Wall clock time and date at job start Tue Mar 31 2020 04:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47206 * 2 1 4 4 C 1.46506 * 119.99755 * 89.99900 * 3 2 1 5 5 C 1.50703 * 109.47289 * 270.00096 * 4 3 2 6 6 H 1.07994 * 119.99399 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99789 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99734 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00111 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47123 * 89.99915 * 9 7 5 11 11 H 1.48498 * 109.47161 * 209.99603 * 9 7 5 12 12 H 1.48497 * 109.47329 * 329.99749 * 9 7 5 13 13 C 1.34774 * 120.00377 * 270.00089 * 3 2 1 14 14 O 1.21289 * 120.00200 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00038 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47644 * 179.97438 * 15 13 3 17 17 C 1.47020 * 111.00106 * 293.64051 * 16 15 13 18 18 C 1.53099 * 109.25857 * 177.60554 * 17 16 15 19 19 O 1.43011 * 109.26063 * 56.84300 * 18 17 16 20 20 C 1.43013 * 113.73908 * 301.33077 * 19 18 17 21 21 H 1.08999 * 109.54228 * 298.71444 * 20 19 18 22 22 C 1.53008 * 109.50712 * 178.60565 * 20 19 18 23 23 O 1.42898 * 109.47238 * 65.21494 * 22 20 19 24 24 C 1.42894 * 114.00078 * 180.02562 * 23 22 20 25 25 C 1.52997 * 109.47222 * 90.00380 * 24 23 22 26 26 C 1.52999 * 109.47340 * 210.00469 * 24 23 22 27 27 C 1.47015 * 111.00483 * 170.00010 * 16 15 13 28 28 H 1.08998 * 109.46968 * 299.99920 * 1 2 3 29 29 H 1.09003 * 109.47167 * 59.99424 * 1 2 3 30 30 H 1.08996 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46877 * 240.00623 * 2 1 3 32 32 H 1.08995 * 109.47204 * 120.00268 * 2 1 3 33 33 H 1.09001 * 109.47060 * 30.00546 * 4 3 2 34 34 H 1.09004 * 109.47073 * 150.00035 * 4 3 2 35 35 H 0.97007 * 120.00011 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47424 * 300.00151 * 15 13 3 37 37 H 1.09003 * 109.47504 * 60.00089 * 15 13 3 38 38 H 1.08999 * 109.50399 * 297.53422 * 17 16 15 39 39 H 1.09000 * 109.50468 * 57.66825 * 17 16 15 40 40 H 1.09010 * 109.50077 * 296.91024 * 18 17 16 41 41 H 1.08996 * 109.53980 * 176.80362 * 18 17 16 42 42 H 1.09005 * 109.47060 * 185.21998 * 22 20 19 43 43 H 1.08998 * 109.46566 * 305.21572 * 22 20 19 44 44 H 1.08999 * 109.47232 * 330.00011 * 24 23 22 45 45 H 1.09001 * 109.47048 * 180.02562 * 25 24 23 46 46 H 1.09006 * 109.46550 * 299.99948 * 25 24 23 47 47 H 1.08999 * 109.47318 * 59.99683 * 25 24 23 48 48 H 1.09004 * 109.47491 * 59.99462 * 26 24 23 49 49 H 1.09001 * 109.47475 * 180.02562 * 26 24 23 50 50 H 1.08999 * 109.47078 * 300.00129 * 26 24 23 51 51 H 1.08997 * 109.50280 * 302.32894 * 27 16 15 52 52 H 1.08994 * 109.50408 * 62.45887 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 1.0067 2.7822 1.7039 6 1 0.1157 2.7246 1.0963 7 6 0.9950 3.5047 2.8781 8 7 -0.1008 4.1250 3.2575 9 14 2.5359 3.6035 3.9293 10 1 3.3481 4.7732 3.5083 11 1 2.1529 3.7547 5.3561 12 1 3.3317 2.3614 3.7593 13 6 2.2430 2.0166 -1.1671 14 8 2.6469 3.1603 -1.1671 15 6 1.9913 1.3065 -2.4723 16 7 2.3090 2.2066 -3.5888 17 6 1.3771 3.3430 -3.6311 18 6 1.7798 4.2842 -4.7694 19 8 1.8006 3.5550 -5.9995 20 6 2.6983 2.4416 -5.9936 21 1 3.7165 2.7951 -5.8313 22 6 2.6181 1.7137 -7.3370 23 8 3.0961 2.5731 -8.3738 24 6 3.0631 1.9865 -9.6763 25 6 1.7154 2.2851 -10.3362 26 6 4.1896 2.5738 -10.5289 27 6 2.3048 1.4816 -4.8677 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.5506 1.3451 2.0284 34 1 3.0645 2.7985 1.1385 35 1 -0.1090 4.6337 4.0835 36 1 2.6211 0.4187 -2.5303 37 1 0.9432 1.0127 -2.5299 38 1 0.3647 2.9772 -3.8022 39 1 1.4154 3.8805 -2.6836 40 1 2.7712 4.6918 -4.5711 41 1 1.0591 5.0987 -4.8412 42 1 3.2316 0.8134 -7.2996 43 1 1.5830 1.4397 -7.5405 44 1 3.1955 0.9078 -9.5926 45 1 1.6900 1.8373 -11.3296 46 1 0.9129 1.8666 -9.7287 47 1 1.5829 3.3638 -10.4200 48 1 5.1498 2.3612 -10.0589 49 1 4.1641 2.1267 -11.5227 50 1 4.0572 3.6525 -10.6128 51 1 3.0202 0.6605 -4.8229 52 1 1.3073 1.0861 -5.0586 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364196470.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:21 Heat of formation + Delta-G solvation = -116.345484 kcal Electronic energy + Delta-G solvation = -29333.591325 eV Core-core repulsion = 25333.810088 eV Total energy + Delta-G solvation = -3999.781237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.05631 -39.02076 -38.23713 -35.73076 -35.05811 -33.46424 -32.66921 -31.53526 -30.28697 -29.49403 -27.83717 -27.53431 -26.48050 -24.40299 -22.97247 -22.69502 -21.80605 -21.60229 -20.35877 -18.42748 -17.22671 -16.97312 -16.77494 -16.44834 -16.25346 -15.51873 -15.38086 -15.25273 -14.97150 -14.58142 -14.39840 -14.04017 -13.95551 -13.51284 -13.34323 -13.22491 -12.97619 -12.87218 -12.59907 -12.54223 -12.44449 -12.42257 -11.94755 -11.88193 -11.72020 -11.62509 -11.38979 -11.30852 -11.18575 -10.92041 -10.91412 -10.64425 -10.50863 -10.42515 -10.12853 -9.82255 -9.68191 -9.48881 -8.94837 -8.58722 -8.28363 -7.72304 -6.08935 -4.07187 3.17227 3.29093 3.32618 3.35025 3.37350 3.59953 3.70905 4.10303 4.39522 4.53467 4.71732 4.79244 4.82612 4.88346 4.93069 4.95560 5.07670 5.15668 5.20791 5.24475 5.26057 5.28294 5.34389 5.39670 5.42326 5.47673 5.50104 5.52596 5.54902 5.62579 5.70282 5.76185 5.81609 5.86642 5.92135 6.05089 6.06624 6.16073 6.26196 6.65620 6.78996 6.85425 6.95353 6.98600 7.01708 7.22775 7.35864 7.61268 8.24977 8.46992 8.93123 9.00260 9.51783 11.04167 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.024334 B = 0.002340 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.360039 B =11962.629587 C =12327.801012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.112 3.888 3 N -0.595 5.595 4 C 0.217 3.783 5 C -0.525 4.525 6 H 0.076 0.924 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.510 3.490 14 O -0.523 6.523 15 C 0.038 3.962 16 N -0.517 5.517 17 C 0.012 3.988 18 C 0.068 3.932 19 O -0.376 6.376 20 C 0.098 3.902 21 H 0.076 0.924 22 C 0.073 3.927 23 O -0.372 6.372 24 C 0.080 3.920 25 C -0.175 4.175 26 C -0.150 4.150 27 C 0.027 3.973 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.114 0.886 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.085 0.915 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.905 -10.516 -23.155 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.012 4.012 3 N -0.328 5.328 4 C 0.096 3.904 5 C -0.563 4.563 6 H 0.094 0.906 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.191 1.191 13 C 0.296 3.704 14 O -0.399 6.399 15 C -0.093 4.093 16 N -0.242 5.242 17 C -0.116 4.116 18 C -0.009 4.009 19 O -0.295 6.295 20 C 0.040 3.960 21 H 0.093 0.907 22 C -0.004 4.004 23 O -0.291 6.291 24 C 0.022 3.978 25 C -0.232 4.232 26 C -0.207 4.207 27 C -0.102 4.102 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.132 0.868 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.083 0.917 51 H 0.104 0.896 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.478 -9.358 -23.034 25.459 hybrid contribution -0.284 -0.670 0.847 1.117 sum 5.194 -10.029 -22.187 24.896 Atomic orbital electron populations 1.22236 0.96025 1.00940 1.03702 1.21405 0.94808 0.83323 1.01646 1.47967 1.64472 1.13376 1.06996 1.19667 0.98036 0.92767 0.79930 1.21326 0.97317 1.30655 1.07010 0.90629 1.24865 0.95991 0.94823 0.97426 1.69895 1.27224 1.32947 1.23576 0.86859 0.83862 0.79257 0.79745 1.19943 1.21170 1.19139 1.20085 0.78721 0.86945 0.84644 1.90638 1.45192 1.17300 1.86758 1.22070 1.00852 0.95868 0.90522 1.61807 1.52078 1.08978 1.01304 1.23017 0.92964 0.93244 1.02337 1.22663 1.02178 0.93567 0.82497 1.88003 1.63433 1.42622 1.35443 1.22018 0.94822 0.87180 0.92014 0.90654 1.22469 0.98995 0.92328 0.86643 1.88002 1.85282 1.40941 1.14903 1.22076 0.95411 0.96736 0.83558 1.22291 0.97380 1.03037 1.00506 1.21859 0.97872 1.02206 0.98752 1.22675 1.01004 0.96704 0.89777 0.90126 0.93408 0.92782 0.91997 0.90658 0.95356 0.94579 0.92613 0.88446 0.92075 0.94553 0.86849 0.91973 0.88337 0.91867 0.92611 0.92438 0.91876 0.92470 0.91626 0.92000 0.91376 0.91693 0.89617 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.24 37.16 0.38 -2.19 16 2 C 0.11 1.68 5.98 -4.04 -0.02 1.66 16 3 N -0.60 -11.86 2.46 -175.06 -0.43 -12.29 16 4 C 0.22 5.19 4.27 -5.19 -0.02 5.17 16 5 C -0.52 -14.67 9.48 -34.44 -0.33 -15.00 16 6 H 0.08 2.31 7.66 -52.49 -0.40 1.91 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 9 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 13 C 0.51 10.13 7.38 -10.99 -0.08 10.04 16 14 O -0.52 -12.53 13.93 5.55 0.08 -12.45 16 15 C 0.04 0.55 4.00 -4.98 -0.02 0.53 16 16 N -0.52 -7.67 4.46 -235.75 -1.05 -8.72 16 17 C 0.01 0.19 5.29 -3.71 -0.02 0.17 16 18 C 0.07 0.96 7.01 37.21 0.26 1.22 16 19 O -0.38 -5.37 10.44 -39.72 -0.41 -5.79 16 20 C 0.10 1.18 3.09 -26.68 -0.08 1.10 16 21 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 22 C 0.07 0.72 5.41 37.16 0.20 0.92 16 23 O -0.37 -4.19 9.96 -39.72 -0.40 -4.59 16 24 C 0.08 0.65 3.34 -26.73 -0.09 0.56 16 25 C -0.17 -1.32 9.53 37.16 0.35 -0.96 16 26 C -0.15 -1.04 9.56 37.16 0.36 -0.69 16 27 C 0.03 0.31 4.93 -3.71 -0.02 0.29 16 28 H 0.08 1.51 7.26 -51.93 -0.38 1.14 16 29 H 0.05 0.72 7.22 -51.93 -0.37 0.34 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16 32 H 0.07 1.07 7.89 -51.93 -0.41 0.66 16 33 H 0.03 0.65 6.95 -51.93 -0.36 0.29 16 34 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.10 1.16 7.30 -51.93 -0.38 0.78 16 37 H 0.06 0.84 7.16 -51.93 -0.37 0.47 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 2.16 5.88 -51.93 -0.31 1.85 16 40 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 41 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 43 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 44 H 0.06 0.39 7.79 -51.93 -0.40 -0.02 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 52 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 406.58 15.07 6.13 6.13 Total: -1.00 -34.16 406.58 -8.76 -42.92 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -9.55 Total: -0.18 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 0.77 Total: 4.77 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -0.71 Total: -47.62 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.73 Total: -22.83 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.16 -8.76 -42.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364196470.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.423 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds