Wall clock time and date at job start Tue Mar 31 2020 04:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42894 * 113.99931 * 2 1 4 4 C 1.52998 * 109.47296 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47079 * 65.00098 * 4 3 2 6 6 C 1.42900 * 113.99863 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47257 * 180.02562 * 6 5 4 8 8 H 1.08996 * 110.87604 * 57.38614 * 7 6 5 9 9 C 1.55143 * 110.99168 * 293.54337 * 7 6 5 10 10 C 1.54314 * 103.02246 * 206.21599 * 9 7 6 11 11 N 1.47445 * 107.23167 * 22.28383 * 10 9 7 12 12 C 1.46907 * 110.99860 * 123.25759 * 11 10 9 13 13 C 1.52997 * 109.47078 * 69.87215 * 12 11 10 14 14 C 1.50696 * 109.47106 * 179.97438 * 13 12 11 15 15 O 1.21284 * 120.00064 * 0.02562 * 14 13 12 16 16 N 1.34783 * 120.00310 * 179.97438 * 14 13 12 17 17 C 1.46497 * 119.99658 * 0.02562 * 16 14 13 18 18 C 1.46493 * 120.00107 * 179.97438 * 16 14 13 19 19 C 1.50706 * 109.47128 * 90.00402 * 18 16 14 20 20 H 1.08000 * 119.99302 * 359.97438 * 19 18 16 21 21 C 1.37871 * 120.00436 * 179.72498 * 19 18 16 22 22 N 1.31515 * 119.99684 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00405 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47050 * 59.99579 * 23 21 19 25 25 H 1.48496 * 109.47289 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46492 * 299.99554 * 23 21 19 27 27 C 1.47843 * 108.56665 * 0.99331 * 11 10 9 28 28 H 1.09000 * 109.46704 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47000 * 300.00082 * 1 2 3 30 30 H 1.08999 * 109.46856 * 59.99908 * 1 2 3 31 31 H 1.08998 * 109.47274 * 60.00061 * 3 2 1 32 32 H 1.09003 * 109.47289 * 300.00422 * 3 2 1 33 33 H 1.09003 * 109.47065 * 305.00048 * 4 3 2 34 34 H 1.08994 * 109.47403 * 185.00394 * 4 3 2 35 35 H 1.09005 * 109.47165 * 59.99731 * 6 5 4 36 36 H 1.09001 * 109.47432 * 300.00017 * 6 5 4 37 37 H 1.09001 * 110.70481 * 87.82969 * 9 7 6 38 38 H 1.09004 * 110.70166 * 324.60151 * 9 7 6 39 39 H 1.08998 * 109.89204 * 262.87905 * 10 9 7 40 40 H 1.09008 * 109.88875 * 141.68717 * 10 9 7 41 41 H 1.08999 * 109.47148 * 309.87342 * 12 11 10 42 42 H 1.08991 * 109.46855 * 189.87506 * 12 11 10 43 43 H 1.08999 * 109.47026 * 60.00053 * 13 12 11 44 44 H 1.08997 * 109.47228 * 300.00228 * 13 12 11 45 45 H 1.09001 * 109.46952 * 269.99864 * 17 16 14 46 46 H 1.08998 * 109.47569 * 29.99343 * 17 16 14 47 47 H 1.08997 * 109.47185 * 150.00014 * 17 16 14 48 48 H 1.09001 * 109.47786 * 330.00675 * 18 16 14 49 49 H 1.08998 * 109.47558 * 210.00538 * 18 16 14 50 50 H 0.97004 * 120.00247 * 180.02562 * 22 21 19 51 51 H 1.08991 * 110.37832 * 94.73516 * 27 11 10 52 52 H 1.09004 * 110.36893 * 217.07371 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2220 6 6 5.3811 0.4193 -1.3246 7 6 5.7247 -0.2337 -2.6649 8 1 5.3401 0.3583 -3.4953 9 6 5.1918 -1.6895 -2.7266 10 6 6.1472 -2.3672 -3.7312 11 7 7.3888 -1.5724 -3.7575 12 6 8.5540 -2.4053 -3.4307 13 6 8.8212 -3.3813 -4.5782 14 6 10.0168 -4.2352 -4.2432 15 8 10.5977 -4.0789 -3.1900 16 7 10.4400 -5.1735 -5.1134 17 6 9.7380 -5.3627 -6.3852 18 6 11.6026 -6.0032 -4.7879 19 6 11.1476 -7.2429 -4.0618 20 1 10.0974 -7.3969 -3.8624 21 6 12.0713 -8.1828 -3.6566 22 7 13.3496 -7.9977 -3.9043 23 14 11.5073 -9.7198 -2.7572 24 1 10.5730 -10.4844 -3.6219 25 1 12.6850 -10.5643 -2.4336 26 1 10.8152 -9.3325 -1.5017 27 6 7.2520 -0.4537 -2.8006 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1765 0.0890 35 1 5.7351 -0.2133 -0.5105 36 1 5.8629 1.3951 -1.2623 37 1 4.1666 -1.7092 -3.0962 38 1 5.2593 -2.1663 -1.7487 39 1 5.6943 -2.3803 -4.7226 40 1 6.3651 -3.3849 -3.4071 41 1 8.3557 -2.9648 -2.5165 42 1 9.4263 -1.7684 -3.2848 43 1 9.0195 -2.8218 -5.4923 44 1 7.9487 -4.0182 -4.7240 45 1 8.9457 -6.1002 -6.2566 46 1 9.3039 -4.4154 -6.7051 47 1 10.4418 -5.7133 -7.1400 48 1 12.2848 -5.4394 -4.1517 49 1 12.1147 -6.2878 -5.7071 50 1 13.9996 -8.6591 -3.6196 51 1 7.6837 -0.7237 -1.8369 52 1 7.7310 0.4429 -3.1941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357001552.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:40 Heat of formation + Delta-G solvation = -125.378095 kcal Electronic energy + Delta-G solvation = -27904.753698 eV Core-core repulsion = 23904.580778 eV Total energy + Delta-G solvation = -4000.172920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.67162 -38.90666 -38.45530 -37.36230 -34.80133 -33.63052 -32.56251 -31.01531 -29.63091 -29.45132 -27.63296 -26.68812 -25.80032 -25.03179 -23.69371 -22.97056 -22.20289 -20.68852 -20.25458 -18.21928 -17.45132 -17.08905 -16.62284 -16.50816 -16.45866 -15.82455 -15.57809 -15.50089 -15.29867 -14.94192 -14.77326 -14.24874 -13.81652 -13.64713 -13.50672 -13.36994 -13.11326 -12.66731 -12.55043 -12.26505 -12.09868 -12.04081 -11.93986 -11.77794 -11.61566 -11.52144 -11.34857 -11.19362 -11.06647 -10.94655 -10.88190 -10.79975 -10.63239 -10.50531 -10.12687 -10.12019 -9.91825 -9.61365 -8.84744 -8.40464 -8.35169 -7.59231 -6.01391 -4.05926 3.18987 3.33607 3.34387 3.37622 3.39987 3.51161 3.77832 4.19330 4.44736 4.48280 4.55418 4.60658 4.67460 4.74226 4.86419 4.92428 4.99655 5.02310 5.07668 5.11204 5.23884 5.24593 5.25764 5.28342 5.30166 5.31702 5.34941 5.45981 5.50626 5.60131 5.66583 5.79080 5.85986 5.89706 5.97207 6.00183 6.12857 6.18136 6.21183 6.24922 6.69000 6.86411 6.94050 7.05521 7.10401 7.47464 7.59164 7.94980 8.27040 8.47145 8.93307 9.14886 9.58863 11.06606 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.001870 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.814045 B =14969.324364 C =15782.334929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.377 6.377 6 C 0.072 3.928 7 C -0.094 4.094 8 H 0.091 0.909 9 C -0.129 4.129 10 C 0.036 3.964 11 N -0.530 5.530 12 C 0.068 3.932 13 C -0.133 4.133 14 C 0.504 3.496 15 O -0.547 6.547 16 N -0.604 5.604 17 C 0.086 3.914 18 C 0.245 3.755 19 C -0.525 4.525 20 H 0.056 0.944 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.051 3.949 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.048 0.952 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.043 0.957 49 H 0.032 0.968 50 H 0.263 0.737 51 H 0.050 0.950 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.035 20.663 2.906 31.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.296 6.296 6 C -0.005 4.005 7 C -0.113 4.113 8 H 0.109 0.891 9 C -0.167 4.167 10 C -0.092 4.092 11 N -0.254 5.254 12 C -0.061 4.061 13 C -0.173 4.173 14 C 0.291 3.709 15 O -0.425 6.425 16 N -0.336 5.336 17 C -0.058 4.058 18 C 0.126 3.874 19 C -0.564 4.564 20 H 0.074 0.926 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.077 4.077 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.073 0.927 51 H 0.068 0.932 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.439 20.595 2.820 30.588 hybrid contribution -0.439 -1.032 1.433 1.820 sum -22.878 19.563 4.252 30.401 Atomic orbital electron populations 1.22754 0.81031 1.02969 0.99818 1.87981 1.19611 1.27215 1.95354 1.22557 0.92432 0.85581 1.00798 1.22499 0.93327 0.97533 0.88030 1.87944 1.22062 1.82017 1.37601 1.22446 0.81489 0.99241 0.97322 1.22253 0.95363 0.96900 0.96829 0.89059 1.22753 0.99887 0.94389 0.99699 1.22927 0.90002 0.96564 0.99675 1.63573 1.02998 1.09989 1.48869 1.21984 0.93039 0.94717 0.96314 1.21610 0.97635 0.97767 1.00333 1.20322 0.85365 0.80979 0.84275 1.90659 1.58000 1.69710 1.24138 1.48151 1.32250 1.35643 1.17535 1.21622 0.97395 1.00353 0.86465 1.19288 0.82484 0.89122 0.96549 1.21398 0.93692 1.04129 1.37200 0.92608 1.24938 0.94791 0.98479 0.95964 1.69924 1.00721 1.35843 1.46959 0.86559 0.78020 0.82548 0.80292 1.20264 1.21169 1.20215 1.22954 0.94480 0.95237 0.95016 0.89498 0.94213 0.94005 0.91903 0.92402 0.92441 0.91824 0.93139 0.93144 0.90401 0.91514 0.90412 0.92281 0.93695 0.90097 0.88870 0.89723 0.93330 0.92394 0.91488 0.93898 0.95048 0.92701 0.93196 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.63 10.67 -40.08 -0.43 -4.05 16 3 C 0.06 0.44 6.32 37.16 0.23 0.67 16 4 C 0.06 0.47 6.32 37.16 0.23 0.70 16 5 O -0.38 -3.77 10.16 -40.08 -0.41 -4.18 16 6 C 0.07 0.63 5.38 37.15 0.20 0.83 16 7 C -0.09 -0.90 3.32 -88.48 -0.29 -1.19 16 8 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 9 C -0.13 -1.34 6.27 -24.91 -0.16 -1.50 16 10 C 0.04 0.41 6.21 -2.84 -0.02 0.39 16 11 N -0.53 -6.51 5.16 -231.25 -1.19 -7.70 16 12 C 0.07 1.00 3.83 -3.82 -0.01 0.98 16 13 C -0.13 -2.04 4.28 -27.89 -0.12 -2.16 16 14 C 0.50 10.70 7.67 -10.98 -0.08 10.61 16 15 O -0.55 -13.99 15.56 5.55 0.09 -13.90 16 16 N -0.60 -13.15 2.86 -182.96 -0.52 -13.68 16 17 C 0.09 1.40 10.29 59.85 0.62 2.01 16 18 C 0.24 6.57 5.20 -5.19 -0.03 6.54 16 19 C -0.53 -15.26 9.39 -34.44 -0.32 -15.58 16 20 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 22 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 23 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.05 0.53 6.15 -2.30 -0.01 0.52 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.45 8.11 -51.93 -0.42 0.02 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.72 6.91 -51.92 -0.36 0.36 16 41 H 0.04 0.73 7.92 -51.93 -0.41 0.32 16 42 H 0.08 1.25 8.03 -51.93 -0.42 0.84 16 43 H 0.09 1.27 7.40 -51.93 -0.38 0.88 16 44 H 0.08 1.19 7.11 -51.93 -0.37 0.82 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 47 H 0.07 1.05 7.89 -51.93 -0.41 0.64 16 48 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 49 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 50 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 51 H 0.05 0.54 7.71 -51.93 -0.40 0.14 16 52 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 418.45 15.07 6.31 6.31 Total: -1.00 -35.14 418.45 -8.95 -44.09 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -9.76 Total: -3.60 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 1.25 Total: 5.78 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -0.98 Total: -47.67 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.75 Total: -22.14 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.14 -8.95 -44.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357001552.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.289 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds