Wall clock time and date at job start Tue Mar 31 2020 05:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65598 * 119.99885 * 2 1 4 4 O 1.42104 * 106.40184 * 311.45810 * 3 2 1 5 5 O 1.42099 * 106.40316 * 178.53678 * 3 2 1 6 6 C 1.76202 * 107.22008 * 64.99580 * 3 2 1 7 7 C 1.33842 * 122.44914 * 269.98046 * 6 3 2 8 8 S 1.70613 * 110.97272 * 179.74614 * 7 6 3 9 9 C 1.75838 * 91.56775 * 0.35063 * 8 7 6 10 10 C 1.46453 * 125.46579 * 179.91620 * 9 8 7 11 11 O 1.21743 * 120.00129 * 172.09619 * 10 9 8 12 12 N 1.34775 * 119.99759 * 352.09348 * 10 9 8 13 13 C 1.36884 * 120.00334 * 182.15065 * 12 10 9 14 14 H 1.08002 * 119.99065 * 329.96607 * 13 12 10 15 15 C 1.39000 * 120.00596 * 149.96534 * 13 12 10 16 16 N 1.31401 * 120.00074 * 332.59996 * 15 13 12 17 17 Si 1.86803 * 119.99993 * 152.59510 * 15 13 12 18 18 H 1.48488 * 109.47133 * 94.99952 * 17 15 13 19 19 H 1.48499 * 109.46836 * 215.00134 * 17 15 13 20 20 H 1.48498 * 109.46919 * 334.99813 * 17 15 13 21 21 C 1.46509 * 120.00187 * 2.14473 * 12 10 9 22 22 C 1.47205 * 109.46693 * 82.19261 * 21 12 10 23 23 N 7.27686 * 70.72590 * 61.46446 * 2 1 3 24 24 C 1.36770 * 109.07133 * 359.65259 * 9 8 7 25 25 H 1.08996 * 109.47112 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47176 * 299.99821 * 1 2 3 27 27 H 1.08996 * 109.46801 * 60.00165 * 1 2 3 28 28 H 0.96997 * 119.99955 * 179.97438 * 2 1 3 29 29 H 1.08003 * 124.51520 * 0.02562 * 7 6 3 30 30 H 0.96998 * 120.00012 * 179.97438 * 16 15 13 31 31 H 1.08991 * 109.47357 * 202.18972 * 21 12 10 32 32 H 1.08999 * 109.47050 * 322.20012 * 21 12 10 33 33 H 1.08000 * 123.36027 * 180.28221 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6738 1.1003 0.0348 6 6 1.9377 2.2416 1.5253 7 6 0.9067 3.0827 1.6694 8 16 0.8318 3.6896 3.2622 9 6 2.2565 2.7716 3.7306 10 6 2.8672 2.7708 5.0617 11 8 3.7652 1.9901 5.3190 12 7 2.4349 3.6344 6.0018 13 6 3.0350 3.6639 7.2318 14 1 3.4734 2.7654 7.6403 15 6 3.0801 4.8502 7.9549 16 7 3.0658 6.0039 7.3261 17 14 3.1608 4.8043 9.8206 18 1 4.5770 4.8981 10.2572 19 1 2.3943 5.9478 10.3775 20 1 2.5752 3.5305 10.3102 21 6 1.3229 4.5416 5.7074 22 6 0.0474 3.8303 5.8920 23 7 -0.9369 3.2813 6.0346 24 6 2.6995 2.0538 2.6539 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9500 -0.8400 0.0004 29 1 0.2118 3.3394 0.8835 30 1 3.0969 6.8317 7.8307 31 1 1.3630 5.3965 6.3823 32 1 1.3997 4.8881 4.6769 33 1 3.5615 1.4041 2.6873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361164488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:12 Heat of formation + Delta-G solvation = -22.925936 kcal Electronic energy + Delta-G solvation = -23354.189005 eV Core-core repulsion = 19635.206196 eV Total energy + Delta-G solvation = -3718.982808 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.034 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.21684 -37.61147 -37.23330 -36.19361 -35.86219 -35.14926 -34.85370 -32.30388 -29.84345 -27.94880 -26.21733 -25.93056 -24.46983 -21.87724 -19.51811 -18.95710 -18.46151 -18.01418 -17.70666 -16.77717 -16.68130 -16.33466 -15.74105 -15.12419 -14.75097 -14.66392 -14.13011 -13.94650 -13.90415 -13.53539 -13.09044 -12.95696 -12.92694 -12.61558 -12.40627 -12.26536 -12.13337 -12.03666 -11.76771 -11.70575 -11.60269 -11.41316 -11.10576 -10.82521 -10.58689 -10.40540 -9.80817 -9.48472 -9.02728 -8.84247 -8.63297 -8.13653 -6.81958 -4.30808 0.32275 0.59269 1.60421 1.92422 2.05567 2.89050 3.01221 3.06646 3.10562 3.14345 3.17486 3.70265 3.76775 3.89455 4.28202 4.33378 4.51435 4.80443 4.85893 4.90439 5.19823 5.22103 5.36751 5.48109 5.55566 5.57016 5.86037 6.04335 6.27423 6.37985 6.73141 7.22299 7.67187 7.86952 8.00485 8.68932 8.85233 9.42774 10.23807 Molecular weight = 329.03amu Principal moments of inertia in cm(-1) A = 0.023906 B = 0.003762 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.965467 B = 7440.927397 C = 7895.922372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.121 6.121 3 S 2.714 3.286 4 O -0.960 6.960 5 O -0.955 6.955 6 C -0.686 4.686 7 C -0.175 4.175 8 S 0.255 5.745 9 C -0.231 4.231 10 C 0.522 3.478 11 O -0.549 6.549 12 N -0.423 5.423 13 C -0.312 4.312 14 H 0.110 0.890 15 C 0.039 3.961 16 N -0.853 5.853 17 Si 0.922 3.078 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.265 1.265 21 C 0.176 3.824 22 C 0.194 3.806 23 N -0.433 5.433 24 C -0.021 4.021 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.419 0.581 29 H 0.176 0.824 30 H 0.279 0.721 31 H 0.169 0.831 32 H 0.101 0.899 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.240 -3.668 -10.778 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.880 5.880 3 S 2.801 3.199 4 O -0.950 6.950 5 O -0.946 6.946 6 C -0.787 4.787 7 C -0.316 4.316 8 S 0.524 5.476 9 C -0.352 4.352 10 C 0.311 3.689 11 O -0.431 6.431 12 N -0.142 5.142 13 C -0.439 4.439 14 H 0.127 0.873 15 C -0.168 4.168 16 N -0.489 5.489 17 Si 0.747 3.253 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.189 1.189 21 C 0.046 3.954 22 C -0.126 4.126 23 N -0.113 5.113 24 C -0.051 4.051 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.253 0.747 29 H 0.194 0.806 30 H 0.089 0.911 31 H 0.185 0.815 32 H 0.117 0.883 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.783 -3.208 -10.310 13.919 hybrid contribution 1.099 -0.766 0.602 1.469 sum -7.684 -3.975 -9.707 13.003 Atomic orbital electron populations 1.21482 0.78602 1.04193 1.02004 1.55322 1.16135 1.24512 1.92052 1.01350 0.72714 0.72463 0.73350 1.93564 1.78973 1.68591 1.53910 1.93598 1.30606 1.83241 1.87109 1.29523 1.08049 1.18423 1.22750 1.25807 1.00194 0.98923 1.06665 1.83825 1.24009 1.40339 0.99443 1.25315 1.01973 1.07262 1.00695 1.16949 0.84303 0.85900 0.81732 1.90718 1.31633 1.41300 1.79469 1.43297 1.25901 1.32396 1.12556 1.19654 1.36666 0.97071 0.90488 0.87254 1.25430 0.95598 0.94293 1.01433 1.69898 1.43777 0.98172 1.37087 0.85973 0.79022 0.78678 0.81655 1.19734 1.20218 1.18902 1.19500 0.77208 0.95341 1.03311 1.30196 0.95197 0.94411 0.92766 1.81041 1.12410 1.08334 1.09482 1.20124 0.98800 0.97737 0.88452 0.89954 0.92128 0.91385 0.74700 0.80649 0.91080 0.81489 0.88250 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 11.14 59.85 0.67 1.29 16 2 N -1.12 -10.37 6.19 -16.63 -0.10 -10.47 16 3 S 2.71 35.20 5.79 -107.50 -0.62 34.58 16 4 O -0.96 -14.07 17.34 -57.17 -0.99 -15.06 16 5 O -0.96 -15.23 17.64 -57.17 -1.01 -16.24 16 6 C -0.69 -10.01 5.84 -41.41 -0.24 -10.25 16 7 C -0.18 -2.34 10.40 29.19 0.30 -2.03 16 8 S 0.25 3.83 16.20 -107.50 -1.74 2.09 16 9 C -0.23 -4.43 6.23 -36.81 -0.23 -4.66 16 10 C 0.52 12.18 7.50 -12.95 -0.10 12.08 16 11 O -0.55 -14.53 16.62 5.15 0.09 -14.45 16 12 N -0.42 -9.71 2.55 -119.50 -0.31 -10.02 16 13 C -0.31 -7.71 9.03 -15.01 -0.14 -7.85 16 14 H 0.11 2.85 7.64 -52.49 -0.40 2.45 16 15 C 0.04 0.90 4.79 -17.45 -0.08 0.81 16 16 N -0.85 -19.56 11.44 55.50 0.64 -18.93 16 17 Si 0.92 18.27 29.63 -169.99 -5.04 13.23 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 21 C 0.18 3.36 5.05 -6.82 -0.03 3.33 16 22 C 0.19 3.61 13.07 -20.76 -0.27 3.34 16 23 N -0.43 -8.31 18.54 42.15 0.78 -7.53 16 24 C -0.02 -0.37 9.54 -40.40 -0.39 -0.76 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.42 3.04 8.96 -34.47 -0.31 2.74 16 29 H 0.18 1.80 7.98 -52.48 -0.42 1.38 16 30 H 0.28 5.93 8.31 -40.82 -0.34 5.60 16 31 H 0.17 3.29 5.31 -51.93 -0.28 3.02 16 32 H 0.10 1.68 4.49 -22.24 -0.10 1.58 16 33 H 0.16 2.85 7.98 -52.49 -0.42 2.43 16 LS Contribution 320.89 15.07 4.84 4.84 Total: -1.00 -31.97 320.89 -6.30 -38.27 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -2.32 Total: 4.38 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -0.51 Total: -4.69 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 1.01 Total: -46.95 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.91 Total: -45.74 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.04 Total: 13.23 kcal Atomic # 16 Polarization: 39.03 SS G_CDS: -2.36 Total: 36.66 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.97 -6.30 -38.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361164488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.345 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds