Wall clock time and date at job start Tue Mar 31 2020 05:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46928 * 229.27073 * 3 2 1 5 5 C 1.33798 * 120.24261 * 90.02312 * 4 3 2 6 6 O 1.21627 * 126.55650 * 359.97438 * 5 4 3 7 7 S 1.77227 * 106.88710 * 179.97438 * 5 4 3 8 8 C 1.77486 * 94.56878 * 359.97438 * 7 5 4 9 9 C 1.35822 * 127.96372 * 179.97438 * 8 7 5 10 10 C 1.46703 * 119.99888 * 171.85438 * 9 8 7 11 11 C 1.40001 * 120.23200 * 315.34158 * 10 9 8 12 12 C 1.37737 * 119.88288 * 179.72083 * 11 10 9 13 13 C 1.38628 * 120.36305 * 0.57239 * 12 11 10 14 14 C 1.38082 * 120.46850 * 359.67862 * 13 12 11 15 15 C 1.38751 * 120.10558 * 0.04275 * 14 13 12 16 16 O 1.35515 * 120.17964 * 180.02562 * 15 14 13 17 17 C 1.34771 * 117.00292 * 5.58830 * 16 15 14 18 18 H 1.07999 * 120.00047 * 354.93960 * 17 16 15 19 19 C 1.38702 * 120.00078 * 174.93763 * 17 16 15 20 20 N 1.31516 * 120.00086 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99876 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47322 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47386 * 119.99784 * 21 19 17 24 24 H 1.48504 * 109.47107 * 239.99940 * 21 19 17 25 25 C 1.32266 * 120.23968 * 270.30213 * 4 3 2 26 26 O 1.21706 * 122.52343 * 0.06283 * 25 4 3 27 27 H 4.40637 * 5.51404 * 179.97438 * 4 1 2 28 28 H 1.08999 * 109.46808 * 109.27291 * 3 2 1 29 29 H 1.08999 * 109.46899 * 349.26912 * 3 2 1 30 30 H 1.07994 * 119.99929 * 351.58236 * 9 8 7 31 31 H 1.08009 * 120.05455 * 359.97438 * 11 10 9 32 32 H 1.08007 * 119.82172 * 180.27669 * 12 11 10 33 33 H 1.07995 * 119.77037 * 179.69549 * 13 12 11 34 34 H 1.07998 * 119.94868 * 180.02562 * 14 13 12 35 35 H 0.97003 * 120.00338 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1339 0.9021 1.0467 5 6 3.3592 0.4407 2.2822 6 8 3.2000 -0.7013 2.6693 7 16 3.9339 1.8119 3.2470 8 6 3.8433 2.9741 1.9087 9 6 4.1530 4.2965 1.9281 10 6 4.1848 5.0608 0.6763 11 6 4.8073 4.5283 -0.4591 12 6 4.8280 5.2497 -1.6323 13 6 4.2458 6.5063 -1.6925 14 6 3.6325 7.0479 -0.5803 15 6 3.5953 6.3358 0.6100 16 8 2.9932 6.8656 1.7023 17 6 2.3484 8.0375 1.5376 18 1 2.3967 8.5518 0.5892 19 6 1.6226 8.5831 2.5862 20 7 1.5642 7.9571 3.7413 21 14 0.7283 10.2070 2.3576 22 1 0.9507 10.7045 0.9762 23 1 -0.7257 10.0076 2.5843 24 1 1.2494 11.2003 3.3308 25 6 3.3497 2.1792 0.7785 26 8 3.1574 2.6579 -0.3238 27 1 -1.0501 0.0000 -0.0003 28 1 3.0092 0.3400 -0.9701 29 1 3.0098 -1.0089 0.1913 30 1 4.3714 4.7862 2.8655 31 1 5.2669 3.5518 -0.4162 32 1 5.3046 4.8360 -2.5088 33 1 4.2719 7.0657 -2.6160 34 1 3.1812 8.0275 -0.6367 35 1 1.0563 8.3384 4.4745 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408916741.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:50 Heat of formation + Delta-G solvation = 17.912688 kcal Electronic energy + Delta-G solvation = -24508.242576 eV Core-core repulsion = 20759.127055 eV Total energy + Delta-G solvation = -3749.115521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.055 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.85245 -40.94013 -40.01178 -38.24955 -37.16776 -35.39373 -34.43420 -34.27207 -31.21975 -30.67292 -29.34877 -27.38101 -26.25840 -25.06703 -23.31747 -22.84103 -20.97203 -19.95881 -19.90297 -19.72980 -18.84885 -18.17173 -17.67829 -16.90174 -16.89210 -16.54994 -16.30819 -16.00975 -15.63803 -15.55293 -15.29886 -15.12309 -15.04902 -14.57428 -14.42512 -14.13543 -13.59245 -13.33362 -12.93163 -12.68638 -12.51626 -12.42172 -12.20900 -12.11403 -11.99119 -11.55117 -11.44513 -11.37771 -11.26696 -11.08922 -10.83904 -9.93317 -9.24496 -8.79831 -8.51566 -6.17258 -0.84432 -0.43875 0.26323 0.36012 0.74925 0.88379 1.14149 1.37073 1.44472 1.54047 1.68007 1.69099 1.95914 2.14563 2.81823 2.91874 3.11156 3.26216 3.37258 3.80420 3.93125 4.01798 4.09782 4.22247 4.29789 4.44937 4.47556 4.64069 4.78797 4.84837 4.99729 5.12997 5.17513 5.36477 5.59082 5.59507 5.61607 5.72788 5.96010 6.15285 6.27743 6.44806 6.93458 7.66771 8.69878 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.003877 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.273210 B = 7219.849824 C = 7878.142579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.259 4.259 3 C 0.210 3.790 4 N -0.566 5.566 5 C 0.537 3.463 6 O -0.455 6.455 7 S -0.003 6.003 8 C -0.279 4.279 9 C 0.131 3.869 10 C -0.191 4.191 11 C -0.001 4.001 12 C -0.202 4.202 13 C -0.043 4.043 14 C -0.253 4.253 15 C 0.151 3.849 16 O -0.209 6.209 17 C -0.414 4.414 18 H 0.106 0.894 19 C -0.014 4.014 20 N -0.909 5.909 21 Si 1.014 2.986 22 H -0.250 1.250 23 H -0.272 1.272 24 H -0.268 1.268 25 C 0.561 3.439 26 O -0.472 6.472 27 H 0.252 0.748 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.130 0.870 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.127 0.873 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 -10.561 -8.194 13.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.260 4.260 3 C 0.088 3.912 4 N -0.310 5.310 5 C 0.219 3.781 6 O -0.330 6.330 7 S 0.235 5.765 8 C -0.394 4.394 9 C 0.106 3.894 10 C -0.195 4.195 11 C -0.019 4.019 12 C -0.220 4.220 13 C -0.061 4.061 14 C -0.273 4.273 15 C 0.098 3.902 16 O -0.114 6.114 17 C -0.490 4.490 18 H 0.123 0.877 19 C -0.213 4.213 20 N -0.545 5.545 21 Si 0.834 3.166 22 H -0.174 1.174 23 H -0.197 1.197 24 H -0.193 1.193 25 C 0.351 3.649 26 O -0.346 6.346 27 H 0.268 0.732 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.164 0.836 31 H 0.147 0.853 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.144 0.856 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.203 -10.963 -6.834 13.585 hybrid contribution -1.192 0.707 -0.824 1.612 sum 3.011 -10.256 -7.658 13.149 Atomic orbital electron populations 1.25907 0.96977 0.97380 0.96791 1.23492 0.95430 1.03350 1.03695 1.18851 0.84640 0.95686 0.91986 1.46395 1.60112 1.11545 1.12966 1.22204 0.79334 0.92366 0.84236 1.90887 1.51606 1.18055 1.72450 1.86156 1.77402 0.99410 1.13565 1.23258 1.20943 0.98963 0.96235 1.21891 0.80648 0.88809 0.98065 1.18095 1.12405 0.93448 0.95552 1.20995 0.93457 0.97145 0.90344 1.21022 1.06528 0.96058 0.98436 1.21365 0.92303 0.95082 0.97306 1.21258 1.09492 1.02604 0.93897 1.19896 0.91518 0.91170 0.87649 1.83825 1.60042 1.36876 1.30623 1.21893 1.29471 0.96268 1.01333 0.87695 1.26495 0.97312 1.03498 0.93989 1.70134 1.40323 1.40608 1.03442 0.84583 0.77395 0.75044 0.79618 1.17358 1.19731 1.19287 1.17610 0.77472 0.80909 0.88955 1.90926 1.48845 1.71152 1.23669 0.73170 0.84694 0.84283 0.83617 0.85254 0.83373 0.83302 0.85574 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 19.25 74.32 1.43 -2.04 16 2 C -0.26 -6.68 13.66 31.13 0.43 -6.25 16 3 C 0.21 4.80 5.74 84.58 0.49 5.29 16 4 N -0.57 -15.92 2.44 -785.34 -1.92 -17.83 16 5 C 0.54 15.60 8.39 129.94 1.09 16.69 16 6 O -0.45 -14.11 17.38 -4.12 -0.07 -14.18 16 7 S 0.00 -0.09 23.18 -56.49 -1.31 -1.40 16 8 C -0.28 -9.28 6.32 23.93 0.15 -9.13 16 9 C 0.13 4.84 9.39 23.92 0.22 5.06 16 10 C -0.19 -7.56 5.16 -20.06 -0.10 -7.67 16 11 C 0.00 -0.04 7.04 22.58 0.16 0.12 16 12 C -0.20 -6.02 10.02 22.24 0.22 -5.80 16 13 C -0.04 -1.35 10.03 22.33 0.22 -1.12 16 14 C -0.25 -10.19 9.16 22.36 0.20 -9.99 16 15 C 0.15 6.91 6.67 22.98 0.15 7.07 16 16 O -0.21 -11.43 9.21 -19.57 -0.18 -11.62 16 17 C -0.41 -22.35 9.49 67.93 0.64 -21.70 16 18 H 0.11 5.20 5.21 -2.91 -0.02 5.18 16 19 C -0.01 -0.72 5.49 84.85 0.47 -0.25 16 20 N -0.91 -52.28 13.67 21.62 0.30 -51.98 16 21 Si 1.01 40.43 29.55 68.60 2.03 42.46 16 22 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16 23 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 24 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 25 C 0.56 18.17 7.07 86.85 0.61 18.78 16 26 O -0.47 -16.83 13.08 -4.37 -0.06 -16.89 16 27 H 0.25 3.63 7.80 -4.41 -0.03 3.59 16 28 H 0.14 2.69 7.51 -2.39 -0.02 2.68 16 29 H 0.14 2.51 7.69 -2.39 -0.02 2.50 16 30 H 0.15 5.36 8.06 -2.91 -0.02 5.33 16 31 H 0.13 3.78 7.02 -2.91 -0.02 3.76 16 32 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.13 5.10 5.64 -2.91 -0.02 5.08 16 35 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -67.95 336.08 6.34 -61.61 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 1.16 Total: 20.78 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 6.39 Total: -10.95 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -1.62 Total: -69.81 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -0.31 Total: -42.69 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -1.31 Total: -1.40 kcal Total: -67.95 6.34 -61.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408916741.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.527 kcal (2) G-P(sol) polarization free energy of solvation -67.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds