Wall clock time and date at job start Tue Mar 31 2020 04:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42900 * 109.47476 * 2 1 4 4 C 1.42893 * 114.00390 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47086 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.46846 * 65.00790 * 5 4 3 7 7 C 1.42899 * 113.99846 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47110 * 29.99602 * 7 6 5 9 9 C 1.52991 * 109.47183 * 269.99710 * 7 6 5 10 10 C 1.50702 * 109.46882 * 149.99240 * 7 6 5 11 11 O 1.21275 * 120.00316 * 5.00565 * 10 7 6 12 12 N 1.34780 * 119.99954 * 184.99765 * 10 7 6 13 13 C 1.46494 * 120.00290 * 180.02562 * 12 10 7 14 14 C 1.52993 * 109.47389 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.49486 * 304.99878 * 14 13 12 16 16 C 1.53042 * 109.49783 * 184.93911 * 14 13 12 17 17 C 1.53041 * 109.53837 * 178.71829 * 16 14 13 18 18 C 1.53190 * 109.34136 * 61.31393 * 17 16 14 19 19 N 1.46934 * 108.77258 * 305.37926 * 18 17 16 20 20 C 1.36939 * 120.62965 * 233.63293 * 19 18 17 21 21 H 1.07994 * 119.99864 * 152.60362 * 20 19 18 22 22 C 1.38818 * 119.99960 * 332.60376 * 20 19 18 23 23 N 1.31612 * 119.99983 * 159.36184 * 22 20 19 24 24 Si 1.86804 * 120.00005 * 339.36139 * 22 20 19 25 25 H 1.48497 * 109.47066 * 92.89963 * 24 22 20 26 26 H 1.48501 * 109.47108 * 212.90163 * 24 22 20 27 27 H 1.48500 * 109.46837 * 332.90287 * 24 22 20 28 28 C 1.46923 * 118.73757 * 53.61371 * 19 18 17 29 29 H 1.09003 * 109.46897 * 60.00058 * 1 2 3 30 30 H 1.09003 * 109.47743 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47259 * 300.00113 * 1 2 3 32 32 H 1.09003 * 109.46897 * 119.99942 * 2 1 3 33 33 H 1.08999 * 109.47259 * 239.99887 * 2 1 3 34 34 H 1.08995 * 109.47411 * 300.00316 * 4 3 2 35 35 H 1.09003 * 109.47014 * 59.99884 * 4 3 2 36 36 H 1.09006 * 109.46592 * 185.00061 * 5 4 3 37 37 H 1.08996 * 109.47367 * 304.99954 * 5 4 3 38 38 H 1.09002 * 109.47481 * 59.99940 * 9 7 6 39 39 H 1.09002 * 109.47446 * 180.02562 * 9 7 6 40 40 H 1.09002 * 109.47010 * 299.99954 * 9 7 6 41 41 H 0.96998 * 119.99656 * 0.02562 * 12 10 7 42 42 H 1.09002 * 109.46862 * 300.00449 * 13 12 10 43 43 H 1.09002 * 109.47115 * 59.99706 * 13 12 10 44 44 H 1.09005 * 109.45637 * 298.69743 * 16 14 13 45 45 H 1.08994 * 109.46358 * 58.65790 * 16 14 13 46 46 H 1.09002 * 109.46904 * 301.35433 * 17 16 14 47 47 H 1.09006 * 109.49197 * 181.28144 * 17 16 14 48 48 H 1.09004 * 109.58282 * 185.59549 * 18 17 16 49 49 H 1.08992 * 109.70931 * 65.23655 * 18 17 16 50 50 H 0.97000 * 120.00228 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.58316 * 186.60465 * 28 19 18 52 52 H 1.09001 * 109.70299 * 66.24677 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 8 3.3976 3.5460 1.2205 7 6 3.7193 4.9346 1.3224 8 1 3.7321 5.3786 0.3269 9 6 5.0967 5.0929 1.9692 10 6 2.6839 5.6293 2.1688 11 8 1.8132 4.9840 2.7131 12 7 2.7256 6.9678 2.3212 13 6 1.7195 7.6431 3.1444 14 6 1.9924 9.1485 3.1508 15 1 3.0158 9.3313 3.4786 16 6 1.0184 9.8402 4.1074 17 6 1.3115 11.3419 4.1387 18 6 1.1115 11.9272 2.7372 19 7 1.9379 11.1709 1.7865 20 6 2.8201 11.8163 0.9617 21 1 3.7016 11.3033 0.6067 22 6 2.5813 13.1300 0.5819 23 7 3.5721 13.8803 0.1488 24 14 0.8536 13.8328 0.6854 25 1 0.6704 14.5050 1.9968 26 1 0.6535 14.8176 -0.4080 27 1 -0.1365 12.7344 0.5496 28 6 1.8001 9.7089 1.7381 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3635 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8333 0.9767 0.8907 35 1 3.8340 0.9764 -0.8892 36 1 4.9083 3.0253 -0.0893 37 1 3.3499 3.4409 -0.8424 38 1 5.8455 4.5904 1.3569 39 1 5.3419 6.1521 2.0473 40 1 5.0838 4.6490 2.9646 41 1 3.4219 7.4840 1.8857 42 1 0.7278 7.4557 2.7327 43 1 1.7678 7.2604 4.1639 44 1 -0.0037 9.6773 3.7654 45 1 1.1366 9.4256 5.1085 46 1 2.3411 11.5046 4.4575 47 1 0.6323 11.8306 4.8374 48 1 1.4141 12.9744 2.7320 49 1 0.0624 11.8487 2.4524 50 1 3.4052 14.7981 -0.1169 51 1 2.5572 9.2924 1.0736 52 1 0.8078 9.4452 1.3722 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359723096.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:46 Heat of formation + Delta-G solvation = -141.908390 kcal Electronic energy + Delta-G solvation = -28693.935259 eV Core-core repulsion = 24693.045532 eV Total energy + Delta-G solvation = -4000.889728 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10226 -39.74274 -39.22923 -38.20661 -36.30921 -34.76354 -33.43840 -32.78285 -32.36818 -31.55219 -29.79962 -27.53821 -26.99748 -25.07804 -23.68549 -23.67533 -23.47725 -22.82763 -21.47229 -20.71959 -18.79368 -18.31189 -18.26549 -17.75635 -17.24973 -17.00723 -16.76701 -16.42856 -16.04574 -15.77773 -15.59041 -15.44073 -15.11229 -14.85072 -14.80225 -14.33702 -14.20379 -13.97368 -13.82472 -13.70814 -13.57620 -13.32320 -13.25959 -13.16956 -13.06422 -12.64333 -12.55264 -12.28275 -12.18120 -12.15484 -12.08854 -11.85684 -11.68986 -11.58821 -11.33057 -11.25200 -11.00023 -10.65656 -10.54538 -10.46273 -10.09085 -8.91589 -8.15496 -5.46129 1.29685 1.41492 1.49659 1.58360 1.87921 2.42258 2.76737 2.90345 3.06522 3.32321 3.67498 3.86209 3.92033 3.95905 4.02900 4.03168 4.12433 4.15553 4.24324 4.25856 4.32328 4.39501 4.46190 4.48870 4.51034 4.54451 4.64697 4.65742 4.77950 4.79150 4.80271 4.84021 4.85382 4.88228 4.99882 5.01580 5.08977 5.15242 5.20676 5.24513 5.26385 5.29740 5.43725 5.58347 5.88082 6.06961 6.14137 6.32826 6.54704 6.92954 7.21828 7.63959 8.05411 9.03967 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.002243 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.728082 B =12480.429320 C =12698.275318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.415 6.415 4 C 0.060 3.940 5 C 0.053 3.947 6 O -0.382 6.382 7 C 0.070 3.930 8 H 0.108 0.892 9 C -0.163 4.163 10 C 0.509 3.491 11 O -0.573 6.573 12 N -0.715 5.715 13 C 0.137 3.863 14 C -0.102 4.102 15 H 0.077 0.923 16 C -0.100 4.100 17 C -0.126 4.126 18 C 0.115 3.885 19 N -0.619 5.619 20 C -0.243 4.243 21 H 0.060 0.940 22 C -0.035 4.035 23 N -0.955 5.955 24 Si 0.942 3.058 25 H -0.276 1.276 26 H -0.314 1.314 27 H -0.266 1.266 28 C 0.151 3.849 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.413 0.587 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.046 0.954 49 H 0.028 0.972 50 H 0.260 0.740 51 H 0.061 0.939 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 -25.012 2.678 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.336 6.336 4 C -0.016 4.016 5 C -0.023 4.023 6 O -0.301 6.301 7 C 0.009 3.991 8 H 0.126 0.874 9 C -0.221 4.221 10 C 0.296 3.704 11 O -0.452 6.452 12 N -0.368 5.368 13 C 0.013 3.987 14 C -0.122 4.122 15 H 0.096 0.904 16 C -0.137 4.137 17 C -0.165 4.165 18 C -0.010 4.010 19 N -0.344 5.344 20 C -0.372 4.372 21 H 0.078 0.922 22 C -0.230 4.230 23 N -0.601 5.601 24 Si 0.772 3.228 25 H -0.203 1.203 26 H -0.243 1.243 27 H -0.191 1.191 28 C 0.027 3.973 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.249 0.751 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.076 0.924 47 H 0.099 0.901 48 H 0.065 0.935 49 H 0.046 0.954 50 H 0.069 0.931 51 H 0.079 0.921 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.018 -25.291 3.143 25.485 hybrid contribution -0.148 1.106 -0.674 1.304 sum -0.130 -24.184 2.469 24.310 Atomic orbital electron populations 1.21775 0.93752 1.03250 1.02187 1.22626 0.95934 0.82998 1.00942 1.87978 1.22058 1.27937 1.95593 1.22691 0.81355 0.95458 1.02094 1.22925 1.00244 0.92848 0.86303 1.88073 1.81475 1.21207 1.39321 1.22008 0.93596 0.83531 0.99980 0.87401 1.22219 0.93863 1.04188 1.01841 1.20972 0.85671 0.82386 0.81408 1.90687 1.38678 1.66172 1.49637 1.45954 1.32566 1.06487 1.51829 1.21281 0.91397 0.90832 0.95158 1.21725 1.01012 0.92298 0.97188 0.90418 1.21371 0.98700 0.94239 0.99440 1.21895 1.01856 0.96611 0.96121 1.21436 0.93534 0.95390 0.90625 1.44487 1.46285 1.02824 1.40764 1.18893 0.99926 0.95884 1.22515 0.92216 1.25850 1.00092 0.97532 0.99508 1.69946 1.32012 1.08041 1.50138 0.85989 0.83163 0.77602 0.76070 1.20297 1.24290 1.19056 1.21102 0.98829 0.82275 0.95140 0.92419 0.88824 0.93496 0.92993 0.91579 0.92432 0.88921 0.88367 0.92363 0.88990 0.89475 0.92413 0.75055 0.92328 0.91081 0.91746 0.89824 0.92450 0.90087 0.93533 0.95403 0.93082 0.92069 0.95715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 10.28 71.98 0.74 -1.66 16 2 C 0.05 0.83 6.66 71.98 0.48 1.31 16 3 O -0.42 -9.66 10.31 -144.34 -1.49 -11.14 16 4 C 0.06 0.98 6.32 71.98 0.45 1.43 16 5 C 0.05 0.89 6.13 71.98 0.44 1.33 16 6 O -0.38 -9.63 9.49 -125.59 -1.19 -10.83 16 7 C 0.07 1.47 3.13 29.85 0.09 1.56 16 8 H 0.11 1.77 7.79 -2.39 -0.02 1.75 16 9 C -0.16 -2.49 9.48 71.98 0.68 -1.80 16 10 C 0.51 14.30 7.18 87.66 0.63 14.92 16 11 O -0.57 -21.69 16.51 15.98 0.26 -21.43 16 12 N -0.71 -17.32 5.29 -463.08 -2.45 -19.77 16 13 C 0.14 3.54 5.07 86.38 0.44 3.97 16 14 C -0.10 -2.84 2.37 -10.72 -0.03 -2.87 16 15 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 16 C -0.10 -2.62 5.17 30.62 0.16 -2.46 16 17 C -0.13 -3.94 6.08 30.67 0.19 -3.76 16 18 C 0.11 4.71 4.21 86.36 0.36 5.08 16 19 N -0.62 -27.80 2.77 -699.09 -1.94 -29.74 16 20 C -0.24 -13.22 10.04 84.03 0.84 -12.37 16 21 H 0.06 3.48 8.05 -2.91 -0.02 3.46 16 22 C -0.04 -2.01 5.23 84.86 0.44 -1.57 16 23 N -0.95 -58.94 13.97 21.65 0.30 -58.64 16 24 Si 0.94 46.38 24.34 68.60 1.67 48.05 16 25 H -0.28 -12.88 6.62 99.48 0.66 -12.22 16 26 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 27 H -0.27 -12.67 6.64 99.48 0.66 -12.01 16 28 C 0.15 5.39 5.60 86.36 0.48 5.87 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 0.97 7.87 -2.38 -0.02 0.95 16 37 H 0.06 0.98 8.09 -2.39 -0.02 0.96 16 38 H 0.09 0.98 7.87 -2.39 -0.02 0.96 16 39 H 0.09 1.12 7.92 -2.39 -0.02 1.10 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.41 8.45 7.48 -92.71 -0.69 7.76 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.06 1.66 8.14 -2.38 -0.02 1.65 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 48 H 0.05 2.14 4.50 -2.38 -0.01 2.13 16 49 H 0.03 1.13 7.07 -2.39 -0.02 1.11 16 50 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 51 H 0.06 2.12 7.14 -2.39 -0.02 2.10 16 52 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -77.70 408.34 1.67 -76.03 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.09 Total: 18.47 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 6.41 Total: 8.99 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -4.08 Total: -108.14 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -2.42 Total: -43.39 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.67 Total: 48.05 kcal Total: -77.70 1.67 -76.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359723096.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.881 kcal (2) G-P(sol) polarization free energy of solvation -77.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds