Wall clock time and date at job start Tue Mar 31 2020 05:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 119.99817 * 2 1 4 4 H 1.48492 * 109.47314 * 270.00220 * 3 2 1 5 5 H 1.48505 * 109.46940 * 30.00003 * 3 2 1 6 6 H 1.48501 * 109.47377 * 149.99730 * 3 2 1 7 7 C 1.39942 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00020 * 197.84490 * 7 2 1 9 9 C 1.41400 * 120.00299 * 17.84379 * 7 2 1 10 10 C 1.40710 * 120.24516 * 204.38481 * 9 7 2 11 11 C 1.37615 * 119.74572 * 180.02562 * 10 9 7 12 12 C 1.38643 * 120.24536 * 0.02562 * 11 10 9 13 13 S 1.76204 * 119.74923 * 179.97438 * 12 11 10 14 14 O 1.42102 * 106.39841 * 336.46159 * 13 12 11 15 15 O 1.42099 * 106.40099 * 203.54258 * 13 12 11 16 16 N 1.65590 * 107.21669 * 89.99916 * 13 12 11 17 17 C 1.46501 * 120.00252 * 65.00157 * 16 13 12 18 18 C 1.53000 * 109.47593 * 164.99801 * 17 16 13 19 19 H 1.09009 * 109.46686 * 305.00194 * 18 17 16 20 20 O 1.42902 * 109.47116 * 64.99977 * 18 17 16 21 21 C 1.52992 * 109.47405 * 185.00141 * 18 17 16 22 22 C 1.50703 * 109.47282 * 174.99886 * 21 18 17 23 23 O 1.20823 * 119.99660 * 359.97438 * 22 21 18 24 24 O 1.34234 * 119.99812 * 179.97438 * 22 21 18 25 25 C 1.38635 * 120.49981 * 0.25138 * 12 11 10 26 26 C 1.37611 * 120.24810 * 359.45317 * 25 12 11 27 27 H 0.96992 * 120.00351 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.12813 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.88144 * 179.97438 * 11 10 9 30 30 H 0.97006 * 120.00253 * 245.00217 * 16 13 12 31 31 H 1.09001 * 109.47187 * 284.99976 * 17 16 13 32 32 H 1.09001 * 109.46717 * 44.99851 * 17 16 13 33 33 H 0.96697 * 113.99890 * 59.99582 * 20 18 17 34 34 H 1.08997 * 109.47335 * 295.00321 * 21 18 17 35 35 H 1.09009 * 109.47305 * 54.99869 * 21 18 17 36 36 H 0.96703 * 116.99586 * 179.97438 * 24 22 21 37 37 H 1.08004 * 119.87204 * 179.70227 * 25 12 11 38 38 H 1.08000 * 120.12973 * 180.27716 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0465 -1.4000 5 1 1.4395 2.6527 0.7001 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2861 9 6 1.3521 -2.4069 -0.3763 10 6 1.8260 -3.6499 0.0824 11 6 1.1801 -4.8065 -0.2901 12 6 0.0668 -4.7502 -1.1145 13 16 -0.7498 -6.2394 -1.5839 14 8 0.2111 -7.2793 -1.4624 15 8 -1.4385 -5.9551 -2.7939 16 7 -1.9122 -6.5413 -0.4439 17 6 -3.0418 -5.6216 -0.2881 18 6 -4.1389 -6.2964 0.5377 19 1 -4.4112 -7.2447 0.0741 20 8 -3.6596 -6.5342 1.8627 21 6 -5.3669 -5.3857 0.5953 22 6 -6.4894 -6.1001 1.3031 23 8 -6.3241 -7.2227 1.7183 24 8 -7.6727 -5.4893 1.4722 25 6 -0.4053 -3.5316 -1.5770 26 6 0.2212 -2.3619 -1.2124 27 1 -0.4850 0.8399 0.0004 28 1 2.6938 -3.6961 0.7237 29 1 1.5421 -5.7617 0.0604 30 1 -1.8452 -7.3271 0.1209 31 1 -2.7072 -4.7181 0.2217 32 1 -3.4353 -5.3599 -1.2703 33 1 -3.3983 -5.7326 2.3362 34 1 -5.1178 -4.4736 1.1375 35 1 -5.6793 -5.1323 -0.4178 36 1 -8.3623 -5.9877 1.9317 37 1 -1.2705 -3.4999 -2.2227 38 1 -0.1510 -1.4132 -1.5702 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398331428.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:37 Heat of formation + Delta-G solvation = -212.665233 kcal Electronic energy + Delta-G solvation = -25610.797999 eV Core-core repulsion = 21544.374950 eV Total energy + Delta-G solvation = -4066.423049 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52972 -38.07332 -37.61841 -36.51325 -36.22336 -35.15921 -34.24229 -34.07502 -31.66498 -30.30541 -29.51287 -26.90434 -25.86491 -22.85015 -21.58702 -21.25991 -21.17478 -18.86218 -18.31618 -17.66462 -17.49874 -17.10081 -16.80064 -16.41946 -15.96475 -15.63197 -15.46680 -15.08533 -14.29051 -14.14004 -13.84883 -13.46310 -13.28373 -13.26965 -13.06897 -12.45128 -12.32240 -12.23075 -11.84084 -11.70499 -11.56911 -11.49953 -11.40088 -11.32151 -11.24787 -11.20648 -10.94817 -10.78369 -10.43837 -10.26117 -9.82179 -9.70352 -9.55904 -9.10783 -8.01202 -7.75394 -7.20059 -4.85207 1.21567 2.01372 2.20210 2.74270 2.84628 2.86851 2.89439 2.89757 3.62489 3.67477 4.16476 4.23662 4.37417 4.48890 4.60639 4.79159 5.10984 5.17526 5.22782 5.31235 5.34396 5.52144 5.88136 6.01796 6.04927 6.10180 6.27481 6.63326 6.66417 6.86623 7.00155 7.26998 7.30841 7.38314 7.51540 7.58409 7.67716 7.72530 7.92264 8.26901 8.46626 8.60002 9.71424 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.003486 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.228721 B = 8029.703869 C = 9705.960987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.435 4.435 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.239 4.239 11 C 0.004 3.996 12 C -0.788 4.788 13 S 2.695 3.305 14 O -0.984 6.984 15 O -0.985 6.985 16 N -1.121 6.121 17 C 0.090 3.910 18 C 0.114 3.886 19 H 0.114 0.886 20 O -0.545 6.545 21 C -0.151 4.151 22 C 0.479 3.521 23 O -0.500 6.500 24 O -0.521 6.521 25 C -0.018 4.018 26 C -0.183 4.183 27 H 0.289 0.711 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.415 0.585 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.376 0.624 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.409 0.591 37 H 0.103 0.897 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.955 -2.869 2.793 11.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.462 4.462 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.260 4.260 11 C -0.017 4.017 12 C -0.884 4.884 13 S 2.793 3.207 14 O -0.975 6.975 15 O -0.976 6.976 16 N -0.878 5.878 17 C -0.037 4.037 18 C 0.053 3.947 19 H 0.132 0.868 20 O -0.350 6.350 21 C -0.190 4.190 22 C 0.320 3.680 23 O -0.386 6.386 24 O -0.334 6.334 25 C -0.039 4.039 26 C -0.203 4.203 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.249 0.751 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.223 0.777 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.268 0.732 37 H 0.121 0.879 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.821 -3.835 1.695 11.605 hybrid contribution 0.067 1.455 1.194 1.883 sum -10.754 -2.380 2.888 11.387 Atomic orbital electron populations 1.69800 1.07914 1.30361 1.30827 1.26122 0.94906 1.02121 0.91748 0.86139 0.80537 0.79436 0.79830 1.18769 1.19856 1.18185 1.19968 0.98525 0.91185 1.36531 0.89417 1.17856 0.90050 0.92122 0.86402 1.21061 1.04440 0.92712 1.07764 1.20174 0.92106 0.97310 0.92072 1.29158 1.16600 1.15833 1.26809 1.01190 0.72328 0.74272 0.72864 1.93498 1.60434 1.56890 1.86680 1.93478 1.74507 1.86310 1.43260 1.55625 1.38381 1.36001 1.57799 1.21847 0.87313 0.92904 1.01668 1.21941 0.89429 0.99035 0.84255 0.86801 1.86695 1.85537 1.36644 1.26130 1.22163 0.92413 1.00865 1.03512 1.23270 0.82734 0.84958 0.77027 1.90779 1.81833 1.19713 1.46319 1.84543 1.23913 1.51234 1.73673 1.20257 0.96914 0.91683 0.95011 1.21335 1.00067 0.96860 1.02029 0.89997 0.88196 0.87750 0.75110 0.90558 0.89402 0.77694 0.86602 0.86134 0.73208 0.87912 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.33 10.95 55.55 0.61 -16.72 16 2 C 0.07 1.62 5.14 -17.34 -0.09 1.53 16 3 Si 0.92 16.49 29.60 -169.99 -5.03 11.45 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 5 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 6 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 7 C -0.43 -10.34 9.05 -37.74 -0.34 -10.69 16 8 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16 9 C 0.14 3.41 5.57 -106.83 -0.60 2.81 16 10 C -0.24 -5.50 9.80 -38.88 -0.38 -5.88 16 11 C 0.00 0.08 9.49 -39.66 -0.38 -0.30 16 12 C -0.79 -16.56 5.97 -39.29 -0.23 -16.79 16 13 S 2.69 49.78 5.73 -107.50 -0.62 49.16 16 14 O -0.98 -20.52 17.26 -57.17 -0.99 -21.51 16 15 O -0.99 -20.07 16.72 -57.17 -0.96 -21.03 16 16 N -1.12 -15.94 5.96 -10.61 -0.06 -16.00 16 17 C 0.09 1.06 5.86 -4.04 -0.02 1.04 16 18 C 0.11 1.17 2.61 -26.74 -0.07 1.10 16 19 H 0.11 1.25 7.96 -51.92 -0.41 0.84 16 20 O -0.55 -6.21 12.38 -49.66 -0.61 -6.83 16 21 C -0.15 -1.19 5.49 -27.89 -0.15 -1.34 16 22 C 0.48 4.63 8.21 36.01 0.30 4.93 16 23 O -0.50 -6.67 16.18 -24.05 -0.39 -7.06 16 24 O -0.52 -3.88 13.42 -39.27 -0.53 -4.40 16 25 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 16 26 C -0.18 -4.35 8.70 -38.88 -0.34 -4.69 16 27 H 0.29 5.84 8.30 -40.82 -0.34 5.50 16 28 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 29 H 0.10 2.07 7.60 -52.49 -0.40 1.67 16 30 H 0.41 5.40 8.51 -34.47 -0.29 5.10 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.99 7.75 -51.93 -0.40 0.58 16 33 H 0.38 3.13 9.04 45.56 0.41 3.54 16 34 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.12 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.41 1.45 9.10 45.56 0.41 1.86 16 37 H 0.10 2.04 7.59 -52.48 -0.40 1.64 16 38 H 0.12 2.95 6.16 -52.49 -0.32 2.62 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -33.31 347.31 -8.67 -41.98 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -2.64 Total: 14.78 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -2.68 Total: -29.06 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.55 Total: -32.72 kcal Atomic # 8 Polarization: -57.36 SS G_CDS: -3.47 Total: -60.83 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.45 kcal Atomic # 16 Polarization: 49.78 SS G_CDS: -0.62 Total: 49.16 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.31 -8.67 -41.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398331428.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.690 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds