Wall clock time and date at job start Tue Mar 31 2020 04:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47381 * 2 1 4 4 C 1.42895 * 113.99983 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46797 * 180.02562 * 4 3 2 6 6 O 1.42895 * 109.47351 * 65.00132 * 5 4 3 7 7 C 1.42903 * 114.00274 * 179.97438 * 6 5 4 8 8 H 1.09002 * 110.62712 * 330.70022 * 7 6 5 9 9 C 1.55142 * 110.70426 * 93.80576 * 7 6 5 10 10 C 1.55380 * 101.43737 * 154.11513 * 9 7 6 11 11 N 1.47844 * 104.83918 * 322.95685 * 10 9 7 12 12 C 1.46900 * 110.99982 * 146.36889 * 11 10 9 13 13 C 1.53001 * 109.47271 * 69.15169 * 12 11 10 14 14 C 1.50702 * 109.47151 * 179.97438 * 13 12 11 15 15 O 1.21280 * 119.99744 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00167 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99643 * 359.97438 * 16 14 13 18 18 C 1.46498 * 120.00366 * 180.02562 * 16 14 13 19 19 C 1.50698 * 109.47264 * 89.99890 * 18 16 14 20 20 H 1.07995 * 119.99877 * 0.02562 * 19 18 16 21 21 C 1.37878 * 119.99847 * 180.02562 * 19 18 16 22 22 N 1.31512 * 120.00201 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99706 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47490 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46647 * 120.00048 * 23 21 19 26 26 H 1.48500 * 109.47206 * 239.99526 * 23 21 19 27 27 C 1.47443 * 108.56494 * 24.09964 * 11 10 9 28 28 H 1.09004 * 109.47201 * 60.00284 * 1 2 3 29 29 H 1.09002 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46930 * 300.00333 * 1 2 3 31 31 H 1.09003 * 109.47279 * 239.99919 * 2 1 3 32 32 H 1.08998 * 109.47061 * 120.00387 * 2 1 3 33 33 H 1.09002 * 109.47229 * 60.00379 * 4 3 2 34 34 H 1.08993 * 109.47301 * 300.00194 * 4 3 2 35 35 H 1.09001 * 109.47286 * 305.00016 * 5 4 3 36 36 H 1.08998 * 109.47624 * 185.00275 * 5 4 3 37 37 H 1.09003 * 110.98867 * 272.30087 * 9 7 6 38 38 H 1.08996 * 110.99420 * 36.12147 * 9 7 6 39 39 H 1.08999 * 110.35214 * 204.10929 * 10 9 7 40 40 H 1.09007 * 110.44781 * 81.84802 * 10 9 7 41 41 H 1.08999 * 109.47273 * 189.15418 * 12 11 10 42 42 H 1.09006 * 109.47200 * 309.15339 * 12 11 10 43 43 H 1.08999 * 109.47175 * 300.00309 * 13 12 11 44 44 H 1.09008 * 109.46702 * 60.00484 * 13 12 11 45 45 H 1.09000 * 109.46909 * 90.00290 * 17 16 14 46 46 H 1.09004 * 109.46649 * 209.99736 * 17 16 14 47 47 H 1.08988 * 109.47313 * 330.00075 * 17 16 14 48 48 H 1.09000 * 109.47107 * 210.00114 * 18 16 14 49 49 H 1.09006 * 109.46697 * 329.99714 * 18 16 14 50 50 H 0.97000 * 120.00335 * 180.02562 * 22 21 19 51 51 H 1.08997 * 109.88254 * 239.60085 * 27 11 10 52 52 H 1.09003 * 109.88840 * 118.42215 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 8 3.3977 3.5450 1.2222 7 6 3.7194 4.9335 1.3253 8 1 4.6235 5.1612 0.7606 9 6 2.5341 5.8087 0.8393 10 6 2.7788 7.1246 1.6285 11 7 3.2793 6.6866 2.9489 12 6 4.2537 7.6453 3.4870 13 6 3.5383 8.9460 3.8575 14 6 4.5379 9.9292 4.4101 15 8 5.7073 9.6201 4.4984 16 7 4.1323 11.1519 4.8062 17 6 2.7197 11.5254 4.6990 18 6 5.1040 12.1079 5.3428 19 6 5.6678 12.9364 4.2174 20 1 5.3353 12.7680 3.2038 21 6 6.6082 13.9094 4.4817 22 7 7.0128 14.1148 5.7161 23 14 7.3077 14.9359 3.0865 24 1 6.6926 14.5117 1.8032 25 1 7.0075 16.3700 3.3285 26 1 8.7785 14.7426 3.0188 27 6 3.8801 5.3481 2.8029 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8340 0.9764 -0.8892 34 1 3.8333 0.9767 0.8907 35 1 3.3499 3.4416 -0.8407 36 1 4.9082 3.0255 -0.0880 37 1 2.5893 5.9784 -0.2360 38 1 1.5793 5.3603 1.1138 39 1 1.8467 7.6784 1.7405 40 1 3.5255 7.7379 1.1240 41 1 4.7253 7.2243 4.3750 42 1 5.0148 7.8509 2.7343 43 1 3.0667 9.3670 2.9696 44 1 2.7773 8.7403 4.6104 45 1 2.2017 11.2557 5.6194 46 1 2.6393 12.6005 4.5386 47 1 2.2671 10.9979 3.8595 48 1 4.6114 12.7609 6.0633 49 1 5.9117 11.5668 5.8358 50 1 7.6742 14.7996 5.9021 51 1 3.3618 4.6370 3.4461 52 1 4.9376 5.3858 3.0646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357019666.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:25 Heat of formation + Delta-G solvation = -149.587241 kcal Electronic energy + Delta-G solvation = -27899.480661 eV Core-core repulsion = 23898.257954 eV Total energy + Delta-G solvation = -4001.222708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.89178 -40.23514 -39.10385 -37.81035 -36.58926 -34.77448 -33.86107 -32.58316 -30.83026 -30.33597 -29.56011 -28.53103 -27.25880 -25.49791 -23.83364 -23.66407 -23.48964 -22.15607 -21.65144 -19.90149 -18.70728 -18.30606 -17.97935 -17.80216 -17.11922 -16.93865 -16.81726 -16.63494 -16.19624 -15.78454 -15.77065 -15.30455 -15.14596 -14.61475 -14.41831 -14.23412 -14.10911 -13.94599 -13.72807 -13.46347 -13.41002 -13.33790 -13.21031 -13.12505 -12.80149 -12.69469 -12.56702 -12.48326 -12.28430 -12.22849 -12.21738 -12.18386 -11.92751 -11.89289 -11.67544 -11.63306 -10.65887 -10.60448 -10.56460 -10.48280 -9.41869 -9.37491 -8.23126 -6.38373 1.35637 1.37855 1.49830 1.84976 2.26048 2.39707 2.59467 2.75192 3.01894 3.06337 3.57635 3.68636 3.87922 3.93684 4.04575 4.08680 4.13221 4.16309 4.22547 4.31912 4.33837 4.37008 4.42545 4.49129 4.52241 4.57244 4.60673 4.66625 4.71400 4.74183 4.86304 4.89848 4.90904 4.94465 4.96243 4.99483 5.03155 5.04422 5.05567 5.15885 5.23534 5.27706 5.56172 5.84317 5.92049 5.96888 6.05640 6.20796 6.33262 6.69292 6.79938 7.27545 7.48888 8.84116 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.001750 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.244300 B =15999.071543 C =16368.597221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.409 6.409 4 C 0.062 3.938 5 C 0.057 3.943 6 O -0.385 6.385 7 C 0.070 3.930 8 H 0.076 0.924 9 C -0.140 4.140 10 C 0.036 3.964 11 N -0.525 5.525 12 C 0.075 3.925 13 C -0.113 4.113 14 C 0.494 3.506 15 O -0.602 6.602 16 N -0.611 5.611 17 C 0.078 3.922 18 C 0.257 3.743 19 C -0.543 4.543 20 H 0.054 0.946 21 C 0.006 3.994 22 N -0.929 5.929 23 Si 0.970 3.030 24 H -0.266 1.266 25 H -0.268 1.268 26 H -0.282 1.282 27 C 0.045 3.955 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.028 0.972 43 H 0.110 0.890 44 H 0.119 0.881 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.095 0.905 48 H 0.023 0.977 49 H -0.003 1.003 50 H 0.267 0.733 51 H 0.084 0.916 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.079 -25.986 -14.341 32.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.329 6.329 4 C -0.014 4.014 5 C -0.019 4.019 6 O -0.304 6.304 7 C 0.011 3.989 8 H 0.094 0.906 9 C -0.178 4.178 10 C -0.091 4.091 11 N -0.250 5.250 12 C -0.053 4.053 13 C -0.153 4.153 14 C 0.283 3.717 15 O -0.484 6.484 16 N -0.342 5.342 17 C -0.064 4.064 18 C 0.136 3.864 19 C -0.582 4.582 20 H 0.072 0.928 21 C -0.193 4.193 22 N -0.569 5.569 23 Si 0.794 3.206 24 H -0.190 1.190 25 H -0.193 1.193 26 H -0.208 1.208 27 C -0.082 4.082 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.128 0.872 44 H 0.137 0.863 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.113 0.887 48 H 0.041 0.959 49 H 0.015 0.985 50 H 0.076 0.924 51 H 0.102 0.898 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.024 -25.988 -13.672 32.542 hybrid contribution 1.821 0.819 -0.825 2.161 sum -12.203 -25.169 -14.498 31.505 Atomic orbital electron populations 1.21762 0.93339 1.03231 1.02472 1.22633 0.96161 0.83004 1.00808 1.87939 1.21605 1.27818 1.95585 1.22636 0.81568 0.95342 1.01897 1.22762 0.99294 0.92800 0.87078 1.87959 1.80992 1.22429 1.39008 1.23343 0.97418 0.81705 0.96426 0.90584 1.23203 0.99354 0.94776 1.00500 1.23229 1.01154 0.97054 0.87648 1.63599 1.34602 1.01579 1.25259 1.21872 0.92330 0.91668 0.99474 1.21500 0.97398 0.92819 1.03605 1.21369 0.89461 0.83039 0.77786 1.90627 1.21522 1.78676 1.57573 1.48201 1.10409 1.13815 1.61800 1.21940 0.79353 1.02089 1.02972 1.18761 0.87369 0.86593 0.93708 1.21749 1.24046 1.18068 0.94323 0.92791 1.25891 0.96408 0.98511 0.98480 1.70062 1.32043 1.34094 1.20659 0.85339 0.77908 0.78430 0.78940 1.19050 1.19346 1.20765 1.22774 0.98871 0.90731 0.95870 0.92276 0.89192 0.92883 0.92054 0.93036 0.89524 0.92528 0.92251 0.90030 0.89313 0.90219 0.88431 0.93275 0.91460 0.95407 0.87160 0.86305 0.91153 0.91614 0.88654 0.95893 0.98508 0.92395 0.89757 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.05 0.61 6.66 71.98 0.48 1.09 16 3 O -0.41 -7.42 10.31 -144.33 -1.49 -8.90 16 4 C 0.06 0.83 6.32 71.98 0.45 1.28 16 5 C 0.06 0.83 6.17 71.98 0.44 1.27 16 6 O -0.39 -7.92 10.04 -144.33 -1.45 -9.37 16 7 C 0.07 1.34 3.40 31.77 0.11 1.45 16 8 H 0.08 1.30 7.85 -2.39 -0.02 1.29 16 9 C -0.14 -2.46 6.84 32.15 0.22 -2.24 16 10 C 0.04 0.70 5.80 86.94 0.50 1.21 16 11 N -0.53 -12.29 5.16 -884.54 -4.57 -16.85 16 12 C 0.08 2.15 3.85 86.30 0.33 2.48 16 13 C -0.11 -3.21 4.30 29.85 0.13 -3.08 16 14 C 0.49 20.83 7.67 87.66 0.67 21.51 16 15 O -0.60 -31.73 15.56 -3.03 -0.05 -31.78 16 16 N -0.61 -26.39 2.86 -851.13 -2.43 -28.82 16 17 C 0.08 2.35 10.24 127.77 1.31 3.66 16 18 C 0.26 14.21 5.16 85.63 0.44 14.65 16 19 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16 20 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 21 C 0.01 0.35 5.46 84.66 0.46 0.81 16 22 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 23 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 27 C 0.05 1.01 6.64 86.64 0.58 1.59 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.87 8.11 -2.39 -0.02 0.85 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.05 0.99 7.62 -2.38 -0.02 0.97 16 41 H 0.07 2.12 7.99 -2.39 -0.02 2.10 16 42 H 0.03 0.88 7.81 -2.38 -0.02 0.86 16 43 H 0.11 2.61 6.75 -2.39 -0.02 2.59 16 44 H 0.12 2.85 8.11 -2.38 -0.02 2.83 16 45 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.06 2.07 8.07 -2.38 -0.02 2.05 16 47 H 0.09 2.14 6.44 -2.39 -0.02 2.12 16 48 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 49 H 0.00 -0.21 7.42 -2.38 -0.02 -0.22 16 50 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 51 H 0.08 1.96 8.06 -2.39 -0.02 1.95 16 52 H 0.06 1.35 7.55 -2.39 -0.02 1.33 16 Total: -1.00 -77.97 419.92 0.30 -77.67 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.86 Total: 14.18 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 7.11 Total: 13.18 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -6.71 Total: -102.28 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -2.98 Total: -50.05 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -77.97 0.30 -77.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357019666.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.916 kcal (2) G-P(sol) polarization free energy of solvation -77.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds