Wall clock time and date at job start Tue Mar 31 2020 04:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.47009 * 2 1 4 4 C 1.42897 * 114.00118 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47361 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.46927 * 65.00478 * 5 4 3 7 7 C 1.42904 * 114.00450 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46442 * 330.00062 * 7 6 5 9 9 C 1.52991 * 109.47223 * 89.99725 * 7 6 5 10 10 C 1.50697 * 109.47395 * 210.00459 * 7 6 5 11 11 O 1.21290 * 119.99726 * 354.99171 * 10 7 6 12 12 N 1.34776 * 120.00226 * 175.00263 * 10 7 6 13 13 C 1.46500 * 120.00242 * 179.97438 * 12 10 7 14 14 C 1.52995 * 109.47246 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.49682 * 305.06335 * 14 13 12 16 16 C 1.53036 * 109.49840 * 184.99780 * 14 13 12 17 17 C 1.53039 * 109.52897 * 178.65874 * 16 14 13 18 18 C 1.53171 * 109.32745 * 61.37214 * 17 16 14 19 19 N 1.46930 * 108.76578 * 305.35409 * 18 17 16 20 20 C 1.36928 * 120.63317 * 233.63038 * 19 18 17 21 21 H 1.07997 * 120.00566 * 151.81367 * 20 19 18 22 22 C 1.38814 * 119.99954 * 331.81007 * 20 19 18 23 23 N 1.31627 * 119.99987 * 343.08825 * 22 20 19 24 24 Si 1.86799 * 119.99883 * 163.08217 * 22 20 19 25 25 H 1.48505 * 109.47105 * 90.00789 * 24 22 20 26 26 H 1.48505 * 109.47268 * 210.00080 * 24 22 20 27 27 H 1.48493 * 109.47507 * 330.00306 * 24 22 20 28 28 C 1.46929 * 118.73376 * 53.61081 * 19 18 17 29 29 H 1.08997 * 109.46703 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46952 * 299.99405 * 1 2 3 31 31 H 1.08997 * 109.46966 * 59.99601 * 1 2 3 32 32 H 1.09004 * 109.47379 * 240.00668 * 2 1 3 33 33 H 1.09002 * 109.47543 * 119.99981 * 2 1 3 34 34 H 1.09005 * 109.46702 * 60.00587 * 4 3 2 35 35 H 1.08998 * 109.47341 * 300.01007 * 4 3 2 36 36 H 1.08997 * 109.47445 * 305.00637 * 5 4 3 37 37 H 1.09004 * 109.47534 * 185.00253 * 5 4 3 38 38 H 1.09003 * 109.47458 * 180.02562 * 9 7 6 39 39 H 1.09004 * 109.47233 * 300.00812 * 9 7 6 40 40 H 1.09003 * 109.47216 * 60.00212 * 9 7 6 41 41 H 0.96995 * 119.99663 * 359.97438 * 12 10 7 42 42 H 1.09005 * 109.47038 * 59.99213 * 13 12 10 43 43 H 1.09004 * 109.46475 * 299.99552 * 13 12 10 44 44 H 1.09003 * 109.46291 * 298.66905 * 16 14 13 45 45 H 1.08995 * 109.46184 * 58.64651 * 16 14 13 46 46 H 1.08998 * 109.50211 * 181.31070 * 17 16 14 47 47 H 1.09003 * 109.49741 * 301.41247 * 17 16 14 48 48 H 1.09001 * 109.58962 * 185.57318 * 18 17 16 49 49 H 1.08993 * 109.70649 * 65.21448 * 18 17 16 50 50 H 0.96996 * 119.99377 * 179.97438 * 23 22 20 51 51 H 1.09005 * 109.58563 * 186.59883 * 28 19 18 52 52 H 1.09003 * 109.70189 * 66.24888 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9384 0.0012 6 8 3.3976 3.5451 1.2223 7 6 3.7183 4.9339 1.3250 8 1 4.6303 5.1385 0.7642 9 6 2.5696 5.7662 0.7519 10 6 3.9271 5.2955 2.7730 11 8 3.7242 4.4712 3.6392 12 7 4.3391 6.5350 3.1054 13 6 4.5416 6.8867 4.5130 14 6 5.0067 8.3408 4.6135 15 1 5.8948 8.4821 3.9975 16 6 5.3378 8.6716 6.0706 17 6 5.8350 10.1157 6.1670 18 6 4.7294 11.0651 5.6952 19 7 4.3038 10.6624 4.3478 20 6 4.2919 11.5674 3.3203 21 1 4.4307 11.2317 2.3033 22 6 4.1014 12.9165 3.5858 23 7 3.6079 13.2957 4.7457 24 14 4.5455 14.1938 2.2972 25 1 3.3678 14.4529 1.4305 26 1 4.9524 15.4542 2.9691 27 1 5.6694 13.6901 1.4676 28 6 3.8916 9.2700 4.1239 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.8339 0.9766 -0.8893 35 1 3.8333 0.9767 0.8907 36 1 3.3498 3.4418 -0.8406 37 1 4.9082 3.0256 -0.0880 38 1 2.8143 6.8256 0.8298 39 1 2.4186 5.5046 -0.2954 40 1 1.6576 5.5615 1.3127 41 1 4.5015 7.1941 2.4125 42 1 5.2986 6.2326 4.9457 43 1 3.6041 6.7664 5.0560 44 1 4.4432 8.5540 6.6821 45 1 6.1141 7.9957 6.4290 46 1 6.0927 10.3435 7.2013 47 1 6.7152 10.2404 5.5363 48 1 5.1111 12.0857 5.6681 49 1 3.8816 11.0101 6.3780 50 1 3.4752 14.2385 4.9313 51 1 3.7203 9.1062 3.0599 52 1 2.9753 9.0645 4.6773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359723020.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:44 Heat of formation + Delta-G solvation = -123.810850 kcal Electronic energy + Delta-G solvation = -28553.955494 eV Core-core repulsion = 24553.850534 eV Total energy + Delta-G solvation = -4000.104960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.98704 -38.63707 -37.91481 -37.22601 -34.78128 -33.14551 -32.49502 -31.43346 -30.45532 -30.10005 -29.04894 -25.83644 -25.29052 -23.97576 -23.07883 -22.73831 -22.09417 -20.97863 -20.30418 -19.05594 -17.47070 -17.40203 -17.09955 -16.60093 -16.15396 -15.75895 -15.20123 -14.99521 -14.88680 -14.78947 -14.22570 -13.99138 -13.81144 -13.52532 -13.42243 -12.98053 -12.89840 -12.78089 -12.58433 -12.46203 -12.33173 -12.18815 -12.12853 -11.81266 -11.68761 -11.50677 -11.30242 -11.14279 -11.03263 -10.71860 -10.51259 -10.25491 -10.19244 -10.08479 -9.94344 -9.89806 -9.68356 -9.43274 -9.39085 -8.90640 -8.48560 -6.68869 -5.81245 -3.24241 2.68733 2.84531 3.34527 3.35560 3.41948 3.43386 3.77554 4.45718 4.56881 4.70864 4.74332 4.78388 4.81404 4.90136 4.94998 5.03830 5.08231 5.11347 5.11419 5.29260 5.32275 5.43103 5.45223 5.46005 5.51864 5.57910 5.61506 5.62212 5.83024 5.83464 5.95368 5.99740 6.01756 6.23346 6.32443 6.36977 6.51118 6.58070 6.69142 6.75907 6.84065 6.85194 6.94956 6.96916 7.38596 7.60591 7.66090 7.76045 8.31486 8.42349 9.18503 9.82133 10.39293 11.27029 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.017423 B = 0.002160 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.720527 B =12961.164256 C =13916.368051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.066 3.934 5 C 0.061 3.939 6 O -0.348 6.348 7 C 0.071 3.929 8 H 0.084 0.916 9 C -0.170 4.170 10 C 0.512 3.488 11 O -0.526 6.526 12 N -0.722 5.722 13 C 0.129 3.871 14 C -0.117 4.117 15 H 0.073 0.927 16 C -0.100 4.100 17 C -0.141 4.141 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.254 4.254 21 H 0.064 0.936 22 C 0.002 3.998 23 N -0.901 5.901 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.154 3.846 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.402 0.598 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.049 0.951 47 H 0.054 0.946 48 H 0.086 0.914 49 H 0.018 0.982 50 H 0.254 0.746 51 H 0.050 0.950 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -21.704 -9.335 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.266 6.266 7 C 0.010 3.990 8 H 0.102 0.898 9 C -0.228 4.228 10 C 0.297 3.703 11 O -0.401 6.401 12 N -0.375 5.375 13 C 0.005 3.995 14 C -0.138 4.138 15 H 0.091 0.909 16 C -0.138 4.138 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.314 5.314 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.027 3.973 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.237 0.763 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.104 0.896 49 H 0.036 0.964 50 H 0.064 0.936 51 H 0.068 0.932 52 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 0.997 -22.065 -8.497 23.665 hybrid contribution 0.611 0.964 -1.168 1.633 sum 1.608 -21.101 -9.665 23.265 Atomic orbital electron populations 1.21735 0.93691 1.02121 1.03340 1.22458 0.95785 0.83890 0.99851 1.87982 1.20412 1.26169 1.95365 1.22480 0.82344 0.95415 1.00855 1.22632 0.98256 0.92797 0.87944 1.88124 1.80165 1.20841 1.37497 1.21901 0.99093 0.83895 0.94157 0.89814 1.22226 0.98921 0.99824 1.01827 1.20316 0.77223 0.82318 0.90445 1.90709 1.49657 1.49026 1.50723 1.46004 1.68794 1.12902 1.09809 1.21465 1.01152 0.96031 0.80847 1.21951 1.01022 0.92470 0.98342 0.90881 1.21341 1.00172 0.97329 0.94949 1.22165 1.00760 0.95544 0.99594 1.20790 0.92548 0.97413 0.84937 1.44029 1.75300 1.04750 1.07271 1.19127 1.43546 0.87564 0.88089 0.91807 1.25057 0.99329 0.98129 0.97139 1.70039 1.45953 1.15275 1.23238 0.86321 0.78329 0.81271 0.80964 1.21403 1.21572 1.20525 1.20896 0.92899 0.85625 0.97882 0.91205 0.91595 0.91918 0.93663 0.93356 0.91858 0.92250 0.92170 0.91664 0.90589 0.91286 0.90923 0.76265 0.91982 0.91525 0.92448 0.93438 0.93186 0.92760 0.89605 0.96422 0.93617 0.93188 0.96319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.46 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.21 10.31 -40.08 -0.41 -4.62 16 4 C 0.07 0.58 6.32 37.15 0.23 0.81 16 5 C 0.06 0.55 6.13 37.15 0.23 0.78 16 6 O -0.35 -4.61 9.49 -59.70 -0.57 -5.18 16 7 C 0.07 0.82 3.13 -27.89 -0.09 0.73 16 8 H 0.08 0.72 7.79 -51.93 -0.40 0.32 16 9 C -0.17 -1.75 9.48 37.15 0.35 -1.39 16 10 C 0.51 7.51 7.18 -10.99 -0.08 7.43 16 11 O -0.53 -9.98 16.51 -14.31 -0.24 -10.21 16 12 N -0.72 -9.60 5.29 -60.29 -0.32 -9.92 16 13 C 0.13 1.88 5.07 -4.04 -0.02 1.86 16 14 C -0.12 -1.89 2.37 -90.51 -0.21 -2.11 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 16 C -0.10 -1.63 5.17 -26.69 -0.14 -1.76 16 17 C -0.14 -2.63 6.08 -26.62 -0.16 -2.79 16 18 C 0.17 3.95 5.30 -3.72 -0.02 3.93 16 19 N -0.59 -14.29 2.99 -172.33 -0.52 -14.80 16 20 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 21 H 0.06 1.64 7.88 -52.49 -0.41 1.22 16 22 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 23 N -0.90 -25.80 11.20 55.49 0.62 -25.18 16 24 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 28 C 0.15 3.04 5.60 -3.71 -0.02 3.02 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 37 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 38 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 39 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.40 4.63 7.49 -40.82 -0.31 4.32 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.09 2.25 6.06 -51.93 -0.31 1.94 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 51 H 0.05 0.93 7.14 -51.93 -0.37 0.56 16 52 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 414.81 15.07 6.25 6.25 Total: -1.00 -33.48 414.81 -9.52 -42.99 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -9.78 Total: 0.88 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 0.47 Total: 3.61 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.21 Total: -49.90 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -1.22 Total: -20.01 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.48 -9.52 -42.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359723020.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.817 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds