Wall clock time and date at job start Tue Mar 31 2020 04:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46526 * 2 1 4 4 C 1.42901 * 113.99606 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47064 * 179.97438 * 4 3 2 6 6 O 1.42891 * 109.47304 * 65.00098 * 5 4 3 7 7 C 1.42906 * 114.00299 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46971 * 329.99536 * 7 6 5 9 9 C 1.53000 * 109.47225 * 89.99715 * 7 6 5 10 10 C 1.50698 * 109.47047 * 210.00082 * 7 6 5 11 11 O 1.21284 * 120.00473 * 354.99560 * 10 7 6 12 12 N 1.34774 * 120.00019 * 174.99992 * 10 7 6 13 13 C 1.46500 * 120.00275 * 179.97438 * 12 10 7 14 14 C 1.53000 * 109.47512 * 179.97438 * 13 12 10 15 15 C 1.53041 * 109.46160 * 295.03067 * 14 13 12 16 16 C 1.53193 * 109.31264 * 178.59695 * 15 14 13 17 17 N 1.46924 * 108.76542 * 54.65394 * 16 15 14 18 18 C 1.36932 * 120.63055 * 126.35905 * 17 16 15 19 19 H 1.08004 * 120.00277 * 331.86082 * 18 17 16 20 20 C 1.38821 * 120.00062 * 151.85921 * 18 17 16 21 21 N 1.31612 * 119.99885 * 343.07729 * 20 18 17 22 22 Si 1.86802 * 119.99888 * 163.07563 * 20 18 17 23 23 H 1.48497 * 109.47080 * 60.00318 * 22 20 18 24 24 H 1.48495 * 109.46752 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47072 * 299.99772 * 22 20 18 26 26 C 1.46924 * 118.73917 * 306.38807 * 17 16 15 27 27 C 1.53035 * 109.46226 * 174.97286 * 14 13 12 28 28 H 1.09000 * 109.47061 * 300.00014 * 1 2 3 29 29 H 1.08993 * 109.47400 * 60.00316 * 1 2 3 30 30 H 1.09006 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47368 * 239.99783 * 2 1 3 32 32 H 1.09001 * 109.46899 * 119.99297 * 2 1 3 33 33 H 1.09000 * 109.47014 * 60.00323 * 4 3 2 34 34 H 1.08997 * 109.47649 * 300.00124 * 4 3 2 35 35 H 1.09002 * 109.47206 * 305.00119 * 5 4 3 36 36 H 1.09004 * 109.47419 * 185.00290 * 5 4 3 37 37 H 1.09000 * 109.46966 * 60.00440 * 9 7 6 38 38 H 1.08991 * 109.47004 * 300.00254 * 9 7 6 39 39 H 1.08999 * 109.46953 * 180.02562 * 9 7 6 40 40 H 0.97001 * 119.99850 * 359.97438 * 12 10 7 41 41 H 1.09000 * 109.47227 * 300.00116 * 13 12 10 42 42 H 1.09002 * 109.47125 * 59.99898 * 13 12 10 43 43 H 1.09001 * 109.45305 * 55.00185 * 14 13 12 44 44 H 1.08999 * 109.49716 * 298.56574 * 15 14 13 45 45 H 1.09005 * 109.49709 * 58.66146 * 15 14 13 46 46 H 1.08999 * 109.59718 * 294.86835 * 16 15 14 47 47 H 1.08996 * 109.70179 * 174.50624 * 16 15 14 48 48 H 0.97001 * 120.00354 * 179.97438 * 21 20 18 49 49 H 1.09005 * 109.58325 * 293.81633 * 26 17 16 50 50 H 1.09006 * 109.70661 * 173.46852 * 26 17 16 51 51 H 1.09005 * 109.49766 * 301.34101 * 27 14 13 52 52 H 1.08995 * 109.49925 * 61.43600 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 8 3.3974 3.5463 1.2203 7 6 3.7180 4.9352 1.3217 8 1 4.6301 5.1394 0.7609 9 6 2.5693 5.7670 0.7476 10 6 3.9266 5.2982 2.7693 11 8 3.7237 4.4748 3.6364 12 7 4.3385 6.5380 3.1006 13 6 4.5408 6.8911 4.5079 14 6 5.0060 8.3453 4.6072 15 6 6.3818 8.4864 3.9518 16 6 6.8287 9.9500 4.0220 17 7 6.7792 10.3927 5.4221 18 6 7.8774 10.9561 6.0149 19 1 8.8687 10.6911 5.6777 20 6 7.7168 11.8679 7.0493 21 7 6.5494 12.4437 7.2435 22 14 9.1576 12.2775 8.1654 23 1 10.2653 12.8452 7.3556 24 1 8.7286 13.2701 9.1831 25 1 9.6239 11.0423 8.8452 26 6 5.5291 10.2188 6.1742 27 6 5.0966 8.7523 6.0796 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.8339 0.9766 -0.8892 34 1 3.8333 0.9768 0.8907 35 1 3.3497 3.4411 -0.8424 36 1 4.9081 3.0256 -0.0893 37 1 1.6573 5.5628 1.3085 38 1 2.4185 5.5044 -0.2994 39 1 2.8141 6.8264 0.8245 40 1 4.5011 7.1964 2.4071 41 1 3.6033 6.7713 5.0509 42 1 5.2978 6.2375 4.9414 43 1 4.2920 8.9905 4.0953 44 1 7.1017 7.8602 4.4789 45 1 6.3219 8.1741 2.9092 46 1 6.1601 10.5656 3.4203 47 1 7.8474 10.0415 3.6456 48 1 6.4369 13.0805 7.9665 49 1 4.7545 10.8564 5.7480 50 1 5.6884 10.4862 7.2189 51 1 4.1218 8.6292 6.5517 52 1 5.8287 8.1237 6.5864 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359830298.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:42 Heat of formation + Delta-G solvation = -123.155280 kcal Electronic energy + Delta-G solvation = -28264.960056 eV Core-core repulsion = 24264.883524 eV Total energy + Delta-G solvation = -4000.076532 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.07538 -38.69922 -37.95474 -37.28205 -34.92765 -33.12631 -32.45405 -31.44130 -30.63149 -29.70655 -29.13802 -26.93773 -24.75125 -23.64353 -23.12690 -22.79398 -22.20341 -21.07031 -20.37818 -19.11283 -17.53856 -17.48480 -17.15381 -16.68142 -16.21284 -15.81220 -15.27476 -15.04932 -14.91534 -14.76657 -14.12711 -13.98653 -13.77090 -13.58047 -13.48777 -13.18063 -13.05180 -12.88087 -12.60968 -12.58014 -12.35783 -12.31670 -11.97506 -11.79789 -11.74285 -11.56513 -11.33733 -11.22096 -10.98340 -10.71649 -10.51200 -10.25882 -10.22446 -10.16332 -9.95248 -9.93308 -9.64375 -9.53907 -9.37939 -8.97879 -8.46388 -6.66878 -5.78884 -3.21373 2.61069 2.75868 3.30390 3.38468 3.44444 3.45772 3.68958 4.48118 4.49891 4.64087 4.66829 4.69639 4.74338 4.82351 4.88516 4.98933 5.01893 5.06497 5.12086 5.23237 5.23533 5.36533 5.38013 5.39691 5.41569 5.47101 5.57014 5.60457 5.78196 5.84419 5.86958 5.94692 6.04288 6.14465 6.31769 6.41824 6.46427 6.59935 6.68177 6.75983 6.76991 6.81260 6.89780 6.97385 7.36866 7.51987 7.66044 7.79276 8.23502 8.45463 9.21675 9.85208 10.41924 11.29590 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.036300 B = 0.001762 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.174368 B =15887.457757 C =15988.749984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.065 3.935 5 C 0.061 3.939 6 O -0.348 6.348 7 C 0.071 3.929 8 H 0.085 0.915 9 C -0.169 4.169 10 C 0.511 3.489 11 O -0.523 6.523 12 N -0.723 5.723 13 C 0.125 3.875 14 C -0.090 4.090 15 C -0.127 4.127 16 C 0.145 3.855 17 N -0.592 5.592 18 C -0.254 4.254 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.172 3.828 27 C -0.133 4.133 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.400 0.600 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.052 0.948 48 H 0.254 0.746 49 H 0.017 0.983 50 H 0.088 0.912 51 H 0.051 0.949 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.597 -19.861 -17.794 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.011 4.011 5 C -0.016 4.016 6 O -0.266 6.266 7 C 0.009 3.991 8 H 0.102 0.898 9 C -0.227 4.227 10 C 0.295 3.705 11 O -0.398 6.398 12 N -0.376 5.376 13 C 0.002 3.998 14 C -0.109 4.109 15 C -0.166 4.166 16 C 0.019 3.981 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.046 3.954 27 C -0.173 4.173 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.234 0.766 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.035 0.965 50 H 0.106 0.894 51 H 0.070 0.930 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.004 -20.273 -16.870 27.868 hybrid contribution 1.121 0.479 0.018 1.219 sum -7.883 -19.793 -16.852 27.164 Atomic orbital electron populations 1.21736 0.93697 1.02153 1.03281 1.22458 0.95766 0.83861 0.99910 1.87970 1.20425 1.26219 1.95381 1.22485 0.82328 0.95375 1.00947 1.22641 0.98320 0.92810 0.87832 1.88129 1.80118 1.20722 1.37619 1.21902 0.99014 0.83999 0.94186 0.89758 1.22214 0.98983 0.99575 1.01900 1.20330 0.77340 0.82358 0.90447 1.90722 1.49472 1.48965 1.50629 1.46028 1.68861 1.12904 1.09838 1.21591 1.00980 0.96747 0.80518 1.21311 0.97494 0.93145 0.98909 1.22079 0.96166 1.00200 0.98191 1.20886 0.98463 0.91204 0.87568 1.44029 1.11040 1.70348 1.06052 1.19141 0.86186 1.17985 1.15027 0.91822 1.25039 0.96808 0.96340 1.01397 1.70014 1.23278 1.29170 1.32275 0.86377 0.82083 0.77713 0.80631 1.20908 1.21634 1.21039 1.20761 0.86857 0.88779 0.99010 1.22181 1.00102 1.01674 0.93332 0.91630 0.91940 0.91177 0.93629 0.93319 0.91805 0.92186 0.92210 0.91593 0.90978 0.91251 0.90884 0.76581 0.91738 0.91600 0.91276 0.92166 0.93533 0.96627 0.92913 0.93583 0.96451 0.89415 0.93033 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.06 0.43 6.66 37.16 0.25 0.68 16 3 O -0.38 -3.97 10.31 -40.08 -0.41 -4.38 16 4 C 0.07 0.54 6.32 37.16 0.23 0.78 16 5 C 0.06 0.51 6.13 37.16 0.23 0.74 16 6 O -0.35 -4.32 9.49 -59.70 -0.57 -4.89 16 7 C 0.07 0.73 3.13 -27.88 -0.09 0.64 16 8 H 0.08 0.64 7.79 -51.93 -0.40 0.23 16 9 C -0.17 -1.42 9.48 37.16 0.35 -1.07 16 10 C 0.51 7.03 7.18 -10.99 -0.08 6.95 16 11 O -0.52 -9.68 16.51 -14.30 -0.24 -9.91 16 12 N -0.72 -8.74 5.23 -60.29 -0.32 -9.06 16 13 C 0.12 1.78 5.06 -4.04 -0.02 1.75 16 14 C -0.09 -1.39 2.19 -90.58 -0.20 -1.59 16 15 C -0.13 -2.03 5.25 -26.61 -0.14 -2.17 16 16 C 0.15 2.91 6.52 -3.71 -0.02 2.88 16 17 N -0.59 -14.51 2.99 -172.32 -0.52 -15.03 16 18 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 19 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 20 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 22 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 27 C -0.13 -2.45 5.36 -26.62 -0.14 -2.59 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 36 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 39 H 0.07 0.49 7.93 -51.93 -0.41 0.08 16 40 H 0.40 3.80 7.44 -40.82 -0.30 3.50 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.60 7.15 -51.93 -0.37 0.23 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 48 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 51 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 52 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 414.57 15.07 6.25 6.25 Total: -1.00 -33.98 414.57 -9.47 -43.45 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -9.77 Total: -0.92 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 0.50 Total: 3.30 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.21 Total: -49.47 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -1.22 Total: -19.18 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.98 -9.47 -43.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359830298.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.702 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds