Wall clock time and date at job start Tue Mar 31 2020 05:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30844 * 125.89669 * 2 1 4 4 N 1.40085 * 108.22117 * 180.02562 * 3 2 1 5 5 C 1.46498 * 126.03394 * 180.02562 * 4 3 2 6 6 C 1.35010 * 107.92780 * 0.02562 * 4 3 2 7 7 C 1.50705 * 126.13562 * 179.97438 * 6 4 3 8 8 N 1.46898 * 109.47178 * 90.00101 * 7 6 4 9 9 C 1.47954 * 111.00194 * 189.99893 * 8 7 6 10 10 C 1.53931 * 86.18338 * 222.41764 * 9 8 7 11 11 O 1.42894 * 113.73376 * 269.25742 * 10 9 8 12 12 C 1.50699 * 113.73300 * 138.07740 * 10 9 8 13 13 H 1.08000 * 120.00120 * 17.14390 * 12 10 9 14 14 C 1.37882 * 120.00212 * 197.13752 * 12 10 9 15 15 N 1.31510 * 120.00059 * 194.51897 * 14 12 10 16 16 Si 1.86797 * 119.99395 * 14.51932 * 14 12 10 17 17 H 1.48508 * 109.46934 * 179.97438 * 16 14 12 18 18 H 1.48490 * 109.47503 * 299.99498 * 16 14 12 19 19 H 1.48504 * 109.47566 * 60.00249 * 16 14 12 20 20 C 1.48191 * 111.07000 * 90.56436 * 8 7 6 21 21 C 1.35369 * 107.73499 * 0.24333 * 6 4 3 22 22 Br 1.89097 * 126.04708 * 179.73606 * 21 6 4 23 23 H 1.09004 * 109.47516 * 89.96849 * 1 2 3 24 24 H 1.09000 * 109.47410 * 209.97277 * 1 2 3 25 25 H 1.09002 * 109.46789 * 329.96975 * 1 2 3 26 26 H 1.08999 * 109.46970 * 269.97141 * 5 4 3 27 27 H 1.08991 * 109.47482 * 29.97660 * 5 4 3 28 28 H 1.09002 * 109.47068 * 149.97610 * 5 4 3 29 29 H 1.09001 * 109.46798 * 329.99892 * 7 6 4 30 30 H 1.09003 * 109.47138 * 210.00017 * 7 6 4 31 31 H 1.08997 * 113.75806 * 108.09771 * 9 8 7 32 32 H 1.09001 * 113.86116 * 336.75272 * 9 8 7 33 33 H 0.96707 * 114.00278 * 174.10797 * 11 10 9 34 34 H 0.97003 * 120.00174 * 354.87093 * 15 14 12 35 35 H 1.09002 * 113.75990 * 23.24534 * 20 8 7 36 36 H 1.08999 * 113.83105 * 251.80860 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6089 0.6346 -0.0006 5 6 4.7897 1.5017 -0.0003 6 6 3.6148 -0.7155 -0.0015 7 6 4.8358 -1.5988 -0.0030 8 7 5.2335 -1.8868 1.3815 9 6 6.5564 -2.5478 1.4267 10 6 5.9437 -3.4717 2.4947 11 8 6.1119 -2.9960 3.8316 12 6 6.3254 -4.9207 2.3344 13 1 7.1705 -5.1916 1.7189 14 6 5.5959 -5.9006 2.9737 15 7 6.0792 -7.1195 3.0751 16 14 3.9211 -5.4967 3.6957 17 1 3.3463 -6.7136 4.3237 18 1 4.0675 -4.4324 4.7207 19 1 3.0176 -5.0236 2.6163 20 6 4.5776 -3.1191 1.8789 21 6 2.3273 -1.1335 -0.0070 22 35 1.7411 -2.9313 -0.0177 23 1 -0.3634 0.0006 -1.0277 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3633 0.8897 0.5143 26 1 5.0826 1.7170 -1.0278 27 1 4.5559 2.4339 0.5138 28 1 5.6093 0.9992 0.5134 29 1 5.6515 -1.0903 -0.5170 30 1 4.6082 -2.5325 -0.5173 31 1 7.3541 -1.9084 1.8045 32 1 6.8245 -3.0613 0.5033 33 1 5.6521 -3.5248 4.4981 34 1 6.9136 -7.3484 2.6367 35 1 4.2640 -3.7997 1.0873 36 1 3.7973 -2.9354 2.6174 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408449912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:43 Heat of formation + Delta-G solvation = 72.971413 kcal Electronic energy + Delta-G solvation = -20918.714062 eV Core-core repulsion = 17680.498506 eV Total energy + Delta-G solvation = -3238.215556 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.048 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.39070 -39.29511 -34.90081 -34.07502 -32.52394 -32.09388 -30.19422 -29.61897 -27.83363 -25.64950 -25.44779 -25.21384 -22.22797 -20.20109 -19.41984 -19.11813 -17.83919 -16.58797 -15.98874 -15.49383 -15.16404 -14.81185 -14.37358 -13.96263 -13.66539 -13.41966 -13.28387 -13.04309 -12.79918 -12.43809 -12.36402 -12.19768 -12.14184 -11.55382 -11.28307 -10.92052 -10.78575 -10.76492 -10.58858 -10.27530 -9.90966 -9.73998 -9.34606 -9.14917 -8.88114 -8.51406 -8.22308 -8.06635 -6.63483 -4.36960 1.71086 1.83012 2.51353 2.65743 3.20201 3.33843 3.45683 4.28236 4.34953 4.46267 4.64666 4.82061 4.98444 5.05649 5.10055 5.22580 5.35216 5.47849 5.51533 5.53260 5.59594 5.74693 5.76743 5.81088 5.96037 6.15246 6.34383 6.43424 6.52237 6.75098 6.89549 6.94203 7.53533 7.60533 7.70625 8.15399 8.65540 8.86460 9.37831 10.71887 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.006103 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.714663 B = 4586.984887 C = 5702.746559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.102 3.898 3 N -0.294 5.294 4 N -0.358 5.358 5 C 0.102 3.898 6 C 0.155 3.845 7 C 0.067 3.933 8 N -0.471 5.471 9 C 0.026 3.974 10 C 0.205 3.795 11 O -0.566 6.566 12 C -0.618 4.618 13 H 0.065 0.935 14 C 0.037 3.963 15 N -0.891 5.891 16 Si 1.036 2.964 17 H -0.282 1.282 18 H -0.280 1.280 19 H -0.267 1.267 20 C -0.028 4.028 21 C -0.243 4.243 22 Br -0.018 7.018 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.364 0.636 34 H 0.272 0.728 35 H 0.082 0.918 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.546 12.712 -8.549 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 N -0.117 5.117 4 N -0.139 5.139 5 C -0.039 4.039 6 C 0.023 3.977 7 C -0.063 4.063 8 N -0.194 5.194 9 C -0.102 4.102 10 C 0.164 3.836 11 O -0.374 6.374 12 C -0.656 4.656 13 H 0.083 0.917 14 C -0.170 4.170 15 N -0.525 5.525 16 Si 0.864 3.136 17 H -0.208 1.208 18 H -0.207 1.207 19 H -0.192 1.192 20 C -0.157 4.157 21 C -0.334 4.334 22 Br 0.065 6.935 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.213 0.787 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.564 13.899 -7.673 18.534 hybrid contribution 1.262 -0.885 -1.223 1.968 sum -8.303 13.013 -8.896 17.816 Atomic orbital electron populations 1.20245 0.86171 1.03729 1.03231 1.22141 0.97038 0.89004 0.98367 1.77337 0.86205 1.21839 1.26309 1.48246 1.05596 1.03917 1.56106 1.21921 0.84021 0.94836 1.03164 1.20776 0.95751 0.84567 0.96651 1.21409 0.92356 0.97541 0.94999 1.68600 1.05157 1.31532 1.14158 1.23938 0.92058 0.95455 0.98737 1.20292 0.89615 0.92923 0.80782 1.86339 1.76396 1.57724 1.16895 1.22283 1.17507 0.90016 1.35748 0.91726 1.25783 1.02927 0.93606 0.94689 1.70827 1.22255 1.21330 1.38048 0.84199 0.76256 0.75814 0.77350 1.20829 1.20692 1.19211 1.25223 1.00173 0.89698 1.00562 1.21428 0.93656 0.92401 1.25951 1.96625 1.89343 1.09179 1.98353 0.90212 0.89951 0.90601 0.90809 0.89135 0.88598 0.89898 0.90492 0.90126 0.90818 0.78720 0.91811 0.89985 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.27 36.00 0.37 -0.46 16 2 C 0.10 1.52 7.22 -82.38 -0.59 0.93 16 3 N -0.29 -4.60 12.57 33.68 0.42 -4.17 16 4 N -0.36 -5.28 4.01 -63.86 -0.26 -5.53 16 5 C 0.10 1.06 11.10 59.85 0.66 1.73 16 6 C 0.15 2.46 6.50 -82.22 -0.53 1.93 16 7 C 0.07 1.06 4.61 -4.97 -0.02 1.03 16 8 N -0.47 -8.87 6.14 -239.49 -1.47 -10.34 16 9 C 0.03 0.52 7.34 -2.77 -0.02 0.50 16 10 C 0.20 4.78 1.07 -90.84 -0.10 4.68 16 11 O -0.57 -13.63 13.47 -35.23 -0.47 -14.11 16 12 C -0.62 -16.51 9.04 -34.44 -0.31 -16.83 16 13 H 0.06 1.85 8.06 -52.49 -0.42 1.43 16 14 C 0.04 1.02 5.44 -17.82 -0.10 0.93 16 15 N -0.89 -26.09 13.70 55.43 0.76 -25.33 16 16 Si 1.04 23.86 24.54 -169.99 -4.17 19.69 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -5.96 5.81 56.52 0.33 -5.63 16 19 H -0.27 -5.76 6.49 56.52 0.37 -5.39 16 20 C -0.03 -0.59 4.13 -2.63 -0.01 -0.60 16 21 C -0.24 -3.90 6.52 -39.97 -0.26 -4.16 16 22 Br -0.02 -0.28 31.78 -68.01 -2.16 -2.44 16 23 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.10 0.98 7.66 -51.93 -0.40 0.58 16 29 H 0.08 1.09 7.67 -51.93 -0.40 0.70 16 30 H 0.08 1.25 7.00 -51.93 -0.36 0.88 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.07 1.38 7.88 -51.93 -0.41 0.97 16 33 H 0.36 8.34 6.08 45.56 0.28 8.61 16 34 H 0.27 7.91 8.73 -40.82 -0.36 7.55 16 35 H 0.08 1.76 6.67 -51.93 -0.35 1.41 16 36 H 0.07 1.55 6.86 -51.93 -0.36 1.20 16 LS Contribution 314.03 15.07 4.73 4.73 Total: -1.00 -31.19 314.03 -7.73 -38.92 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -4.20 Total: 8.90 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -0.91 Total: -10.31 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.54 Total: -45.38 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.47 Total: -14.11 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -4.17 Total: 19.69 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -2.16 Total: -2.44 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.19 -7.73 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408449912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.894 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds