Wall clock time and date at job start Tue Mar 31 2020 05:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42895 * 114.00340 * 2 1 4 4 C 1.53002 * 109.47571 * 183.26187 * 3 2 1 5 5 N 1.46498 * 109.46686 * 61.12963 * 4 3 2 6 6 C 1.36938 * 120.00130 * 67.36407 * 5 4 3 7 7 H 1.08000 * 119.99809 * 334.20663 * 6 5 4 8 8 C 1.38814 * 120.00149 * 154.20272 * 6 5 4 9 9 N 1.31618 * 119.99928 * 347.26579 * 8 6 5 10 10 Si 1.86803 * 119.99835 * 167.26537 * 8 6 5 11 11 H 1.48498 * 109.46835 * 60.00216 * 10 8 6 12 12 H 1.48497 * 109.46955 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47212 * 300.00142 * 10 8 6 14 14 S 1.65605 * 120.00215 * 247.35737 * 5 4 3 15 15 O 1.42092 * 106.40379 * 249.25111 * 14 5 4 16 16 O 1.42104 * 106.39841 * 22.17625 * 14 5 4 17 17 C 1.76208 * 107.21469 * 135.71135 * 14 5 4 18 18 C 1.38273 * 119.98414 * 111.00306 * 17 14 5 19 19 C 1.38213 * 120.14277 * 179.67625 * 18 17 14 20 20 C 1.38275 * 120.14371 * 0.65561 * 19 18 17 21 21 C 1.38503 * 120.02788 * 359.62954 * 20 19 18 22 22 C 1.38504 * 119.98492 * 291.27425 * 17 14 5 23 23 O 1.36495 * 131.54395 * 0.03045 * 22 17 14 24 24 C 1.43981 * 105.48993 * 162.67549 * 23 22 17 25 25 O 1.36498 * 131.54156 * 180.02562 * 21 20 19 26 26 H 1.09003 * 109.46745 * 289.54660 * 1 2 3 27 27 H 1.08997 * 109.47101 * 49.54239 * 1 2 3 28 28 H 1.08997 * 109.47395 * 169.54760 * 1 2 3 29 29 H 1.09000 * 109.46948 * 63.26457 * 3 2 1 30 30 H 1.08992 * 109.47366 * 303.26447 * 3 2 1 31 31 H 1.09004 * 109.47099 * 301.13632 * 4 3 2 32 32 H 1.08993 * 109.47423 * 181.13301 * 4 3 2 33 33 H 0.97007 * 119.99760 * 185.81359 * 9 8 6 34 34 H 1.08004 * 119.92775 * 0.02562 * 18 17 14 35 35 H 1.08001 * 119.92581 * 180.28673 * 19 18 17 36 36 H 1.07999 * 119.99025 * 179.65341 * 20 19 18 37 37 H 1.09000 * 110.57131 * 268.55778 * 24 23 22 38 38 H 1.09001 * 110.69863 * 145.75092 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5333 1.1855 -0.0821 5 7 3.9035 0.5106 -1.3285 6 6 3.6840 1.1263 -2.5318 7 1 2.9038 1.8673 -2.6249 8 6 4.4644 0.7982 -3.6320 9 7 5.5646 0.0938 -3.4718 10 14 3.9529 1.3563 -5.3397 11 1 3.8865 2.8393 -5.3765 12 1 4.9472 0.8799 -6.3346 13 1 2.6182 0.7927 -5.6657 14 16 4.5875 -0.9968 -1.2824 15 8 5.9379 -0.8376 -1.6950 16 8 4.2181 -1.5670 -0.0342 17 6 3.7986 -1.9657 -2.5249 18 6 4.5036 -2.3553 -3.6487 19 6 3.8900 -3.1210 -4.6222 20 6 2.5645 -3.4893 -4.4829 21 6 1.8504 -3.0977 -3.3626 22 6 2.4710 -2.3320 -2.3780 23 8 1.5661 -2.0782 -1.3880 24 6 0.2761 -2.3479 -1.9678 25 8 0.5571 -3.3234 -2.9890 26 1 -0.3633 0.3438 0.9685 27 1 -0.3633 0.6668 -0.7819 28 1 -0.3634 -1.0106 -0.1864 29 1 1.7357 1.8253 0.9178 30 1 1.6431 1.8666 -0.8592 31 1 3.8985 0.6071 0.7666 32 1 3.9777 2.1806 -0.0618 33 1 6.1537 -0.0639 -4.2262 34 1 5.5377 -2.0655 -3.7635 35 1 4.4454 -3.4272 -5.4964 36 1 2.0859 -4.0828 -5.2477 37 1 -0.1429 -1.4429 -2.4077 38 1 -0.4033 -2.7596 -1.2215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414464499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:32 Heat of formation + Delta-G solvation = -94.010517 kcal Electronic energy + Delta-G solvation = -29187.645519 eV Core-core repulsion = 25126.367724 eV Total energy + Delta-G solvation = -4061.277795 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58712 -37.47199 -37.17160 -35.75378 -35.46745 -35.05262 -33.81920 -31.99919 -30.01696 -29.36136 -28.60529 -26.08014 -25.18123 -24.54091 -22.64043 -22.28339 -21.34277 -18.94772 -17.93894 -17.41972 -17.02662 -16.22210 -16.16555 -15.90641 -15.51806 -14.97964 -14.76783 -14.67179 -14.33039 -13.93343 -13.84388 -13.56767 -13.33298 -12.81479 -12.43648 -12.34587 -12.19191 -12.12925 -11.77310 -11.74709 -11.29049 -11.14416 -11.10080 -11.03586 -10.54604 -10.46233 -10.41107 -10.12340 -10.03709 -9.45387 -9.35272 -9.10941 -8.97285 -8.42247 -7.82682 -7.44345 -5.93642 -3.91736 1.53511 1.82143 2.30062 3.17883 3.23843 3.24283 3.25210 3.90675 4.05113 4.16561 4.42029 4.78248 4.90868 5.03333 5.12134 5.17048 5.35630 5.50863 5.56708 5.59339 5.61937 5.79456 5.84242 5.88259 5.94231 6.00031 6.09126 6.30326 6.35583 6.51857 6.54283 6.70338 6.90189 7.01935 7.12119 7.27770 7.54303 7.69984 7.80336 8.29942 8.92641 9.35580 10.65699 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.010626 B = 0.009706 C = 0.007356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.515982 B = 2884.117777 C = 3805.511213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.044 3.956 4 C 0.135 3.865 5 N -0.839 5.839 6 C -0.260 4.260 7 H 0.083 0.917 8 C -0.004 4.004 9 N -0.807 5.807 10 Si 0.912 3.088 11 H -0.274 1.274 12 H -0.279 1.279 13 H -0.276 1.276 14 S 2.629 3.371 15 O -0.910 6.910 16 O -1.023 7.023 17 C -0.601 4.601 18 C 0.007 3.993 19 C -0.162 4.162 20 C -0.068 4.068 21 C -0.019 4.019 22 C 0.136 3.864 23 O -0.264 6.264 24 C 0.206 3.794 25 O -0.319 6.319 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.275 0.725 34 H 0.164 0.836 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.076 0.924 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.007 -0.926 -0.099 8.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C -0.035 4.035 4 C 0.007 3.993 5 N -0.667 5.667 6 C -0.400 4.400 7 H 0.100 0.900 8 C -0.211 4.211 9 N -0.452 5.452 10 Si 0.739 3.261 11 H -0.200 1.200 12 H -0.204 1.204 13 H -0.202 1.202 14 S 2.722 3.278 15 O -0.898 6.898 16 O -1.012 7.012 17 C -0.681 4.681 18 C -0.012 4.012 19 C -0.181 4.181 20 C -0.087 4.087 21 C -0.064 4.064 22 C 0.090 3.910 23 O -0.177 6.177 24 C 0.094 3.906 25 O -0.236 6.236 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.181 0.819 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.262 -1.738 0.582 7.489 hybrid contribution -1.490 0.510 -1.556 2.214 sum -8.752 -1.228 -0.975 8.891 Atomic orbital electron populations 1.22702 0.83728 1.01203 0.99003 1.88206 1.17150 1.26697 1.94958 1.23055 0.96364 0.85273 0.98838 1.21083 0.92016 0.98517 0.87675 1.53164 1.78654 1.26560 1.08323 1.19013 1.14866 1.21023 0.85049 0.89957 1.25739 0.95663 0.99437 1.00221 1.70884 1.08316 1.35411 1.30571 0.86175 0.78519 0.78944 0.82496 1.19989 1.20442 1.20151 1.06146 0.77108 0.72671 0.71889 1.93651 1.32698 1.83414 1.80033 1.93390 1.84959 1.78474 1.44400 1.30468 1.00866 1.17672 1.19121 1.21131 1.01219 0.89546 0.89321 1.20964 0.93871 1.02396 1.00866 1.20034 0.94039 1.00690 0.93969 1.19768 0.84893 1.03729 0.97965 1.19183 0.91623 0.94339 0.85896 1.87711 1.14204 1.83892 1.31931 1.25616 0.87676 0.90682 0.86645 1.87259 1.26490 1.54693 1.55142 0.95051 0.94813 0.91041 0.94307 0.93107 0.90550 0.90136 0.91245 0.81910 0.85119 0.85698 0.90623 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.05 101.05 1.02 1.46 16 2 O -0.35 -6.75 8.30 -57.12 -0.47 -7.22 16 3 C 0.04 0.77 6.05 37.16 0.22 0.99 16 4 C 0.13 2.73 6.07 -4.04 -0.02 2.70 16 5 N -0.84 -20.08 2.92 -59.91 -0.17 -20.25 16 6 C -0.26 -6.28 9.00 -15.06 -0.14 -6.42 16 7 H 0.08 1.88 7.14 -52.49 -0.37 1.50 16 8 C 0.00 -0.10 4.22 -17.43 -0.07 -0.17 16 9 N -0.81 -20.63 5.84 55.49 0.32 -20.30 16 10 Si 0.91 19.43 29.58 -169.99 -5.03 14.40 16 11 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 14 S 2.63 67.76 4.94 -107.50 -0.53 67.23 16 15 O -0.91 -25.26 13.41 -57.17 -0.77 -26.03 16 16 O -1.02 -27.87 16.41 -57.17 -0.94 -28.81 16 17 C -0.60 -14.34 4.63 -39.47 -0.18 -14.53 16 18 C 0.01 0.15 7.96 -39.58 -0.32 -0.16 16 19 C -0.16 -2.96 10.04 -39.58 -0.40 -3.36 16 20 C -0.07 -1.23 10.06 -39.47 -0.40 -1.63 16 21 C -0.02 -0.39 7.15 -39.08 -0.28 -0.67 16 22 C 0.14 3.08 6.74 -39.08 -0.26 2.82 16 23 O -0.26 -5.55 8.39 -53.18 -0.45 -6.00 16 24 C 0.21 3.33 6.70 101.05 0.68 4.01 16 25 O -0.32 -5.82 11.40 -45.68 -0.52 -6.34 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.44 8.05 -51.93 -0.42 0.02 16 28 H 0.07 0.92 5.42 -51.93 -0.28 0.64 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.88 7.24 -51.93 -0.38 0.50 16 31 H 0.08 1.58 7.02 -51.93 -0.36 1.21 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.27 6.68 8.09 -40.82 -0.33 6.35 16 34 H 0.16 3.60 5.89 -52.48 -0.31 3.29 16 35 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 36 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.08 1.10 7.98 -51.93 -0.41 0.69 16 38 H 0.12 1.48 7.59 -51.93 -0.39 1.09 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -32.46 316.14 -8.11 -40.58 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.17 Total: 2.95 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -0.15 Total: -14.96 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.15 Total: -40.56 kcal Atomic # 8 Polarization: -71.26 SS G_CDS: -3.15 Total: -74.40 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Atomic # 16 Polarization: 67.76 SS G_CDS: -0.53 Total: 67.23 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.46 -8.11 -40.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414464499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.433 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds