Wall clock time and date at job start Tue Mar 31 2020 04:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.47261 * 2 1 4 4 C 1.46497 * 120.00078 * 89.99850 * 3 2 1 5 5 C 1.50694 * 109.47115 * 90.00278 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.34777 * 119.99744 * 269.99948 * 3 2 1 14 14 O 1.21279 * 119.99709 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99969 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47178 * 180.02562 * 15 13 3 17 17 C 1.47447 * 111.00057 * 69.87042 * 16 15 13 18 18 C 1.54319 * 107.23190 * 123.25864 * 17 16 15 19 19 C 1.55143 * 103.01869 * 22.28705 * 18 17 16 20 20 H 1.08999 * 110.99381 * 82.46896 * 19 18 17 21 21 C 1.52997 * 110.98947 * 206.25374 * 19 18 17 22 22 O 1.42904 * 109.47073 * 293.54525 * 21 19 18 23 23 C 1.42901 * 113.99554 * 180.02562 * 22 21 19 24 24 C 1.53005 * 109.46660 * 180.02562 * 23 22 21 25 25 O 1.42898 * 109.47241 * 64.99622 * 24 23 22 26 26 C 1.42904 * 114.00316 * 179.97438 * 25 24 23 27 27 C 1.47845 * 111.00327 * 190.71480 * 16 15 13 28 28 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47315 * 299.99705 * 1 2 3 30 30 H 1.08994 * 109.47068 * 60.00565 * 1 2 3 31 31 H 1.09000 * 109.47572 * 239.99608 * 2 1 3 32 32 H 1.09004 * 109.47218 * 119.99925 * 2 1 3 33 33 H 1.09007 * 109.47078 * 329.99917 * 4 3 2 34 34 H 1.09003 * 109.46733 * 210.00639 * 4 3 2 35 35 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47321 * 300.00085 * 15 13 3 37 37 H 1.09000 * 109.47711 * 59.99662 * 15 13 3 38 38 H 1.08998 * 109.88915 * 242.66532 * 17 16 15 39 39 H 1.08999 * 109.88734 * 3.85135 * 17 16 15 40 40 H 1.08999 * 110.70177 * 140.66343 * 18 17 16 41 41 H 1.08995 * 110.70560 * 263.90154 * 18 17 16 42 42 H 1.09006 * 109.47191 * 53.54396 * 21 19 18 43 43 H 1.09000 * 109.47348 * 173.54480 * 21 19 18 44 44 H 1.08996 * 109.47024 * 299.99418 * 23 22 21 45 45 H 1.08991 * 109.47655 * 59.99965 * 23 22 21 46 46 H 1.08998 * 109.46981 * 184.99964 * 24 23 22 47 47 H 1.09001 * 109.47229 * 304.99819 * 24 23 22 48 48 H 1.08993 * 109.47647 * 180.02562 * 26 25 24 49 49 H 1.08997 * 109.47168 * 300.00504 * 26 25 24 50 50 H 1.09001 * 109.46520 * 60.00172 * 26 25 24 51 51 H 1.09001 * 110.37057 * 332.46857 * 27 16 15 52 52 H 1.08997 * 110.37046 * 94.80159 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6857 1.8351 1.7037 6 1 4.3427 1.2303 1.0962 7 6 4.1490 2.3898 2.8780 8 7 3.3490 3.1259 3.6181 9 14 5.9130 2.0957 3.4175 10 1 6.1606 2.7959 4.7036 11 1 6.1401 0.6390 3.5948 12 1 6.8409 2.6190 2.3830 13 6 2.2430 2.0166 -1.1672 14 8 2.6468 3.1601 -1.1672 15 6 1.9924 1.3059 -2.4723 16 7 2.3110 2.2057 -3.5889 17 6 3.7641 2.4380 -3.6822 18 6 4.2036 2.0207 -5.1013 19 6 2.8864 2.1112 -5.9160 20 1 2.6923 3.1362 -6.2319 21 6 2.9202 1.1669 -7.1193 22 8 3.9142 1.6106 -8.0452 23 6 4.0276 0.7934 -9.2120 24 6 5.1159 1.3590 -10.1268 25 8 6.3835 1.2641 -9.4741 26 6 7.4747 1.7674 -10.2475 27 6 1.8408 1.6438 -4.8730 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5816 1.6878 2.0284 34 1 2.0954 3.1411 1.1383 35 1 3.6748 3.5157 4.4443 36 1 2.6229 0.4186 -2.5298 37 1 0.9445 1.0113 -2.5303 38 1 3.9818 3.4940 -3.5220 39 1 4.2847 1.8331 -2.9398 40 1 4.9478 2.7138 -5.4937 41 1 4.5876 1.0006 -5.1015 42 1 3.1612 0.1584 -6.7831 43 1 1.9452 1.1642 -7.6065 44 1 4.2913 -0.2229 -8.9195 45 1 3.0756 0.7834 -9.7425 46 1 5.1419 0.7892 -11.0556 47 1 4.8982 2.4039 -10.3475 48 1 8.4007 1.6592 -9.6829 49 1 7.5496 1.2059 -11.1786 50 1 7.3060 2.8209 -10.4710 51 1 1.8142 0.5552 -4.8238 52 1 0.8551 2.0374 -5.1211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362354177.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:16 Heat of formation + Delta-G solvation = -144.784561 kcal Electronic energy + Delta-G solvation = -28596.942778 eV Core-core repulsion = 24595.928330 eV Total energy + Delta-G solvation = -4001.014448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.06273 -39.85985 -39.08763 -37.96170 -36.84828 -34.94563 -33.80351 -31.63120 -31.29031 -30.28026 -29.57916 -27.76733 -27.11317 -25.52788 -24.67197 -23.92766 -23.47580 -21.99630 -21.38643 -19.70637 -18.61945 -18.08519 -17.86457 -17.63419 -17.41735 -17.14499 -16.65922 -16.37195 -16.18781 -16.03476 -15.75931 -15.69278 -14.79217 -14.66077 -14.51393 -14.43510 -14.28788 -13.93913 -13.68560 -13.50258 -13.40208 -13.22287 -13.11515 -12.92899 -12.88290 -12.63686 -12.52588 -12.40194 -12.22474 -12.19423 -12.11688 -11.91542 -11.82773 -11.73159 -11.65427 -11.56465 -10.64558 -10.63597 -10.52445 -10.48831 -9.39287 -9.24833 -8.22112 -6.37073 1.34477 1.39397 1.46473 1.90828 2.23516 2.40356 2.66901 2.88879 3.06153 3.07306 3.61027 3.76970 3.84303 3.85986 4.09715 4.12092 4.23631 4.28272 4.30351 4.35574 4.39809 4.41487 4.47497 4.50038 4.51927 4.57544 4.61140 4.63443 4.66488 4.70313 4.75613 4.82567 4.86328 4.95478 4.97743 5.01314 5.05490 5.06976 5.17592 5.23508 5.34558 5.41368 5.58645 5.86086 5.93223 6.06180 6.08135 6.20706 6.36140 6.71106 6.86437 7.29180 7.57660 8.84513 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.002302 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.543845 B =12158.634826 C =13519.752201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.005 3.995 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.277 1.277 11 H -0.259 1.259 12 H -0.279 1.279 13 C 0.494 3.506 14 O -0.582 6.582 15 C 0.049 3.951 16 N -0.535 5.535 17 C 0.056 3.944 18 C -0.120 4.120 19 C -0.089 4.089 20 H 0.081 0.919 21 C 0.078 3.922 22 O -0.405 6.405 23 C 0.058 3.942 24 C 0.057 3.943 25 O -0.417 6.417 26 C 0.026 3.974 27 C 0.055 3.945 28 H 0.096 0.904 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.021 0.979 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.080 0.920 37 H 0.129 0.871 38 H 0.049 0.951 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.087 0.913 49 H 0.057 0.943 50 H 0.045 0.955 51 H 0.073 0.927 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 -11.778 -29.401 31.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.069 0.931 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.202 1.202 11 H -0.183 1.183 12 H -0.205 1.205 13 C 0.282 3.718 14 O -0.462 6.462 15 C -0.082 4.082 16 N -0.260 5.260 17 C -0.072 4.072 18 C -0.158 4.158 19 C -0.108 4.108 20 H 0.099 0.901 21 C 0.002 3.998 22 O -0.325 6.325 23 C -0.018 4.018 24 C -0.019 4.019 25 O -0.337 6.337 26 C -0.070 4.070 27 C -0.071 4.071 28 H 0.115 0.885 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.146 0.854 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.074 0.926 48 H 0.106 0.894 49 H 0.075 0.925 50 H 0.064 0.936 51 H 0.091 0.909 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.364 -10.544 -28.894 30.848 hybrid contribution 1.296 -0.229 0.666 1.475 sum -1.068 -10.772 -28.228 30.232 Atomic orbital electron populations 1.22150 0.94463 1.03509 1.01709 1.21741 0.95414 0.81336 1.03758 1.48298 1.64395 1.15115 1.06121 1.18646 0.95161 0.91392 0.80530 1.21662 0.97905 1.31929 1.06428 0.93091 1.25884 1.02428 0.94537 0.96496 1.70052 1.37794 1.34185 1.14765 0.85480 0.78995 0.79068 0.77336 1.20245 1.18333 1.20503 1.21257 0.77426 0.86736 0.86376 1.90636 1.47175 1.20511 1.87858 1.22186 1.04483 0.93716 0.87793 1.63169 1.14394 1.45080 1.03318 1.22613 0.87466 1.00457 0.96679 1.22695 0.98081 1.01851 0.93204 1.22186 0.94443 1.00491 0.93644 0.90055 1.22420 0.91857 0.96568 0.89003 1.87935 1.58975 1.53404 1.32161 1.22709 0.98136 0.94421 0.86549 1.22753 0.82756 1.01213 0.95208 1.87927 1.16578 1.84146 1.45019 1.22881 0.89449 0.98304 0.96360 1.23081 0.98938 0.99059 0.86048 0.88500 0.94466 0.91983 0.88311 0.91145 0.96097 0.98908 0.92432 0.90185 0.85362 0.93243 0.94829 0.91270 0.90833 0.92372 0.90804 0.92431 0.89274 0.89386 0.92620 0.89408 0.92459 0.93647 0.90903 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 10.24 71.98 0.74 -3.20 16 2 C 0.10 3.06 5.93 86.38 0.51 3.57 16 3 N -0.61 -26.53 2.46 -826.15 -2.03 -28.56 16 4 C 0.26 14.81 5.16 85.63 0.44 15.25 16 5 C -0.54 -32.17 9.39 25.60 0.24 -31.93 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.32 5.46 84.66 0.46 0.78 16 8 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 9 Si 0.97 46.21 29.54 68.60 2.03 48.24 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 12 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 13 C 0.49 21.53 7.32 87.66 0.64 22.17 16 14 O -0.58 -32.07 15.13 -3.03 -0.05 -32.12 16 15 C 0.05 1.45 3.58 85.56 0.31 1.75 16 16 N -0.53 -16.16 4.85 -890.10 -4.32 -20.48 16 17 C 0.06 1.84 5.65 86.65 0.49 2.33 16 18 C -0.12 -3.01 6.27 31.78 0.20 -2.81 16 19 C -0.09 -1.79 3.32 -9.41 -0.03 -1.83 16 20 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 21 C 0.08 1.20 5.38 71.98 0.39 1.59 16 22 O -0.40 -7.95 10.16 -144.33 -1.47 -9.42 16 23 C 0.06 0.76 6.32 71.98 0.45 1.22 16 24 C 0.06 0.75 6.32 71.98 0.45 1.21 16 25 O -0.42 -8.08 10.67 -144.33 -1.54 -9.62 16 26 C 0.03 0.33 11.01 113.37 1.25 1.58 16 27 C 0.06 1.09 6.15 86.77 0.53 1.62 16 28 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.40 7.22 -2.39 -0.02 1.38 16 31 H 0.10 2.30 6.44 -2.39 -0.02 2.28 16 32 H 0.07 2.31 8.07 -2.38 -0.02 2.29 16 33 H 0.02 1.19 8.07 -2.38 -0.02 1.17 16 34 H -0.01 -0.47 7.42 -2.39 -0.02 -0.49 16 35 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.08 2.02 7.22 -2.39 -0.02 2.00 16 37 H 0.13 2.91 7.12 -2.39 -0.02 2.90 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.03 1.21 7.31 -2.39 -0.02 1.19 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 1.71 8.01 -2.39 -0.02 1.69 16 42 H 0.06 0.80 8.11 -2.38 -0.02 0.78 16 43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 50 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 51 H 0.07 1.08 7.70 -2.39 -0.02 1.07 16 52 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -83.09 417.71 0.85 -82.24 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.86 Total: 13.87 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 7.08 Total: 13.32 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -6.06 Total: -106.52 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -3.05 Total: -51.16 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -83.09 0.85 -82.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362354177.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.540 kcal (2) G-P(sol) polarization free energy of solvation -83.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds