Wall clock time and date at job start Tue Mar 31 2020 05:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86805 * 119.99930 * 2 1 4 4 H 1.48496 * 109.47028 * 269.99714 * 3 2 1 5 5 H 1.48499 * 109.47054 * 29.99820 * 3 2 1 6 6 H 1.48494 * 109.47180 * 149.99647 * 3 2 1 7 7 C 1.39943 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00370 * 197.84968 * 7 2 1 9 9 C 1.41395 * 119.99747 * 17.85407 * 7 2 1 10 10 C 1.40716 * 120.24313 * 204.38293 * 9 7 2 11 11 C 1.37623 * 119.74515 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24667 * 0.02562 * 11 10 9 13 13 S 1.76206 * 119.74789 * 179.97438 * 12 11 10 14 14 O 1.42102 * 106.40009 * 336.46383 * 13 12 11 15 15 O 1.42098 * 106.40185 * 203.54354 * 13 12 11 16 16 N 1.65597 * 107.21614 * 90.00408 * 13 12 11 17 17 C 1.46500 * 119.99989 * 65.00355 * 16 13 12 18 18 C 1.52994 * 109.47165 * 165.00068 * 17 16 13 19 19 H 1.09004 * 109.47582 * 59.99686 * 18 17 16 20 20 O 1.42902 * 109.46961 * 299.99472 * 18 17 16 21 21 C 1.53006 * 109.47294 * 179.97438 * 18 17 16 22 22 C 1.50699 * 109.47080 * 184.99673 * 21 18 17 23 23 O 1.20827 * 119.99959 * 359.97438 * 22 21 18 24 24 O 1.34229 * 119.99875 * 179.97438 * 22 21 18 25 25 C 1.38632 * 120.50341 * 0.26183 * 12 11 10 26 26 C 1.37624 * 120.24634 * 359.44112 * 25 12 11 27 27 H 0.97003 * 120.00236 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.13112 * 359.97438 * 10 9 7 29 29 H 1.08005 * 119.87565 * 180.02562 * 11 10 9 30 30 H 0.96999 * 120.00106 * 244.99776 * 16 13 12 31 31 H 1.08994 * 109.47092 * 44.99367 * 17 16 13 32 32 H 1.09003 * 109.46730 * 284.99765 * 17 16 13 33 33 H 0.96700 * 114.00161 * 300.00503 * 20 18 17 34 34 H 1.08997 * 109.46564 * 304.99769 * 21 18 17 35 35 H 1.08996 * 109.46998 * 64.99848 * 21 18 17 36 36 H 0.96702 * 116.99883 * 179.97438 * 24 22 21 37 37 H 1.08000 * 119.87577 * 179.70436 * 25 12 11 38 38 H 1.07997 * 120.12629 * 180.27815 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2872 9 6 1.3521 -2.4071 -0.3744 10 6 1.8258 -3.6498 0.0854 11 6 1.1799 -4.8068 -0.2863 12 6 0.0668 -4.7511 -1.1108 13 16 -0.7498 -6.2406 -1.5791 14 8 0.2110 -7.2804 -1.4566 15 8 -1.4384 -5.9573 -2.7894 16 7 -1.9125 -6.5415 -0.4390 17 6 -3.0421 -5.6216 -0.2843 18 6 -4.1393 -6.2956 0.5419 19 1 -3.7459 -6.5565 1.5245 20 8 -4.5780 -7.4806 -0.1255 21 6 -5.3188 -5.3346 0.7040 22 6 -6.3462 -5.9503 1.6186 23 8 -6.1549 -7.0454 2.0918 24 8 -7.4738 -5.2819 1.9076 25 6 -0.4052 -3.5328 -1.5746 26 6 0.2213 -2.3627 -1.2108 27 1 -0.4851 0.8401 -0.0004 28 1 2.6935 -3.6956 0.7268 29 1 1.5414 -5.7617 0.0657 30 1 -1.8456 -7.3269 0.1264 31 1 -3.4354 -5.3607 -1.2667 32 1 -2.7074 -4.7177 0.2248 33 1 -4.9410 -7.3235 -1.0079 34 1 -4.9666 -4.3963 1.1325 35 1 -5.7680 -5.1432 -0.2704 36 1 -8.1032 -5.7176 2.4985 37 1 -1.2703 -3.5016 -2.2203 38 1 -0.1507 -1.4145 -1.5695 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398331430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:39 Heat of formation + Delta-G solvation = -212.256102 kcal Electronic energy + Delta-G solvation = -25585.566572 eV Core-core repulsion = 21519.161264 eV Total energy + Delta-G solvation = -4066.405308 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52663 -38.07894 -37.61767 -36.50532 -36.21848 -35.15193 -34.24257 -34.07041 -31.67056 -30.30410 -29.51186 -26.90944 -25.86285 -22.85141 -21.58429 -21.27552 -21.17323 -18.86321 -18.31187 -17.66376 -17.50273 -17.16099 -16.67589 -16.46650 -15.97519 -15.58346 -15.31889 -15.24172 -14.28995 -14.13162 -13.97456 -13.44305 -13.27527 -13.24168 -13.01820 -12.46112 -12.33029 -12.23165 -11.83942 -11.70143 -11.56681 -11.49663 -11.40639 -11.31577 -11.24910 -11.18147 -10.94905 -10.78056 -10.43653 -10.30150 -9.81757 -9.69749 -9.55836 -9.08370 -8.01127 -7.75307 -7.19821 -4.85067 1.21722 2.01776 2.20355 2.74615 2.84773 2.86855 2.89587 2.89838 3.62645 3.67928 4.17612 4.22158 4.37365 4.47234 4.62591 4.77991 5.11314 5.17605 5.24480 5.27006 5.34388 5.60769 5.82993 6.01696 6.05227 6.10077 6.27935 6.63402 6.66436 6.86594 7.00245 7.26209 7.30418 7.38294 7.50202 7.58423 7.68105 7.72610 7.92358 8.27008 8.46729 8.60132 9.71642 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011689 B = 0.003488 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.740669 B = 8026.060152 C = 9847.077096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.435 4.435 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.239 4.239 11 C 0.003 3.997 12 C -0.789 4.789 13 S 2.696 3.304 14 O -0.984 6.984 15 O -0.986 6.986 16 N -1.120 6.120 17 C 0.090 3.910 18 C 0.114 3.886 19 H 0.115 0.885 20 O -0.544 6.544 21 C -0.151 4.151 22 C 0.479 3.521 23 O -0.500 6.500 24 O -0.521 6.521 25 C -0.018 4.018 26 C -0.182 4.182 27 H 0.289 0.711 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.414 0.586 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.373 0.627 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.409 0.591 37 H 0.103 0.897 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.089 -2.995 2.494 11.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.462 4.462 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.260 4.260 11 C -0.017 4.017 12 C -0.885 4.885 13 S 2.795 3.205 14 O -0.975 6.975 15 O -0.976 6.976 16 N -0.876 5.876 17 C -0.037 4.037 18 C 0.053 3.947 19 H 0.132 0.868 20 O -0.348 6.348 21 C -0.189 4.189 22 C 0.320 3.680 23 O -0.387 6.387 24 O -0.334 6.334 25 C -0.038 4.038 26 C -0.203 4.203 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.247 0.753 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.220 0.780 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.268 0.732 37 H 0.121 0.879 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.646 -3.642 2.069 11.440 hybrid contribution -0.162 1.221 0.709 1.421 sum -10.807 -2.421 2.778 11.418 Atomic orbital electron populations 1.69804 1.07916 1.30366 1.30790 1.26123 0.94905 1.02124 0.91752 0.86138 0.80534 0.79436 0.79829 1.18765 1.19854 1.18185 1.19968 0.98529 0.91176 1.36536 0.89410 1.17857 0.90054 0.92125 0.86406 1.21063 1.04439 0.92715 1.07749 1.20177 0.92131 0.97308 0.92113 1.29171 1.16607 1.15893 1.26815 1.01158 0.72295 0.74215 0.72860 1.93497 1.60464 1.56889 1.86662 1.93473 1.74503 1.86326 1.43274 1.55581 1.38123 1.35880 1.58035 1.21841 0.87355 0.93087 1.01456 1.21950 0.90369 0.84716 0.97631 0.86753 1.86705 1.83202 1.31206 1.33731 1.22158 0.94320 1.01950 1.00513 1.23264 0.81318 0.83538 0.79859 1.90780 1.77142 1.20650 1.50083 1.84541 1.31182 1.52343 1.65290 1.20256 0.96904 0.91682 0.95008 1.21338 1.00068 0.96858 1.02018 0.89988 0.88190 0.87748 0.75260 0.89956 0.90019 0.77972 0.85943 0.86780 0.73203 0.87912 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.39 10.95 55.55 0.61 -16.78 16 2 C 0.07 1.62 5.14 -17.34 -0.09 1.53 16 3 Si 0.92 16.52 29.60 -169.99 -5.03 11.49 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 6 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 7 C -0.43 -10.37 9.05 -37.74 -0.34 -10.71 16 8 H 0.09 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.14 3.42 5.57 -106.83 -0.60 2.82 16 10 C -0.24 -5.51 9.80 -38.87 -0.38 -5.89 16 11 C 0.00 0.06 9.49 -39.66 -0.38 -0.31 16 12 C -0.79 -16.61 5.97 -39.29 -0.23 -16.85 16 13 S 2.70 49.76 5.73 -107.50 -0.62 49.14 16 14 O -0.98 -20.54 17.26 -57.17 -0.99 -21.53 16 15 O -0.99 -19.98 16.72 -57.17 -0.96 -20.94 16 16 N -1.12 -15.87 5.86 -10.62 -0.06 -15.93 16 17 C 0.09 1.06 5.89 -4.04 -0.02 1.03 16 18 C 0.11 1.16 2.60 -26.73 -0.07 1.09 16 19 H 0.11 1.26 7.96 -51.93 -0.41 0.85 16 20 O -0.54 -6.14 12.44 -49.68 -0.62 -6.76 16 21 C -0.15 -1.19 5.50 -27.88 -0.15 -1.34 16 22 C 0.48 4.66 8.21 36.01 0.30 4.95 16 23 O -0.50 -6.69 16.18 -24.06 -0.39 -7.08 16 24 O -0.52 -3.91 13.42 -39.25 -0.53 -4.44 16 25 C -0.02 -0.40 9.49 -39.66 -0.38 -0.77 16 26 C -0.18 -4.36 8.70 -38.87 -0.34 -4.70 16 27 H 0.29 5.86 8.30 -40.82 -0.34 5.52 16 28 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.10 2.07 7.60 -52.48 -0.40 1.67 16 30 H 0.41 5.32 8.65 -34.47 -0.30 5.02 16 31 H 0.08 0.91 7.75 -51.93 -0.40 0.51 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.37 2.96 9.05 45.56 0.41 3.37 16 34 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.41 1.48 9.10 45.56 0.41 1.89 16 37 H 0.10 2.04 7.59 -52.49 -0.40 1.64 16 38 H 0.12 2.95 6.16 -52.49 -0.32 2.63 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -33.49 347.43 -8.67 -42.16 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -2.65 Total: 14.58 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: -2.68 Total: -29.15 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.55 Total: -32.71 kcal Atomic # 8 Polarization: -57.28 SS G_CDS: -3.48 Total: -60.75 kcal Atomic # 14 Polarization: 16.52 SS G_CDS: -5.03 Total: 11.49 kcal Atomic # 16 Polarization: 49.76 SS G_CDS: -0.62 Total: 49.14 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.49 -8.67 -42.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398331430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.091 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds