Wall clock time and date at job start Tue Mar 31 2020 05:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99875 * 2 1 4 4 C 1.53005 * 109.47196 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46942 * 62.46343 * 4 3 2 6 6 C 1.36937 * 120.00124 * 275.66920 * 5 4 3 7 7 H 1.08001 * 120.00048 * 141.13551 * 6 5 4 8 8 C 1.38805 * 119.99718 * 321.13720 * 6 5 4 9 9 N 1.31623 * 120.00168 * 159.98659 * 8 6 5 10 10 Si 1.86800 * 120.00410 * 339.98683 * 8 6 5 11 11 H 1.48499 * 109.47224 * 95.21308 * 10 8 6 12 12 H 1.48498 * 109.47508 * 215.21930 * 10 8 6 13 13 H 1.48509 * 109.46675 * 335.21739 * 10 8 6 14 14 S 1.65598 * 119.99856 * 95.66771 * 5 4 3 15 15 O 1.42098 * 106.40413 * 336.45994 * 14 5 4 16 16 O 1.42106 * 106.40501 * 203.53815 * 14 5 4 17 17 C 1.76208 * 107.21731 * 90.00087 * 14 5 4 18 18 C 1.38254 * 119.92505 * 270.02110 * 17 14 5 19 19 C 1.38239 * 120.13716 * 179.75043 * 18 17 14 20 20 C 1.38545 * 120.03516 * 0.42481 * 19 18 17 21 21 C 1.39272 * 119.82062 * 359.57797 * 20 19 18 22 22 C 1.38228 * 119.92793 * 89.99613 * 17 14 5 23 23 O 1.36504 * 108.63802 * 180.24481 * 21 20 19 24 24 C 1.43985 * 105.48366 * 342.71931 * 23 21 20 25 25 O 1.36498 * 131.53819 * 179.87993 * 20 19 18 26 26 H 1.08993 * 109.46959 * 59.99970 * 1 2 3 27 27 H 1.09005 * 109.46482 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47157 * 299.99682 * 1 2 3 29 29 H 1.09000 * 109.47257 * 59.99714 * 3 2 1 30 30 H 1.09003 * 109.47070 * 299.99881 * 3 2 1 31 31 H 1.08993 * 109.46921 * 302.46545 * 4 3 2 32 32 H 1.08996 * 109.46807 * 182.45981 * 4 3 2 33 33 H 0.96995 * 120.00160 * 179.97438 * 9 8 6 34 34 H 1.07997 * 119.92822 * 359.97438 * 18 17 14 35 35 H 1.08003 * 119.98162 * 180.32937 * 19 18 17 36 36 H 1.08003 * 119.98980 * 0.03600 * 22 17 14 37 37 H 1.08995 * 110.57272 * 268.55120 * 24 23 21 38 38 H 1.09004 * 110.56955 * 145.67800 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9723 0.5094 -1.2238 6 6 3.9822 -0.8586 -1.2851 7 1 3.6820 -1.3607 -2.1929 8 6 4.3780 -1.5999 -0.1803 9 7 4.0294 -2.8649 -0.0773 10 14 5.4056 -0.8022 1.1604 11 1 4.5151 -0.3253 2.2489 12 1 6.3655 -1.7955 1.7055 13 1 6.1531 0.3485 0.5924 14 16 4.4542 1.4003 -2.5339 15 8 3.8387 2.6742 -2.4012 16 8 4.2795 0.5674 -3.6719 17 6 6.1887 1.6667 -2.3740 18 6 6.6563 2.7807 -1.7019 19 6 8.0161 2.9914 -1.5694 20 6 8.9141 2.0902 -2.1181 21 6 8.4429 0.9681 -2.7951 22 6 7.0788 0.7612 -2.9204 23 8 9.5125 0.2414 -3.2324 24 6 10.6372 1.1383 -3.1719 25 8 10.2789 2.0666 -2.1313 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8537 0.6063 0.8679 32 1 3.9786 2.1795 0.0448 33 1 4.3063 -3.3830 0.6946 34 1 5.9578 3.4859 -1.2764 35 1 8.3786 3.8597 -1.0393 36 1 6.7107 -0.1081 -3.4451 37 1 10.7642 1.6579 -4.1216 38 1 11.5451 0.5968 -2.9061 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414453084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:28 Heat of formation + Delta-G solvation = -148.946957 kcal Electronic energy + Delta-G solvation = -27262.012936 eV Core-core repulsion = 23198.352918 eV Total energy + Delta-G solvation = -4063.660018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.28967 -39.05517 -38.90972 -37.88689 -37.44310 -37.15118 -36.48184 -34.00790 -31.87112 -31.20864 -30.60476 -27.20325 -26.92149 -26.03317 -24.35589 -24.15898 -23.76541 -20.48216 -19.62961 -19.07785 -18.79498 -18.48610 -18.29249 -17.80036 -17.55883 -16.91361 -16.57172 -16.19894 -16.05404 -15.74650 -15.61178 -15.08518 -15.00845 -14.78901 -14.61634 -14.24412 -14.12283 -14.02959 -13.83378 -13.64915 -13.07711 -12.85463 -12.82784 -12.68245 -12.52468 -12.39494 -12.27792 -12.13650 -11.89817 -11.76822 -11.58717 -10.82741 -10.32548 -10.15864 -9.96477 -9.38255 -8.48501 -5.99903 -0.47449 -0.15658 0.04255 1.27744 1.41117 1.46531 1.58366 2.13909 2.23800 2.36540 2.47631 2.91307 3.08958 3.16427 3.26485 3.59784 3.72290 3.89796 4.06271 4.09159 4.14466 4.17366 4.24469 4.40907 4.45077 4.54250 4.64907 4.66166 4.68012 4.83275 4.93130 4.95835 4.97027 5.03006 5.22253 5.26741 5.63092 5.94712 6.28013 6.57395 7.00828 7.08049 8.62928 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.005212 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.927093 B = 5370.482414 C = 6000.859720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.048 3.952 4 C 0.103 3.897 5 N -0.829 5.829 6 C -0.247 4.247 7 H 0.076 0.924 8 C 0.043 3.957 9 N -0.869 5.869 10 Si 0.917 3.083 11 H -0.244 1.244 12 H -0.294 1.294 13 H -0.243 1.243 14 S 2.574 3.426 15 O -0.995 6.995 16 O -1.005 7.005 17 C -0.668 4.668 18 C -0.023 4.023 19 C -0.117 4.117 20 C 0.066 3.934 21 C -0.008 4.008 22 C -0.025 4.025 23 O -0.326 6.326 24 C 0.201 3.799 25 O -0.311 6.311 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.282 0.718 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.132 0.868 37 H 0.110 0.890 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.133 11.515 2.636 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.030 4.030 4 C -0.022 4.022 5 N -0.655 5.655 6 C -0.393 4.393 7 H 0.094 0.906 8 C -0.169 4.169 9 N -0.507 5.507 10 Si 0.742 3.258 11 H -0.170 1.170 12 H -0.221 1.221 13 H -0.166 1.166 14 S 2.676 3.324 15 O -0.985 6.985 16 O -0.995 6.995 17 C -0.750 4.750 18 C -0.042 4.042 19 C -0.136 4.136 20 C 0.020 3.980 21 C -0.053 4.053 22 C -0.044 4.044 23 O -0.243 6.243 24 C 0.091 3.909 25 O -0.227 6.227 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.092 0.908 34 H 0.192 0.808 35 H 0.197 0.803 36 H 0.149 0.851 37 H 0.128 0.872 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 7.008 11.622 1.950 13.711 hybrid contribution 1.089 -0.446 0.354 1.229 sum 8.098 11.176 2.304 13.992 Atomic orbital electron populations 1.22842 0.81099 1.02795 1.00372 1.88206 1.19979 1.27583 1.95336 1.23012 0.93330 0.85295 1.01399 1.21881 0.94560 0.97986 0.87776 1.53522 1.67952 1.13752 1.30224 1.18644 1.39642 0.79059 1.01919 0.90643 1.26147 0.95483 0.95137 1.00140 1.69887 1.40548 1.09552 1.30730 0.86270 0.79505 0.79692 0.80368 1.16984 1.22131 1.16648 1.08875 0.74564 0.72636 0.76292 1.93355 1.75593 1.42440 1.87137 1.93365 1.86129 1.68395 1.51647 1.31792 1.28725 1.03433 1.11023 1.21082 0.95677 0.94298 0.93163 1.20573 0.90422 0.99729 1.02855 1.20222 0.83634 0.95706 0.98419 1.19949 0.90027 0.92820 1.02509 1.19764 0.88586 0.98901 0.97189 1.87360 1.16483 1.36705 1.83723 1.26274 0.90602 0.82500 0.91555 1.87326 1.16487 1.63215 1.55667 0.94172 0.90136 0.92399 0.89503 0.93230 0.91738 0.86326 0.90803 0.80787 0.80336 0.85056 0.87231 0.81432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.02 16 2 O -0.39 -15.97 9.80 -148.98 -1.46 -17.43 16 3 C 0.05 1.68 6.29 71.98 0.45 2.13 16 4 C 0.10 3.87 4.79 86.38 0.41 4.28 16 5 N -0.83 -37.45 2.45 -343.46 -0.84 -38.30 16 6 C -0.25 -13.01 8.67 84.03 0.73 -12.28 16 7 H 0.08 4.56 7.65 -2.91 -0.02 4.54 16 8 C 0.04 2.20 5.36 84.86 0.45 2.66 16 9 N -0.87 -47.90 13.97 21.65 0.30 -47.60 16 10 Si 0.92 39.12 24.94 68.60 1.71 40.83 16 11 H -0.24 -9.46 6.71 99.48 0.67 -8.79 16 12 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.24 -9.72 7.11 99.48 0.71 -9.01 16 14 S 2.57 113.71 5.60 -56.49 -0.32 113.40 16 15 O -1.00 -42.13 16.23 -128.00 -2.08 -44.21 16 16 O -1.01 -52.25 16.23 -128.00 -2.08 -54.33 16 17 C -0.67 -26.03 5.97 22.27 0.13 -25.90 16 18 C -0.02 -0.72 9.51 22.27 0.21 -0.51 16 19 C -0.12 -3.19 10.06 22.34 0.22 -2.96 16 20 C 0.07 2.02 7.15 22.59 0.16 2.18 16 21 C -0.01 -0.30 7.15 22.59 0.16 -0.13 16 22 C -0.02 -0.99 9.53 22.34 0.21 -0.78 16 23 O -0.33 -10.34 11.40 -76.10 -0.87 -11.21 16 24 C 0.20 4.15 8.89 113.37 1.01 5.16 16 25 O -0.31 -8.11 11.40 -76.03 -0.87 -8.98 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 2.48 3.01 -2.39 -0.01 2.47 16 32 H 0.12 3.50 7.59 -2.39 -0.02 3.48 16 33 H 0.28 14.37 8.31 -92.71 -0.77 13.59 16 34 H 0.17 4.37 7.61 -2.91 -0.02 4.35 16 35 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 36 H 0.13 5.65 7.61 -2.91 -0.02 5.63 16 37 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.17 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -71.81 334.16 -0.02 -71.83 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 1.06 Total: 20.10 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 5.41 Total: -24.12 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -0.54 Total: -85.89 kcal Atomic # 8 Polarization: -128.80 SS G_CDS: -7.35 Total: -136.15 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 1.71 Total: 40.83 kcal Atomic # 16 Polarization: 113.71 SS G_CDS: -0.32 Total: 113.40 kcal Total: -71.81 -0.02 -71.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414453084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.113 kcal (2) G-P(sol) polarization free energy of solvation -71.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds