Wall clock time and date at job start Tue Mar 31 2020 04:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46898 * 2 1 4 4 C 1.46504 * 120.00038 * 270.00125 * 3 2 1 5 5 C 1.50699 * 109.47270 * 270.00052 * 4 3 2 6 6 H 1.07999 * 120.00127 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00022 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99978 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00186 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47136 * 89.99610 * 9 7 5 11 11 H 1.48499 * 109.47303 * 209.99838 * 9 7 5 12 12 H 1.48502 * 109.47053 * 329.99760 * 9 7 5 13 13 C 1.34773 * 120.00290 * 90.00381 * 3 2 1 14 14 O 1.21273 * 120.00448 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99749 * 0.27386 * 13 3 2 16 16 N 1.46894 * 109.47383 * 185.84267 * 15 13 3 17 17 C 1.47896 * 111.00308 * 176.64062 * 16 15 13 18 18 C 1.53996 * 107.06035 * 214.15572 * 17 16 15 19 19 C 1.54596 * 105.13832 * 1.22254 * 18 17 16 20 20 H 1.09002 * 110.72198 * 263.42359 * 19 18 17 21 21 C 1.52998 * 110.72390 * 140.31680 * 19 18 17 22 22 O 1.42898 * 109.46907 * 66.45547 * 21 19 18 23 23 C 1.42908 * 113.99778 * 180.02562 * 22 21 19 24 24 C 1.53001 * 109.46781 * 179.97438 * 23 22 21 25 25 O 1.42899 * 109.47247 * 64.99982 * 24 23 22 26 26 C 1.42900 * 113.99924 * 179.97438 * 25 24 23 27 27 C 1.48529 * 111.00325 * 59.24077 * 16 15 13 28 28 H 1.09000 * 109.46906 * 299.99363 * 1 2 3 29 29 H 1.08996 * 109.47256 * 60.00020 * 1 2 3 30 30 H 1.09006 * 109.46622 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46906 * 240.00637 * 2 1 3 32 32 H 1.08996 * 109.47656 * 120.00341 * 2 1 3 33 33 H 1.09004 * 109.46847 * 30.00096 * 4 3 2 34 34 H 1.09001 * 109.47352 * 149.99675 * 4 3 2 35 35 H 0.97003 * 119.99762 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.47215 * 305.84482 * 15 13 3 37 37 H 1.09001 * 109.47413 * 65.83494 * 15 13 3 38 38 H 1.08999 * 109.91907 * 333.50726 * 17 16 15 39 39 H 1.08999 * 109.91992 * 94.60512 * 17 16 15 40 40 H 1.09001 * 110.31161 * 120.14083 * 18 17 16 41 41 H 1.08999 * 110.30916 * 242.20837 * 18 17 16 42 42 H 1.09005 * 109.47031 * 186.45200 * 21 19 18 43 43 H 1.08998 * 109.47373 * 306.45264 * 21 19 18 44 44 H 1.09004 * 109.46897 * 299.99438 * 23 22 21 45 45 H 1.08994 * 109.47282 * 59.99837 * 23 22 21 46 46 H 1.08999 * 109.46728 * 185.00138 * 24 23 22 47 47 H 1.09001 * 109.47066 * 304.99604 * 24 23 22 48 48 H 1.08995 * 109.47230 * 180.02562 * 26 25 24 49 49 H 1.09007 * 109.47100 * 300.00100 * 26 25 24 50 50 H 1.09006 * 109.46707 * 59.99928 * 26 25 24 51 51 H 1.09003 * 110.66708 * 278.16051 * 27 16 15 52 52 H 1.09006 * 110.66352 * 41.28531 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7039 6 1 4.3426 1.2304 -1.0963 7 6 4.1489 2.3898 -2.8780 8 7 5.3908 2.1828 -3.2580 9 14 3.0125 3.4353 -3.9293 10 1 3.1159 4.8556 -3.5081 11 1 3.4054 3.3122 -5.3561 12 1 1.6128 2.9692 -3.7593 13 6 2.2430 2.0166 1.1671 14 8 2.6467 3.1601 1.1672 15 6 1.9978 1.3041 2.4722 16 7 2.1796 2.2450 3.5855 17 6 1.8687 1.6009 4.8801 18 6 1.2450 2.6807 5.7837 19 6 1.1951 3.9568 4.9124 20 1 2.0575 4.5932 5.1109 21 6 -0.1073 4.7237 5.1495 22 8 -0.1256 5.2297 6.4858 23 6 -1.3062 5.9657 6.8125 24 6 -1.2173 6.4562 8.2590 25 8 -0.1434 7.3911 8.3799 26 6 0.0265 7.9137 9.6990 27 6 1.2450 3.3935 3.4699 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5816 1.6877 -2.0284 34 1 2.0954 3.1411 -1.1385 35 1 5.7168 2.5733 -4.0839 36 1 0.9798 0.9148 2.4881 37 1 2.7035 0.4796 2.5743 38 1 1.1589 0.7876 4.7292 39 1 2.7828 1.2165 5.3326 40 1 0.2388 2.3879 6.0838 41 1 1.8685 2.8450 6.6625 42 1 -0.1736 5.5535 4.4458 43 1 -0.9550 4.0544 5.0028 44 1 -1.3977 6.8213 6.1433 45 1 -2.1784 5.3218 6.7005 46 1 -2.1536 6.9404 8.5366 47 1 -1.0371 5.6083 8.9198 48 1 0.8604 8.6156 9.7072 49 1 -0.8841 8.4283 10.0061 50 1 0.2324 7.0961 10.3899 51 1 1.6364 4.1400 2.7787 52 1 0.2578 3.0558 3.1544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362354176.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:14 Heat of formation + Delta-G solvation = -113.810990 kcal Electronic energy + Delta-G solvation = -28727.056105 eV Core-core repulsion = 24727.384772 eV Total energy + Delta-G solvation = -3999.671333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.82606 -38.84902 -38.19037 -37.16172 -35.32703 -33.06307 -32.54148 -30.65903 -30.30060 -29.32640 -28.25085 -26.70616 -26.28141 -24.58082 -22.97784 -22.88800 -22.17480 -20.91510 -20.25494 -18.32728 -17.22741 -17.16681 -16.88196 -16.63292 -16.13696 -15.79781 -15.67988 -15.44296 -15.29149 -14.88640 -14.66970 -14.08745 -13.86398 -13.51210 -13.49857 -13.11536 -13.09695 -12.78694 -12.55201 -12.46563 -12.38151 -12.00721 -11.92325 -11.84597 -11.70999 -11.42116 -11.40956 -11.26547 -10.97483 -10.95190 -10.84179 -10.68033 -10.53451 -10.47964 -10.12348 -10.04918 -9.79405 -9.49881 -8.91188 -8.55859 -8.26149 -7.67558 -6.05350 -4.03747 3.30475 3.31692 3.36512 3.38028 3.38498 3.42105 3.67253 4.20665 4.42033 4.62112 4.64977 4.68051 4.79778 4.81912 4.94333 4.98623 5.02269 5.06347 5.12177 5.17640 5.21984 5.25757 5.29170 5.32258 5.34437 5.37635 5.42216 5.46634 5.54236 5.61920 5.67522 5.69971 5.72247 5.87813 5.95360 6.03418 6.13483 6.26114 6.33939 6.37419 6.70465 6.77018 6.93506 6.95454 7.02642 7.07152 7.39729 7.64634 8.29254 8.50825 8.97624 9.05176 9.54988 11.08112 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.016179 B = 0.002280 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.184478 B =12277.680908 C =13022.968207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.508 3.492 14 O -0.523 6.523 15 C 0.030 3.970 16 N -0.496 5.496 17 C 0.033 3.967 18 C -0.117 4.117 19 C -0.090 4.090 20 H 0.093 0.907 21 C 0.072 3.928 22 O -0.377 6.377 23 C 0.063 3.937 24 C 0.064 3.936 25 O -0.382 6.382 26 C 0.031 3.969 27 C 0.044 3.956 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.046 0.954 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.086 0.914 49 H 0.039 0.961 50 H 0.041 0.959 51 H 0.107 0.893 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.536 1.318 22.711 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.328 5.328 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.093 0.907 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.294 3.706 14 O -0.398 6.398 15 C -0.101 4.101 16 N -0.220 5.220 17 C -0.095 4.095 18 C -0.155 4.155 19 C -0.109 4.109 20 H 0.112 0.888 21 C -0.005 4.005 22 O -0.296 6.296 23 C -0.014 4.014 24 C -0.013 4.013 25 O -0.301 6.301 26 C -0.066 4.066 27 C -0.083 4.083 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.105 0.895 49 H 0.057 0.943 50 H 0.060 0.940 51 H 0.125 0.875 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.366 2.152 22.485 27.894 hybrid contribution -1.692 0.018 -0.607 1.798 sum -18.059 2.170 21.878 28.451 Atomic orbital electron populations 1.22236 0.96934 1.01520 1.02064 1.21425 0.93237 0.84013 1.03106 1.47940 1.64500 1.13349 1.06985 1.19619 0.97270 0.93311 0.80051 1.21336 0.95359 1.32810 1.07019 0.90740 1.24865 0.94996 0.95843 0.97388 1.69902 1.15122 1.45027 1.23541 0.86852 0.81413 0.81653 0.79747 1.19923 1.21123 1.19165 1.20133 0.78597 0.87123 0.84730 1.90640 1.44450 1.17957 1.86791 1.22286 1.01045 0.96021 0.90783 1.64532 1.49951 1.07123 1.00403 1.22948 0.99861 0.96243 0.90417 1.22355 1.00739 0.94092 0.98299 1.22062 0.97423 0.96322 0.95081 0.88817 1.22498 0.97378 0.96964 0.83634 1.87951 1.39892 1.71590 1.30161 1.22492 0.88372 0.95309 0.95264 1.22557 0.90160 0.92265 0.96338 1.87989 1.52487 1.60438 1.29187 1.22751 1.01243 0.98293 0.84277 1.23315 0.94060 0.94808 0.96126 0.93255 0.92192 0.91989 0.89658 0.91520 0.95396 0.94683 0.92610 0.92603 0.88098 0.93994 0.90177 0.91705 0.90788 0.92877 0.93542 0.92417 0.91963 0.91980 0.92434 0.89513 0.94271 0.94023 0.87467 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.18 37.16 0.38 -1.72 16 2 C 0.11 1.64 5.85 -4.04 -0.02 1.61 16 3 N -0.60 -12.16 2.46 -175.06 -0.43 -12.59 16 4 C 0.22 5.34 4.23 -5.19 -0.02 5.32 16 5 C -0.53 -15.27 9.94 -34.44 -0.34 -15.62 16 6 H 0.07 2.38 8.06 -52.49 -0.42 1.95 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 9 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 13 C 0.51 10.40 7.31 -10.99 -0.08 10.32 16 14 O -0.52 -12.86 13.87 5.56 0.08 -12.78 16 15 C 0.03 0.46 3.77 -4.98 -0.02 0.44 16 16 N -0.50 -7.60 5.11 -231.90 -1.18 -8.78 16 17 C 0.03 0.39 6.70 -2.76 -0.02 0.37 16 18 C -0.12 -1.27 6.36 -25.37 -0.16 -1.43 16 19 C -0.09 -1.11 3.35 -88.76 -0.30 -1.41 16 20 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 21 C 0.07 0.78 5.26 37.16 0.20 0.98 16 22 O -0.38 -4.34 10.15 -40.08 -0.41 -4.75 16 23 C 0.06 0.54 6.32 37.16 0.23 0.77 16 24 C 0.06 0.50 6.32 37.16 0.23 0.73 16 25 O -0.38 -3.98 10.67 -40.08 -0.43 -4.40 16 26 C 0.03 0.21 11.01 101.05 1.11 1.32 16 27 C 0.04 0.65 5.03 -1.90 -0.01 0.64 16 28 H 0.05 0.58 7.14 -51.93 -0.37 0.21 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.07 0.87 6.60 -51.93 -0.34 0.52 16 33 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 34 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.06 0.72 6.73 -51.93 -0.35 0.37 16 37 H 0.10 1.44 7.70 -51.93 -0.40 1.04 16 38 H 0.04 0.43 7.68 -51.93 -0.40 0.03 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.63 7.80 -51.93 -0.41 0.23 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.04 0.20 8.14 -51.92 -0.42 -0.22 16 50 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 51 H 0.11 1.91 6.43 -51.93 -0.33 1.57 16 52 H 0.04 0.51 7.92 -51.93 -0.41 0.10 16 LS Contribution 411.87 15.07 6.21 6.21 Total: -1.00 -35.78 411.87 -8.64 -44.42 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -9.66 Total: -1.56 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 1.09 Total: 4.34 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: -0.84 Total: -48.58 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.76 Total: -21.94 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.78 -8.64 -44.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362354176.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.389 kcal (2) G-P(sol) polarization free energy of solvation -35.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds