Wall clock time and date at job start Tue Mar 31 2020 04:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47013 * 2 1 4 4 C 1.46497 * 120.00079 * 269.99952 * 3 2 1 5 5 C 1.50703 * 109.47311 * 269.99915 * 4 3 2 6 6 H 1.07999 * 119.99615 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00094 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00026 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99864 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46685 * 90.00389 * 9 7 5 11 11 H 1.48498 * 109.47153 * 210.00214 * 9 7 5 12 12 H 1.48500 * 109.47078 * 330.00425 * 9 7 5 13 13 C 1.34777 * 120.00004 * 90.00209 * 3 2 1 14 14 O 1.21277 * 120.00155 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99938 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47069 * 173.90967 * 15 13 3 17 17 C 1.47014 * 111.00140 * 170.00253 * 16 15 13 18 18 C 1.53089 * 109.26040 * 182.38944 * 17 16 15 19 19 O 1.43016 * 109.26057 * 303.15105 * 18 17 16 20 20 C 1.43018 * 113.73626 * 58.67195 * 19 18 17 21 21 H 1.08993 * 109.50703 * 61.26222 * 20 19 18 22 22 C 1.52999 * 109.50569 * 181.39897 * 20 19 18 23 23 O 1.42904 * 109.47004 * 294.99678 * 22 20 19 24 24 C 1.42895 * 114.00077 * 180.02562 * 23 22 20 25 25 C 1.53007 * 109.47097 * 90.00115 * 24 23 22 26 26 C 1.53004 * 109.47065 * 209.99621 * 24 23 22 27 27 C 1.47012 * 111.00027 * 293.63589 * 16 15 13 28 28 H 1.09002 * 109.47027 * 60.00007 * 1 2 3 29 29 H 1.08994 * 109.47034 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47051 * 300.00161 * 1 2 3 31 31 H 1.09001 * 109.47121 * 240.00276 * 2 1 3 32 32 H 1.08994 * 109.47355 * 120.00029 * 2 1 3 33 33 H 1.09004 * 109.47493 * 30.00429 * 4 3 2 34 34 H 1.09001 * 109.47489 * 150.00024 * 4 3 2 35 35 H 0.97002 * 119.99887 * 180.02562 * 8 7 5 36 36 H 1.08994 * 109.47500 * 53.90505 * 15 13 3 37 37 H 1.09008 * 109.47308 * 293.90615 * 15 13 3 38 38 H 1.09010 * 109.50715 * 302.32658 * 17 16 15 39 39 H 1.09006 * 109.50737 * 62.41055 * 17 16 15 40 40 H 1.09003 * 109.51035 * 183.21403 * 18 17 16 41 41 H 1.09005 * 109.50696 * 63.08908 * 18 17 16 42 42 H 1.09000 * 109.47241 * 54.99401 * 22 20 19 43 43 H 1.08993 * 109.47195 * 174.99885 * 22 20 19 44 44 H 1.08996 * 109.46997 * 329.99672 * 24 23 22 45 45 H 1.08996 * 109.47042 * 60.00004 * 25 24 23 46 46 H 1.08994 * 109.46613 * 180.02562 * 25 24 23 47 47 H 1.08997 * 109.46445 * 299.99769 * 25 24 23 48 48 H 1.09004 * 109.47216 * 60.00057 * 26 24 23 49 49 H 1.08997 * 109.46845 * 179.97438 * 26 24 23 50 50 H 1.08996 * 109.47254 * 299.99893 * 26 24 23 51 51 H 1.09002 * 109.50634 * 57.67266 * 27 16 15 52 52 H 1.09006 * 109.54111 * 297.56727 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1491 2.3898 -2.8780 8 7 3.3491 3.1258 -3.6181 9 14 5.9136 2.0969 -3.4168 10 1 5.9775 0.8756 -4.2591 11 1 6.3921 3.2641 -4.2002 12 1 6.7736 1.9181 -2.2195 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.4459 2.1509 3.5850 17 6 2.0056 1.6031 4.8762 18 6 2.4482 2.5429 6.0008 19 8 3.8668 2.7148 5.9410 20 6 4.3302 3.2473 4.6972 21 1 3.8958 4.2344 4.5395 22 6 5.8559 3.3581 4.7258 23 8 6.2457 4.3136 5.7143 24 6 7.6590 4.4944 5.8226 25 6 8.1053 5.6067 4.8714 26 6 8.0154 4.8791 7.2599 27 6 3.9067 2.3146 3.5595 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5817 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1384 35 1 3.6749 3.5157 -4.4444 36 1 2.5385 0.3638 2.4844 37 1 0.9246 1.1086 2.5786 38 1 0.9192 1.5143 4.8825 39 1 2.4520 0.6199 5.0258 40 1 2.1740 2.1125 6.9640 41 1 1.9590 3.5096 5.8809 42 1 6.2863 2.3869 4.9697 43 1 6.2152 3.6796 3.7482 44 1 8.1653 3.5659 5.5588 45 1 7.5990 6.5352 5.1353 46 1 9.1834 5.7442 4.9537 47 1 7.8514 5.3326 3.8475 48 1 7.6975 4.0867 7.9376 49 1 9.0935 5.0165 7.3426 50 1 7.5091 5.8076 7.5237 51 1 4.2081 2.7452 2.6045 52 1 4.3847 1.3434 3.6879 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364196471.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:23 Heat of formation + Delta-G solvation = -121.833378 kcal Electronic energy + Delta-G solvation = -29644.441907 eV Core-core repulsion = 25644.422697 eV Total energy + Delta-G solvation = -4000.019210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.00450 -38.86058 -38.11328 -35.64705 -35.00713 -33.31020 -32.81358 -31.44459 -30.13527 -29.46462 -27.50729 -27.26205 -26.16849 -24.57575 -23.04209 -22.74603 -21.93471 -21.44847 -20.31552 -18.34032 -17.03393 -16.74043 -16.46990 -16.44480 -16.16040 -15.43077 -15.36467 -15.27273 -14.86581 -14.49757 -14.37659 -14.15444 -13.83132 -13.49800 -13.32914 -13.15882 -12.89139 -12.83058 -12.58879 -12.38631 -12.25596 -12.03703 -11.92310 -11.85505 -11.62462 -11.55157 -11.29678 -11.19719 -11.05912 -10.92428 -10.77990 -10.72741 -10.57174 -10.43007 -10.13363 -9.68721 -9.64441 -9.60650 -8.87863 -8.45252 -8.23780 -7.65795 -6.05855 -4.10717 3.27557 3.33751 3.35232 3.37603 3.43706 3.63848 3.76879 4.17887 4.42981 4.72989 4.86740 4.88037 4.96223 4.97301 5.03940 5.08675 5.15629 5.19326 5.27150 5.28775 5.30329 5.39746 5.43348 5.45283 5.47803 5.51025 5.59091 5.63219 5.65805 5.70691 5.73078 5.77916 5.79146 5.98807 6.00921 6.03697 6.06367 6.10646 6.21099 6.45697 6.83312 6.96415 7.11600 7.15595 7.25857 7.44965 7.55050 7.90829 8.22346 8.42893 8.89207 9.11911 9.54489 11.02139 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.009399 B = 0.003628 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.328674 B = 7715.730579 C =10245.787404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.506 3.494 14 O -0.523 6.523 15 C 0.037 3.963 16 N -0.516 5.516 17 C 0.017 3.983 18 C 0.066 3.934 19 O -0.377 6.377 20 C 0.101 3.899 21 H 0.078 0.922 22 C 0.072 3.928 23 O -0.373 6.373 24 C 0.080 3.920 25 C -0.177 4.177 26 C -0.148 4.148 27 C 0.025 3.975 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.109 0.891 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 -4.478 18.915 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.291 3.709 14 O -0.399 6.399 15 C -0.094 4.094 16 N -0.241 5.241 17 C -0.112 4.112 18 C -0.011 4.011 19 O -0.296 6.296 20 C 0.043 3.957 21 H 0.096 0.904 22 C -0.005 4.005 23 O -0.293 6.293 24 C 0.022 3.978 25 C -0.235 4.235 26 C -0.205 4.205 27 C -0.103 4.103 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.114 0.886 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.127 0.873 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.991 -3.226 18.928 19.227 hybrid contribution 1.199 -1.226 -0.854 1.915 sum 2.190 -4.451 18.074 18.743 Atomic orbital electron populations 1.22219 0.96769 1.01363 1.02379 1.21416 0.93548 0.84343 1.02539 1.48278 1.64059 1.13169 1.07706 1.19251 0.96160 0.93681 0.78068 1.21419 0.96956 1.31854 1.06238 0.92612 1.24929 0.97775 0.94933 0.96426 1.69930 1.35676 1.33388 1.14282 0.86523 0.84760 0.77699 0.78581 1.20660 1.21059 1.19972 1.20093 0.79022 0.87113 0.84664 1.90653 1.44843 1.17608 1.86800 1.22113 1.01897 0.94597 0.90759 1.61778 1.12179 1.48778 1.01336 1.22843 1.01267 0.97058 0.89983 1.22602 0.81852 0.98958 0.97658 1.87998 1.21522 1.84815 1.35246 1.22057 0.92807 0.97462 0.83351 0.90368 1.22470 0.93375 0.92296 0.92331 1.87966 1.21933 1.61259 1.58112 1.22072 0.82075 0.97651 0.96017 1.22323 1.01273 0.99824 1.00069 1.21841 1.01033 1.02548 0.95066 1.22798 0.87581 0.98736 1.01214 0.91970 0.92220 0.93092 0.89964 0.91994 0.95089 0.93854 0.92712 0.92517 0.88292 0.89621 0.94106 0.88575 0.92178 0.92713 0.91359 0.92380 0.91708 0.91804 0.92193 0.92035 0.91487 0.91824 0.87276 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.65 5.96 -4.04 -0.02 1.62 16 3 N -0.60 -12.37 2.46 -175.06 -0.43 -12.80 16 4 C 0.25 6.38 5.16 -5.19 -0.03 6.36 16 5 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.51 10.31 7.25 -10.99 -0.08 10.23 16 14 O -0.52 -12.93 14.25 5.56 0.08 -12.85 16 15 C 0.04 0.56 4.18 -4.98 -0.02 0.54 16 16 N -0.52 -7.82 4.42 -235.75 -1.04 -8.86 16 17 C 0.02 0.19 5.64 -3.72 -0.02 0.17 16 18 C 0.07 0.77 7.01 37.20 0.26 1.03 16 19 O -0.38 -5.41 10.44 -39.95 -0.42 -5.82 16 20 C 0.10 1.49 3.09 -26.68 -0.08 1.41 16 21 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 22 C 0.07 0.97 5.41 37.16 0.20 1.17 16 23 O -0.37 -5.15 9.95 -39.95 -0.40 -5.55 16 24 C 0.08 0.86 3.34 -26.73 -0.09 0.77 16 25 C -0.18 -1.79 9.53 37.16 0.35 -1.44 16 26 C -0.15 -1.33 9.56 37.16 0.36 -0.98 16 27 C 0.02 0.39 4.58 -3.71 -0.02 0.37 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.62 7.41 -51.93 -0.38 0.24 16 31 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 32 H 0.06 0.80 6.27 -51.93 -0.33 0.47 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.06 0.77 7.05 -51.93 -0.37 0.41 16 37 H 0.10 1.26 7.30 -51.92 -0.38 0.88 16 38 H 0.09 0.83 8.09 -51.92 -0.42 0.41 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 43 H 0.07 0.89 7.87 -51.93 -0.41 0.49 16 44 H 0.06 0.58 7.79 -51.93 -0.40 0.17 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.11 2.05 6.10 -51.93 -0.32 1.73 16 52 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 412.67 15.07 6.22 6.22 Total: -1.00 -33.49 412.67 -9.18 -42.67 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -9.68 Total: -0.04 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 0.77 Total: 6.08 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.74 Total: -47.33 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.74 Total: -24.22 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.49 -9.18 -42.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364196471.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.162 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds