solvation = -19842.034219 eV Core-core repulsion = 16467.015983 eV Total energy + Delta-G solvation = -3375.018236 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 329.016 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.44652 -39.85177 -37.75886 -34.35813 -33.60165 -32.72709 -31.75050 -29.92448 -28.94619 -27.10676 -25.75773 -24.74368 -21.66290 -21.11023 -20.11886 -18.85164 -18.07728 -17.43053 -16.98984 -15.90810 -15.68630 -15.23318 -14.96851 -14.23368 -14.01059 -13.89372 -13.63180 -13.35465 -13.09346 -12.85268 -12.50292 -12.20294 -12.04380 -11.38386 -11.17955 -11.09609 -10.90319 -10.54260 -10.26735 -10.18361 -9.91130 -9.60059 -9.44916 -9.13713 -8.64528 -8.57678 -8.18051 -6.83026 -4.57352 1.40761 1.59578 2.36077 2.47420 2.76029 2.98423 3.04067 3.08272 3.29106 4.08143 4.28884 4.45245 4.52513 4.74111 4.80897 4.92501 5.07236 5.28996 5.34765 5.41866 5.76001 5.82782 6.03741 6.18522 6.19566 6.22357 6.55986 6.60355 7.42569 7.43761 7.98119 8.03650 8.32605 8.47255 8.59811 9.18795 10.53469 Molecular weight = 329.02amu Principal moments of inertia in cm(-1) A = 0.035369 B = 0.002647 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.455774 B =10575.448912 C =10891.139305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.040 2.960 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.619 4.619 8 H 0.071 0.929 9 C 0.202 3.798 10 O -0.565 6.565 11 C 0.052 3.948 12 N -0.631 5.631 13 C 0.517 3.483 14 O -0.529 6.529 15 C 0.117 3.883 16 N -0.348 5.348 17 C 0.094 3.906 18 C -0.242 4.242 19 Br -0.027 7.027 20 C 0.069 3.931 21 N -0.249 5.249 22 C 0.133 3.867 23 H 0.275 0.725 24 H 0.368 0.632 25 H 0.099 0.901 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.118 0.882 29 H 0.183 0.817 30 H 0.190 0.810 31 H 0.075 0.925 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.195 2.625 -8.166 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.173 4.173 3 Si 0.868 3.132 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.656 4.656 8 H 0.089 0.911 9 C 0.160 3.840 10 O -0.373 6.373 11 C -0.071 4.071 12 N -0.367 5.367 13 C 0.304 3.696 14 O -0.405 6.405 15 C -0.008 4.008 16 N -0.128 5.128 17 C -0.055 4.055 18 C -0.334 4.334 19 Br 0.055 6.945 20 C -0.120 4.120 21 N -0.069 5.069 22 C 0.012 3.988 23 H 0.086 0.914 24 H 0.217 0.783 25 H 0.117 0.883 26 H 0.085 0.915 27 H 0.144 0.856 28 H 0.135 0.865 29 H 0.200 0.800 30 H 0.207 0.793 31 H 0.093 0.907 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.375 3.020 -7.382 21.880 hybrid contribution -0.004 -1.001 -0.717 1.231 sum 20.370 2.020 -8.100 22.014 Atomic orbital electron populations 1.70797 1.06822 1.31583 1.42473 1.25850 0.96374 1.02413 0.92673 0.84136 0.75554 0.76308 0.77187 1.20261 1.20611 1.19930 1.22184 0.92447 0.96833 1.54176 0.91128 1.20374 0.93506 0.90313 0.79772 1.86391 1.79377 1.41677 1.29883 1.24831 0.88851 0.90247 1.03188 1.50144 1.04648 1.16822 1.65064 1.19900 0.81545 0.89187 0.79001 1.90753 1.71230 1.26966 1.51573 1.21572 0.76449 0.97270 1.05485 1.48118 1.10142 1.46435 1.08151 1.22395 0.90562 0.99810 0.92748 1.21700 0.95297 1.19614 0.96742 1.96583 1.39721 1.98212 1.59941 1.23890 0.96030 0.99594 0.92506 1.77684 1.02227 1.14756 1.12204 1.23256 0.82448 0.95163 0.97980 0.91437 0.78282 0.88306 0.91456 0.85571 0.86451 0.79970 0.79318 0.90665 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.12 13.69 55.43 0.76 -23.36 16 2 C 0.04 0.88 5.44 -17.82 -0.10 0.78 16 3 Si 1.04 20.59 24.55 -169.99 -4.17 16.41 16 4 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -4.98 5.81 56.52 0.33 -4.65 16 6 H -0.27 -4.74 6.48 56.52 0.37 -4.38 16 7 C -0.62 -15.18 9.04 -34.44 -0.31 -15.49 16 8 H 0.07 1.88 8.06 -52.49 -0.42 1.46 16 9 C 0.20 4.30 1.07 -90.85 -0.10 4.20 16 10 O -0.56 -12.43 13.47 -35.23 -0.47 -12.90 16 11 C 0.05 0.92 5.39 -2.84 -0.02 0.90 16 12 N -0.63 -11.61 3.61 -178.13 -0.64 -12.26 16 13 C 0.52 9.26 8.09 -10.98 -0.09 9.17 16 14 O -0.53 -11.54 16.43 5.56 0.09 -11.44 16 15 C 0.12 1.51 6.74 -5.19 -0.03 1.47 16 16 N -0.35 -4.86 3.40 -62.51 -0.21 -5.07 16 17 C 0.09 1.07 11.41 -17.18 -0.20 0.88 16 18 C -0.24 -2.86 6.53 -39.97 -0.26 -3.12 16 19 Br -0.03 -0.27 34.08 -68.01 -2.32 -2.59 16 20 C 0.07 0.90 12.01 -17.34 -0.21 0.69 16 21 N -0.25 -4.01 11.64 30.64 0.36 -3.65 16 22 C 0.13 2.66 8.23 -2.96 -0.02 2.64 16 23 H 0.28 7.52 8.73 -40.82 -0.36 7.17 16 24 H 0.37 7.42 6.06 45.56 0.28 7.70 16 25 H 0.10 1.67 7.97 -51.93 -0.41 1.26 16 26 H 0.07 1.07 6.87 -51.93 -0.36 0.71 16 27 H 0.13 1.13 8.07 -51.93 -0.42 0.71 16 28 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.19 1.91 8.06 -52.49 -0.42 1.48 16 31 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 LS Contribution 300.48 15.07 4.53 4.53 Total: -1.00 -31.61 300.48 -6.13 -37.74 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -2.71 Total: 10.49 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.33 Total: 2.11 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.26 Total: -44.34 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.38 Total: -24.35 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.17 Total: 16.41 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -2.32 Total: -2.59 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.61 -6.13 -37.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356558809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.349 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds