Wall clock time and date at job start Tue Mar 31 2020 04:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47381 * 2 1 4 4 C 1.42895 * 113.99983 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46797 * 180.02562 * 4 3 2 6 6 O 1.42895 * 109.47351 * 65.00132 * 5 4 3 7 7 C 1.42903 * 114.00274 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.62712 * 330.70022 * 7 6 5 9 9 C 1.55142 * 110.70426 * 93.80576 * 7 6 5 10 10 C 1.55380 * 101.43737 * 154.11513 * 9 7 6 11 11 N 1.47844 * 104.83918 * 322.95685 * 10 9 7 12 12 C 1.46900 * 110.99982 * 146.36889 * 11 10 9 13 13 C 1.53001 * 109.47271 * 69.15169 * 12 11 10 14 14 C 1.50702 * 109.47151 * 179.97438 * 13 12 11 15 15 O 1.21280 * 119.99744 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00167 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99643 * 359.97438 * 16 14 13 18 18 C 1.46498 * 120.00366 * 180.02562 * 16 14 13 19 19 C 1.50698 * 109.47264 * 89.99890 * 18 16 14 20 20 H 1.07995 * 119.99877 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99847 * 180.02562 * 19 18 16 22 22 N 1.31512 * 120.00201 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99706 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47490 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46647 * 120.00048 * 23 21 19 26 26 H 1.48500 * 109.47206 * 239.99526 * 23 21 19 27 27 C 1.47443 * 108.56494 * 24.09964 * 11 10 9 28 28 H 1.09004 * 109.47201 * 60.00284 * 1 2 3 29 29 H 1.09002 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46930 * 300.00333 * 1 2 3 31 31 H 1.09003 * 109.47279 * 239.99919 * 2 1 3 32 32 H 1.08998 * 109.47061 * 120.00387 * 2 1 3 33 33 H 1.09002 * 109.47229 * 60.00379 * 4 3 2 34 34 H 1.08993 * 109.47301 * 300.00194 * 4 3 2 35 35 H 1.09001 * 109.47286 * 305.00016 * 5 4 3 36 36 H 1.08998 * 109.47624 * 185.00275 * 5 4 3 37 37 H 1.09003 * 110.98867 * 272.30087 * 9 7 6 38 38 H 1.08996 * 110.99420 * 36.12147 * 9 7 6 39 39 H 1.08999 * 110.35214 * 204.10929 * 10 9 7 40 40 H 1.09007 * 110.44781 * 81.84802 * 10 9 7 41 41 H 1.08999 * 109.47273 * 189.15418 * 12 11 10 42 42 H 1.09006 * 109.47200 * 309.15339 * 12 11 10 43 43 H 1.08999 * 109.47175 * 300.00309 * 13 12 11 44 44 H 1.09008 * 109.46702 * 60.00484 * 13 12 11 45 45 H 1.09000 * 109.46909 * 90.00290 * 17 16 14 46 46 H 1.09004 * 109.46649 * 209.99736 * 17 16 14 47 47 H 1.08988 * 109.47313 * 330.00075 * 17 16 14 48 48 H 1.09000 * 109.47107 * 210.00114 * 18 16 14 49 49 H 1.09006 * 109.46697 * 329.99714 * 18 16 14 50 50 H 0.97000 * 120.00335 * 180.02562 * 22 21 19 51 51 H 1.08997 * 109.88254 * 239.60085 * 27 11 10 52 52 H 1.09003 * 109.88840 * 118.42215 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 8 3.3977 3.5450 1.2222 7 6 3.7194 4.9335 1.3253 8 1 4.6235 5.1612 0.7606 9 6 2.5341 5.8087 0.8393 10 6 2.7788 7.1246 1.6285 11 7 3.2793 6.6866 2.9489 12 6 4.2537 7.6453 3.4870 13 6 3.5383 8.9460 3.8575 14 6 4.5379 9.9292 4.4101 15 8 5.7073 9.6201 4.4984 16 7 4.1323 11.1519 4.8062 17 6 2.7197 11.5254 4.6990 18 6 5.1040 12.1079 5.3428 19 6 5.6678 12.9364 4.2174 20 1 5.3353 12.7680 3.2038 21 6 6.6082 13.9094 4.4817 22 7 7.0128 14.1148 5.7161 23 14 7.3077 14.9359 3.0865 24 1 6.6926 14.5117 1.8032 25 1 7.0075 16.3700 3.3285 26 1 8.7785 14.7426 3.0188 27 6 3.8801 5.3481 2.8029 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8340 0.9764 -0.8892 34 1 3.8333 0.9767 0.8907 35 1 3.3499 3.4416 -0.8407 36 1 4.9082 3.0255 -0.0880 37 1 2.5893 5.9784 -0.2360 38 1 1.5793 5.3603 1.1138 39 1 1.8467 7.6784 1.7405 40 1 3.5255 7.7379 1.1240 41 1 4.7253 7.2243 4.3750 42 1 5.0148 7.8509 2.7343 43 1 3.0667 9.3670 2.9696 44 1 2.7773 8.7403 4.6104 45 1 2.2017 11.2557 5.6194 46 1 2.6393 12.6005 4.5386 47 1 2.2671 10.9979 3.8595 48 1 4.6114 12.7609 6.0633 49 1 5.9117 11.5668 5.8358 50 1 7.6742 14.7996 5.9021 51 1 3.3618 4.6370 3.4461 52 1 4.9376 5.3858 3.0646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357019666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:26 Heat of formation + Delta-G solvation = -125.089827 kcal Electronic energy + Delta-G solvation = -27898.418374 eV Core-core repulsion = 23898.257954 eV Total energy + Delta-G solvation = -4000.160420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.75919 -38.92441 -38.39811 -36.99032 -34.78829 -32.98738 -32.51927 -31.93850 -29.70471 -29.59757 -28.11147 -27.32791 -25.70239 -23.88315 -23.18079 -22.98933 -22.18893 -21.31365 -20.63654 -18.29795 -17.58006 -17.22996 -16.64610 -16.52075 -16.25132 -15.87219 -15.35147 -15.27464 -15.05592 -14.91856 -14.46460 -14.09264 -14.06717 -13.80623 -13.45582 -13.18914 -12.93320 -12.73498 -12.62374 -12.37354 -12.15799 -12.09688 -11.88403 -11.77372 -11.74846 -11.63279 -11.48754 -11.38013 -11.30336 -11.09229 -10.91240 -10.87587 -10.71823 -10.54916 -10.15112 -10.00820 -9.75463 -9.59415 -8.86049 -8.43088 -8.38953 -7.60364 -6.03428 -4.08113 3.21096 3.27178 3.29557 3.36631 3.40211 3.49886 3.75975 4.17324 4.41588 4.46431 4.51854 4.59086 4.63194 4.76018 4.77071 4.86477 4.92546 4.94638 5.02151 5.12946 5.19579 5.24682 5.24907 5.29709 5.34154 5.37123 5.42299 5.47315 5.51394 5.65000 5.66353 5.73231 5.79049 5.81798 5.89032 5.92402 5.98118 6.13045 6.15181 6.25748 6.78609 6.87648 6.95712 7.01616 7.09402 7.47022 7.57550 7.93336 8.25174 8.46166 8.91955 9.13490 9.57000 11.04639 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.001750 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.244300 B =15999.071543 C =16368.597221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.065 3.935 5 C 0.063 3.937 6 O -0.365 6.365 7 C 0.067 3.933 8 H 0.067 0.933 9 C -0.148 4.148 10 C 0.039 3.961 11 N -0.526 5.526 12 C 0.066 3.934 13 C -0.133 4.133 14 C 0.504 3.496 15 O -0.547 6.547 16 N -0.603 5.603 17 C 0.084 3.916 18 C 0.244 3.756 19 C -0.525 4.525 20 H 0.057 0.943 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.048 3.952 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.050 0.950 41 H 0.083 0.917 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.032 0.968 49 H 0.043 0.957 50 H 0.262 0.738 51 H 0.090 0.910 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.568 -25.451 -12.118 30.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.014 4.014 6 O -0.284 6.284 7 C 0.009 3.991 8 H 0.085 0.915 9 C -0.187 4.187 10 C -0.088 4.088 11 N -0.251 5.251 12 C -0.062 4.062 13 C -0.173 4.173 14 C 0.290 3.710 15 O -0.425 6.425 16 N -0.335 5.335 17 C -0.060 4.060 18 C 0.125 3.875 19 C -0.564 4.564 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.080 4.080 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.063 0.937 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.050 0.950 49 H 0.062 0.938 50 H 0.072 0.928 51 H 0.108 0.892 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.452 -25.440 -11.440 30.547 hybrid contribution 1.373 0.726 -1.555 2.198 sum -11.079 -24.714 -12.995 30.040 Atomic orbital electron populations 1.21736 0.93651 1.02172 1.03316 1.22461 0.95798 0.83866 0.99886 1.87980 1.20446 1.26188 1.95371 1.22503 0.82275 0.95588 1.00812 1.22549 0.98179 0.92539 0.88111 1.87985 1.80591 1.22284 1.37502 1.23391 0.96778 0.81544 0.97435 0.91477 1.23262 1.00041 0.95660 0.99701 1.23125 1.00815 0.96404 0.88473 1.63606 1.35635 1.01791 1.24043 1.22061 0.92295 0.91389 1.00425 1.21591 0.98876 0.94501 1.02375 1.20319 0.89070 0.82708 0.78855 1.90658 1.18744 1.77653 1.55480 1.48155 1.08902 1.14270 1.62208 1.21633 0.82447 1.01893 1.00034 1.19285 0.87383 0.86543 0.94317 1.21482 1.23370 1.17450 0.94123 0.92471 1.24944 0.96215 0.97264 0.95754 1.69943 1.31527 1.33382 1.18520 0.86446 0.78996 0.79745 0.82237 1.19861 1.20949 1.20887 1.22784 0.99224 0.91282 0.94708 0.91905 0.91167 0.91629 0.93634 0.93377 0.91950 0.92372 0.92451 0.91784 0.90936 0.89483 0.89748 0.93121 0.89876 0.93691 0.89725 0.88817 0.93705 0.90895 0.92402 0.95033 0.93849 0.92786 0.89195 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.38 6.66 37.16 0.25 0.63 16 3 O -0.38 -3.63 10.31 -40.09 -0.41 -4.04 16 4 C 0.06 0.48 6.32 37.16 0.23 0.71 16 5 C 0.06 0.51 6.17 37.16 0.23 0.74 16 6 O -0.37 -3.94 10.04 -40.09 -0.40 -4.35 16 7 C 0.07 0.69 3.40 -24.91 -0.08 0.60 16 8 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 9 C -0.15 -1.45 6.84 -24.33 -0.17 -1.62 16 10 C 0.04 0.43 5.80 -2.04 -0.01 0.41 16 11 N -0.53 -6.53 5.16 -230.93 -1.19 -7.72 16 12 C 0.07 0.97 3.85 -3.82 -0.01 0.95 16 13 C -0.13 -2.01 4.30 -27.88 -0.12 -2.13 16 14 C 0.50 10.60 7.67 -10.99 -0.08 10.52 16 15 O -0.55 -13.88 15.56 5.56 0.09 -13.79 16 16 N -0.60 -13.04 2.86 -182.95 -0.52 -13.56 16 17 C 0.08 1.35 10.24 59.85 0.61 1.97 16 18 C 0.24 6.51 5.16 -5.20 -0.03 6.48 16 19 C -0.53 -15.13 9.39 -34.44 -0.32 -15.45 16 20 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 23 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.05 0.55 6.64 -2.84 -0.02 0.53 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.57 7.62 -51.93 -0.40 0.17 16 41 H 0.08 1.29 7.99 -51.93 -0.41 0.87 16 42 H 0.04 0.71 7.81 -51.93 -0.41 0.31 16 43 H 0.08 1.15 6.75 -51.93 -0.35 0.80 16 44 H 0.09 1.28 8.11 -51.92 -0.42 0.86 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 47 H 0.06 0.76 6.44 -51.94 -0.33 0.43 16 48 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 49 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.09 1.06 8.06 -51.93 -0.42 0.64 16 52 H 0.06 0.71 7.55 -51.93 -0.39 0.32 16 LS Contribution 419.92 15.07 6.33 6.33 Total: -1.00 -34.65 419.92 -9.44 -44.10 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -9.80 Total: -3.33 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 0.76 Total: 5.47 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.98 Total: -47.41 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.73 Total: -22.18 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.65 -9.44 -44.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357019666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.992 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds