Wall clock time and date at job start Tue Mar 31 2020 04:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47054 * 2 1 4 4 C 1.42901 * 114.00184 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47506 * 180.02562 * 4 3 2 6 6 O 1.42896 * 109.47055 * 64.99721 * 5 4 3 7 7 C 1.42898 * 114.00111 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.47028 * 30.00511 * 7 6 5 9 9 C 1.52995 * 109.47528 * 270.00361 * 7 6 5 10 10 C 1.50697 * 109.47075 * 150.00249 * 7 6 5 11 11 O 1.21277 * 120.00401 * 5.00236 * 10 7 6 12 12 N 1.34783 * 119.99992 * 185.00281 * 10 7 6 13 13 C 1.46499 * 119.99748 * 179.97438 * 12 10 7 14 14 C 1.53005 * 109.46878 * 180.02562 * 13 12 10 15 15 C 1.53042 * 109.45972 * 295.03243 * 14 13 12 16 16 C 1.53193 * 109.31301 * 178.60334 * 15 14 13 17 17 N 1.46924 * 108.76767 * 54.64805 * 16 15 14 18 18 C 1.36939 * 120.63095 * 126.36405 * 17 16 15 19 19 H 1.08001 * 119.99551 * 331.86482 * 18 17 16 20 20 C 1.38809 * 120.00457 * 151.86617 * 18 17 16 21 21 N 1.31627 * 119.99374 * 343.06411 * 20 18 17 22 22 Si 1.86796 * 120.00364 * 163.06231 * 20 18 17 23 23 H 1.48498 * 109.47051 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46752 * 120.00124 * 22 20 18 25 25 H 1.48498 * 109.47166 * 239.99952 * 22 20 18 26 26 C 1.46930 * 118.74300 * 306.39070 * 17 16 15 27 27 C 1.53034 * 109.46111 * 174.97511 * 14 13 12 28 28 H 1.08997 * 109.47512 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47035 * 300.00154 * 1 2 3 30 30 H 1.09005 * 109.47422 * 59.99635 * 1 2 3 31 31 H 1.09006 * 109.47015 * 240.00386 * 2 1 3 32 32 H 1.08992 * 109.47146 * 120.00318 * 2 1 3 33 33 H 1.08996 * 109.46913 * 59.99920 * 4 3 2 34 34 H 1.09001 * 109.46894 * 300.00713 * 4 3 2 35 35 H 1.08998 * 109.47325 * 185.00209 * 5 4 3 36 36 H 1.08998 * 109.47006 * 305.00098 * 5 4 3 37 37 H 1.08996 * 109.47161 * 299.99920 * 9 7 6 38 38 H 1.09007 * 109.47044 * 59.99614 * 9 7 6 39 39 H 1.08998 * 109.47449 * 179.97438 * 9 7 6 40 40 H 0.96995 * 119.99684 * 0.02562 * 12 10 7 41 41 H 1.09001 * 109.47563 * 299.99862 * 13 12 10 42 42 H 1.08994 * 109.47154 * 60.00351 * 13 12 10 43 43 H 1.09001 * 109.45640 * 55.00190 * 14 13 12 44 44 H 1.09005 * 109.49575 * 298.56459 * 15 14 13 45 45 H 1.08994 * 109.50281 * 58.65849 * 15 14 13 46 46 H 1.09008 * 109.59542 * 294.86751 * 16 15 14 47 47 H 1.08992 * 109.70524 * 174.50389 * 16 15 14 48 48 H 0.97007 * 119.99515 * 180.02562 * 21 20 18 49 49 H 1.09002 * 109.58180 * 293.81756 * 26 17 16 50 50 H 1.08997 * 109.70543 * 173.46241 * 26 17 16 51 51 H 1.09002 * 109.49827 * 301.33567 * 27 14 13 52 52 H 1.08997 * 109.49764 * 61.40155 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8254 2.9384 0.0012 6 8 3.3976 3.5451 1.2222 7 6 3.7193 4.9336 1.3253 8 1 3.7321 5.3784 0.3302 9 6 5.0967 5.0914 1.9722 10 6 2.6840 5.6275 2.1724 11 8 1.8132 4.9818 2.7160 12 7 2.7257 6.9660 2.3258 13 6 1.7190 7.6406 3.1489 14 6 1.9920 9.1461 3.1566 15 6 3.3299 9.4180 3.8481 16 6 3.6166 10.9227 3.8231 17 7 2.4751 11.6313 4.4177 18 6 2.6619 12.5148 5.4471 19 1 3.4948 12.3884 6.1228 20 6 1.7806 13.5729 5.6222 21 7 0.9799 13.9316 4.6410 22 14 1.7311 14.4877 7.2501 23 1 2.7224 13.8933 8.1823 24 1 2.0591 15.9183 7.0241 25 1 0.3718 14.3784 7.8381 26 6 1.1294 11.3735 3.8874 27 6 0.8708 9.8637 3.9115 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.8340 0.9765 -0.8891 34 1 3.8332 0.9767 0.8908 35 1 4.9082 3.0256 -0.0880 36 1 3.3499 3.4417 -0.8407 37 1 5.0839 4.6466 2.9672 38 1 5.8456 4.5894 1.3595 39 1 5.3423 6.1504 2.0504 40 1 3.4219 7.4825 1.8907 41 1 0.7275 7.4537 2.7362 42 1 1.7665 7.2571 4.1680 43 1 2.0321 9.5131 2.1310 44 1 3.2821 9.0737 4.8812 45 1 4.1249 8.8876 3.3240 46 1 3.7543 11.2515 2.7929 47 1 4.5180 11.1347 4.3979 48 1 0.3643 14.6713 4.7632 49 1 1.0643 11.7391 2.8626 50 1 0.3878 11.8811 4.5042 51 1 -0.0848 9.6507 3.4323 52 1 0.8460 9.5148 4.9438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359830297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:39 Heat of formation + Delta-G solvation = -122.764854 kcal Electronic energy + Delta-G solvation = -28363.404928 eV Core-core repulsion = 24363.345327 eV Total energy + Delta-G solvation = -4000.059602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.05764 -38.68056 -37.93954 -37.27226 -34.90942 -33.11323 -32.43860 -31.41963 -30.61738 -29.69875 -29.14863 -26.92479 -24.73973 -23.64101 -23.07967 -22.81331 -22.18622 -21.05742 -20.37189 -19.09052 -17.59168 -17.44167 -17.07320 -16.69987 -16.22354 -15.75297 -15.31923 -15.02466 -14.96851 -14.67076 -14.18002 -13.94350 -13.65653 -13.54170 -13.39908 -13.25091 -13.03955 -12.99638 -12.65726 -12.52218 -12.34481 -12.27485 -12.01380 -11.81473 -11.66263 -11.46590 -11.32802 -11.23519 -10.98342 -10.73237 -10.49495 -10.23966 -10.19566 -10.17391 -9.93397 -9.90672 -9.63436 -9.52482 -9.36123 -8.95483 -8.46734 -6.66388 -5.78680 -3.21049 2.64004 2.77295 3.33657 3.37416 3.45545 3.47647 3.68897 4.47017 4.50134 4.65597 4.66442 4.70863 4.76957 4.84410 4.87578 4.99906 5.02996 5.06681 5.13035 5.23210 5.24749 5.35813 5.39373 5.39918 5.43052 5.44309 5.61177 5.62437 5.80249 5.85885 5.88169 5.96358 6.05666 6.15756 6.32690 6.43349 6.48121 6.60813 6.69000 6.76831 6.77985 6.82185 6.92961 6.98268 7.37624 7.54258 7.66790 7.80349 8.26688 8.45818 9.22022 9.85586 10.42177 11.29832 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.028425 B = 0.001872 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.815621 B =14957.021739 C =15531.882230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.378 6.378 4 C 0.066 3.934 5 C 0.060 3.940 6 O -0.348 6.348 7 C 0.070 3.930 8 H 0.085 0.915 9 C -0.170 4.170 10 C 0.510 3.490 11 O -0.520 6.520 12 N -0.724 5.724 13 C 0.125 3.875 14 C -0.089 4.089 15 C -0.127 4.127 16 C 0.145 3.855 17 N -0.592 5.592 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.172 3.828 27 C -0.133 4.133 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.399 0.601 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.052 0.948 48 H 0.253 0.747 49 H 0.017 0.983 50 H 0.088 0.912 51 H 0.051 0.949 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 -24.239 -12.435 28.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.298 6.298 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.266 6.266 7 C 0.009 3.991 8 H 0.103 0.897 9 C -0.228 4.228 10 C 0.295 3.705 11 O -0.394 6.394 12 N -0.377 5.377 13 C 0.002 3.998 14 C -0.108 4.108 15 C -0.166 4.166 16 C 0.019 3.981 17 N -0.315 5.315 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.046 3.954 27 C -0.173 4.173 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.234 0.766 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.035 0.965 50 H 0.106 0.894 51 H 0.070 0.930 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.900 -24.518 -11.871 27.872 hybrid contribution 0.615 0.675 0.314 0.966 sum 6.515 -23.843 -11.558 27.286 Atomic orbital electron populations 1.21739 0.93646 1.02096 1.03470 1.22453 0.95870 0.83832 0.99756 1.88021 1.20234 1.26169 1.95330 1.22470 0.82558 0.95297 1.00779 1.22638 0.98320 0.92988 0.87695 1.88127 1.80559 1.20473 1.37408 1.21902 0.93831 0.84132 0.99270 0.89727 1.22241 0.94914 1.03143 1.02530 1.20312 0.85821 0.82387 0.82019 1.90730 1.36434 1.65027 1.47238 1.46026 1.32748 1.06614 1.52338 1.21585 0.90885 0.92498 0.94852 1.21310 0.97421 0.91840 1.00271 1.22075 0.95151 0.99273 1.00111 1.20889 0.91583 0.89605 0.96049 1.44054 1.00642 1.47678 1.39143 1.19223 1.12312 1.03255 1.03285 0.91722 1.25046 1.00574 0.96518 0.97583 1.70045 1.26180 1.28790 1.29749 0.86239 0.77532 0.79341 0.83762 1.20275 1.21759 1.21556 1.20762 0.88235 0.88873 0.97555 1.22179 0.95637 1.00130 0.99341 0.91199 0.91505 0.91908 0.93688 0.93404 0.91850 0.92355 0.91595 0.92246 0.90996 0.91364 0.90694 0.76638 0.91780 0.91579 0.91318 0.92144 0.93516 0.96645 0.92904 0.93704 0.96457 0.89406 0.93044 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.47 6.66 37.16 0.25 0.72 16 3 O -0.38 -4.26 10.31 -40.08 -0.41 -4.68 16 4 C 0.07 0.54 6.32 37.16 0.23 0.77 16 5 C 0.06 0.51 6.13 37.16 0.23 0.73 16 6 O -0.35 -4.31 9.49 -59.70 -0.57 -4.88 16 7 C 0.07 0.73 3.13 -27.89 -0.09 0.64 16 8 H 0.08 0.66 7.79 -51.93 -0.40 0.25 16 9 C -0.17 -1.35 9.48 37.15 0.35 -1.00 16 10 C 0.51 7.15 7.18 -10.98 -0.08 7.07 16 11 O -0.52 -9.83 16.51 -14.30 -0.24 -10.07 16 12 N -0.72 -8.88 5.23 -60.29 -0.32 -9.20 16 13 C 0.12 1.80 5.06 -4.04 -0.02 1.78 16 14 C -0.09 -1.40 2.19 -90.58 -0.20 -1.59 16 15 C -0.13 -2.04 5.25 -26.61 -0.14 -2.18 16 16 C 0.15 2.91 6.52 -3.71 -0.02 2.89 16 17 N -0.59 -14.56 2.99 -172.32 -0.52 -15.08 16 18 C -0.25 -6.84 9.58 -15.06 -0.14 -6.99 16 19 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 20 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 21 N -0.90 -26.10 11.19 55.49 0.62 -25.48 16 22 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 27 C -0.13 -2.47 5.36 -26.61 -0.14 -2.61 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 36 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.41 7.87 -51.93 -0.41 0.00 16 39 H 0.07 0.49 7.93 -51.93 -0.41 0.08 16 40 H 0.40 3.84 7.43 -40.82 -0.30 3.54 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.61 7.15 -51.93 -0.37 0.23 16 46 H 0.02 0.31 8.14 -51.92 -0.42 -0.11 16 47 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 51 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 52 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 414.57 15.07 6.25 6.25 Total: -1.00 -34.49 414.57 -9.47 -43.96 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -9.77 Total: -0.87 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 0.50 Total: 3.39 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.21 Total: -49.76 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -1.22 Total: -19.62 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.49 -9.47 -43.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359830297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.802 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds