Wall clock time and date at job start Tue Mar 31 2020 04:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.47261 * 2 1 4 4 C 1.46497 * 120.00078 * 89.99850 * 3 2 1 5 5 C 1.50694 * 109.47115 * 90.00278 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.34777 * 119.99744 * 269.99948 * 3 2 1 14 14 O 1.21279 * 119.99709 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99969 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47178 * 180.02562 * 15 13 3 17 17 C 1.47447 * 111.00057 * 69.87042 * 16 15 13 18 18 C 1.54319 * 107.23190 * 123.25864 * 17 16 15 19 19 C 1.55143 * 103.01869 * 22.28705 * 18 17 16 20 20 H 1.08999 * 110.99381 * 82.46896 * 19 18 17 21 21 C 1.52997 * 110.98947 * 206.25374 * 19 18 17 22 22 O 1.42904 * 109.47073 * 293.54525 * 21 19 18 23 23 C 1.42901 * 113.99554 * 180.02562 * 22 21 19 24 24 C 1.53005 * 109.46660 * 180.02562 * 23 22 21 25 25 O 1.42898 * 109.47241 * 64.99622 * 24 23 22 26 26 C 1.42904 * 114.00316 * 179.97438 * 25 24 23 27 27 C 1.47845 * 111.00327 * 190.71480 * 16 15 13 28 28 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47315 * 299.99705 * 1 2 3 30 30 H 1.08994 * 109.47068 * 60.00565 * 1 2 3 31 31 H 1.09000 * 109.47572 * 239.99608 * 2 1 3 32 32 H 1.09004 * 109.47218 * 119.99925 * 2 1 3 33 33 H 1.09007 * 109.47078 * 329.99917 * 4 3 2 34 34 H 1.09003 * 109.46733 * 210.00639 * 4 3 2 35 35 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47321 * 300.00085 * 15 13 3 37 37 H 1.09000 * 109.47711 * 59.99662 * 15 13 3 38 38 H 1.08998 * 109.88915 * 242.66532 * 17 16 15 39 39 H 1.08999 * 109.88734 * 3.85135 * 17 16 15 40 40 H 1.08999 * 110.70177 * 140.66343 * 18 17 16 41 41 H 1.08995 * 110.70560 * 263.90154 * 18 17 16 42 42 H 1.09006 * 109.47191 * 53.54396 * 21 19 18 43 43 H 1.09000 * 109.47348 * 173.54480 * 21 19 18 44 44 H 1.08996 * 109.47024 * 299.99418 * 23 22 21 45 45 H 1.08991 * 109.47655 * 59.99965 * 23 22 21 46 46 H 1.08998 * 109.46981 * 184.99964 * 24 23 22 47 47 H 1.09001 * 109.47229 * 304.99819 * 24 23 22 48 48 H 1.08993 * 109.47647 * 180.02562 * 26 25 24 49 49 H 1.08997 * 109.47168 * 300.00504 * 26 25 24 50 50 H 1.09001 * 109.46520 * 60.00172 * 26 25 24 51 51 H 1.09001 * 110.37057 * 332.46857 * 27 16 15 52 52 H 1.08997 * 110.37046 * 94.80159 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6857 1.8351 1.7037 6 1 4.3427 1.2303 1.0962 7 6 4.1490 2.3898 2.8780 8 7 3.3490 3.1259 3.6181 9 14 5.9130 2.0957 3.4175 10 1 6.1606 2.7959 4.7036 11 1 6.1401 0.6390 3.5948 12 1 6.8409 2.6190 2.3830 13 6 2.2430 2.0166 -1.1672 14 8 2.6468 3.1601 -1.1672 15 6 1.9924 1.3059 -2.4723 16 7 2.3110 2.2057 -3.5889 17 6 3.7641 2.4380 -3.6822 18 6 4.2036 2.0207 -5.1013 19 6 2.8864 2.1112 -5.9160 20 1 2.6923 3.1362 -6.2319 21 6 2.9202 1.1669 -7.1193 22 8 3.9142 1.6106 -8.0452 23 6 4.0276 0.7934 -9.2120 24 6 5.1159 1.3590 -10.1268 25 8 6.3835 1.2641 -9.4741 26 6 7.4747 1.7674 -10.2475 27 6 1.8408 1.6438 -4.8730 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5816 1.6878 2.0284 34 1 2.0954 3.1411 1.1383 35 1 3.6748 3.5157 4.4443 36 1 2.6229 0.4186 -2.5298 37 1 0.9445 1.0113 -2.5303 38 1 3.9818 3.4940 -3.5220 39 1 4.2847 1.8331 -2.9398 40 1 4.9478 2.7138 -5.4937 41 1 4.5876 1.0006 -5.1015 42 1 3.1612 0.1584 -6.7831 43 1 1.9452 1.1642 -7.6065 44 1 4.2913 -0.2229 -8.9195 45 1 3.0756 0.7834 -9.7425 46 1 5.1419 0.7892 -11.0556 47 1 4.8982 2.4039 -10.3475 48 1 8.4007 1.6592 -9.6829 49 1 7.5496 1.2059 -11.1786 50 1 7.3060 2.8209 -10.4710 51 1 1.8142 0.5552 -4.8238 52 1 0.8551 2.0374 -5.1211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362354177.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:17 Heat of formation + Delta-G solvation = -118.967431 kcal Electronic energy + Delta-G solvation = -28595.823263 eV Core-core repulsion = 24595.928330 eV Total energy + Delta-G solvation = -3999.894933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.72040 -38.83087 -38.16318 -37.18279 -35.14035 -33.00484 -32.54645 -30.59808 -30.02142 -29.31545 -27.95420 -26.66824 -26.13659 -24.44920 -22.98123 -22.92135 -22.40343 -20.75423 -20.47482 -18.10991 -17.38858 -17.03189 -16.55738 -16.40930 -16.21427 -15.95340 -15.60648 -15.47792 -15.22478 -14.80985 -14.40403 -14.14254 -13.60490 -13.51241 -13.34654 -13.23663 -13.08740 -12.84015 -12.54233 -12.29169 -12.11807 -11.94894 -11.84295 -11.74056 -11.54961 -11.48985 -11.22664 -11.09073 -10.99975 -10.87958 -10.78495 -10.68606 -10.52612 -10.47099 -10.07582 -10.06353 -9.85823 -9.59219 -8.80308 -8.38462 -8.06082 -7.56579 -5.99327 -4.03821 3.24873 3.34632 3.39147 3.39656 3.41794 3.56088 3.80091 4.27096 4.48600 4.56103 4.64173 4.69615 4.77567 4.80883 4.91662 4.98133 5.04792 5.07113 5.13186 5.16429 5.27870 5.31645 5.32263 5.34431 5.34882 5.37356 5.44264 5.46977 5.57260 5.64187 5.69364 5.74869 5.84036 5.98523 6.06274 6.11952 6.19485 6.27354 6.48452 6.52227 6.74623 6.92991 7.02721 7.12977 7.23562 7.52683 7.64178 7.97886 8.29772 8.53098 8.96507 9.23570 9.61152 11.08569 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.002302 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.543845 B =12158.634826 C =13519.752201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.602 5.602 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.286 1.286 11 H -0.278 1.278 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.522 6.522 15 C 0.033 3.967 16 N -0.509 5.509 17 C 0.051 3.949 18 C -0.130 4.130 19 C -0.095 4.095 20 H 0.093 0.907 21 C 0.074 3.926 22 O -0.376 6.376 23 C 0.063 3.937 24 C 0.063 3.937 25 O -0.383 6.383 26 C 0.031 3.969 27 C 0.051 3.949 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.087 0.913 49 H 0.039 0.961 50 H 0.042 0.958 51 H 0.046 0.954 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 -8.781 -27.030 28.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.203 1.203 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.397 6.397 15 C -0.099 4.099 16 N -0.233 5.233 17 C -0.076 4.076 18 C -0.168 4.168 19 C -0.114 4.114 20 H 0.111 0.889 21 C -0.003 4.003 22 O -0.295 6.295 23 C -0.014 4.014 24 C -0.014 4.014 25 O -0.301 6.301 26 C -0.066 4.066 27 C -0.076 4.076 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.105 0.895 49 H 0.057 0.943 50 H 0.060 0.940 51 H 0.064 0.936 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.838 -7.488 -26.493 27.593 hybrid contribution 1.170 -1.201 -0.048 1.677 sum -0.668 -8.689 -26.542 27.936 Atomic orbital electron populations 1.22223 0.96877 1.01263 1.02374 1.21384 0.93464 0.84444 1.02425 1.48256 1.64396 1.13137 1.07706 1.19224 0.96064 0.93669 0.78137 1.21395 0.96991 1.31781 1.06149 0.92687 1.24938 0.97770 0.94997 0.96451 1.69926 1.35673 1.33465 1.14330 0.86577 0.84951 0.78166 0.77818 1.21202 1.20333 1.20193 1.20116 0.78967 0.87142 0.84658 1.90668 1.44560 1.17622 1.86852 1.22286 1.02112 0.94190 0.91303 1.63281 1.14975 1.43673 1.01402 1.22808 0.86642 1.02945 0.95225 1.22810 0.97148 1.01821 0.95064 1.22247 0.95927 1.00292 0.92926 0.88901 1.22438 0.90878 0.97147 0.89832 1.87971 1.58298 1.52240 1.30974 1.22490 0.96799 0.94871 0.87199 1.22558 0.83682 1.00799 0.94362 1.87982 1.15162 1.83719 1.43266 1.22752 0.90125 0.97858 0.95829 1.22994 0.98596 0.97517 0.88542 0.92308 0.92006 0.93067 0.92085 0.90060 0.95158 0.93914 0.92723 0.92556 0.88786 0.89679 0.92676 0.90341 0.91790 0.93296 0.93221 0.92532 0.91878 0.91963 0.92368 0.89492 0.94267 0.93965 0.93621 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.74 5.93 -4.04 -0.02 1.72 16 3 N -0.60 -12.94 2.46 -175.06 -0.43 -13.37 16 4 C 0.25 6.61 5.16 -5.20 -0.03 6.58 16 5 C -0.52 -15.09 9.39 -34.44 -0.32 -15.42 16 6 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.51 10.85 7.32 -10.99 -0.08 10.77 16 14 O -0.52 -13.58 15.13 5.56 0.08 -13.50 16 15 C 0.03 0.51 3.58 -4.98 -0.02 0.50 16 16 N -0.51 -7.96 4.85 -232.69 -1.13 -9.09 16 17 C 0.05 0.82 5.65 -2.83 -0.02 0.80 16 18 C -0.13 -1.66 6.27 -24.91 -0.16 -1.82 16 19 C -0.09 -1.05 3.32 -88.48 -0.29 -1.35 16 20 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 21 C 0.07 0.69 5.38 37.16 0.20 0.89 16 22 O -0.38 -4.06 10.16 -40.09 -0.41 -4.47 16 23 C 0.06 0.49 6.32 37.16 0.23 0.73 16 24 C 0.06 0.47 6.32 37.16 0.23 0.71 16 25 O -0.38 -3.89 10.67 -40.09 -0.43 -4.31 16 26 C 0.03 0.21 11.01 101.05 1.11 1.32 16 27 C 0.05 0.59 6.15 -2.30 -0.01 0.57 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 31 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 32 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.03 0.81 8.07 -51.92 -0.42 0.40 16 34 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.06 0.81 7.22 -51.93 -0.37 0.44 16 37 H 0.09 1.27 7.12 -51.93 -0.37 0.90 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.05 0.96 7.31 -51.93 -0.38 0.58 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.79 8.01 -51.93 -0.42 0.37 16 42 H 0.05 0.43 8.11 -51.93 -0.42 0.01 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 50 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 51 H 0.05 0.46 7.70 -51.93 -0.40 0.06 16 52 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 417.71 15.07 6.29 6.29 Total: -1.00 -35.38 417.71 -8.95 -44.33 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -9.76 Total: -2.56 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 1.11 Total: 5.75 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.82 Total: -48.74 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.75 Total: -22.28 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.38 -8.95 -44.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362354177.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.637 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds