Wall clock time and date at job start Tue Mar 31 2020 04:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47114 * 2 1 4 4 C 1.42900 * 113.99968 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46930 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.46948 * 65.00132 * 5 4 3 7 7 C 1.42901 * 113.99852 * 180.02562 * 6 5 4 8 8 H 1.09007 * 110.64054 * 328.30293 * 7 6 5 9 9 C 1.54597 * 110.72459 * 91.45230 * 7 6 5 10 10 C 1.53987 * 105.13649 * 140.31791 * 9 7 6 11 11 N 1.47906 * 107.06407 * 1.22321 * 10 9 7 12 12 C 1.46897 * 111.00224 * 214.15940 * 11 10 9 13 13 C 1.50702 * 109.47126 * 176.63782 * 12 11 10 14 14 O 1.21290 * 119.99507 * 6.11118 * 13 12 11 15 15 N 1.34769 * 120.00124 * 186.11264 * 13 12 11 16 16 C 1.46496 * 119.99892 * 0.02562 * 15 13 12 17 17 C 1.53001 * 109.47409 * 90.00146 * 16 15 13 18 18 C 1.46504 * 120.00145 * 179.97438 * 15 13 12 19 19 C 1.50699 * 109.47023 * 89.99768 * 18 15 13 20 20 H 1.08006 * 119.99867 * 0.02562 * 19 18 15 21 21 C 1.37882 * 120.00019 * 179.97438 * 19 18 15 22 22 N 1.31510 * 119.99855 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99716 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47491 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47054 * 120.00544 * 23 21 19 26 26 H 1.48513 * 109.46866 * 239.99926 * 23 21 19 27 27 C 1.48533 * 105.81407 * 334.67265 * 11 10 9 28 28 H 1.08998 * 109.47283 * 60.00449 * 1 2 3 29 29 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47407 * 299.99846 * 1 2 3 31 31 H 1.09001 * 109.47620 * 239.99735 * 2 1 3 32 32 H 1.09004 * 109.47476 * 119.99933 * 2 1 3 33 33 H 1.09004 * 109.47296 * 59.99840 * 4 3 2 34 34 H 1.08994 * 109.47253 * 299.99753 * 4 3 2 35 35 H 1.08997 * 109.46859 * 304.99793 * 5 4 3 36 36 H 1.09003 * 109.46933 * 185.00073 * 5 4 3 37 37 H 1.08997 * 110.30868 * 21.40130 * 9 7 6 38 38 H 1.09002 * 110.39070 * 259.27258 * 9 7 6 39 39 H 1.09008 * 109.91721 * 241.87052 * 10 9 7 40 40 H 1.09003 * 110.08594 * 120.67193 * 10 9 7 41 41 H 1.09001 * 109.46982 * 56.63672 * 12 11 10 42 42 H 1.08997 * 109.46977 * 296.63498 * 12 11 10 43 43 H 1.09010 * 109.47139 * 210.00070 * 16 15 13 44 44 H 1.09001 * 109.47432 * 329.99635 * 16 15 13 45 45 H 1.08997 * 109.46676 * 299.99766 * 17 16 15 46 46 H 1.08994 * 109.47215 * 59.99756 * 17 16 15 47 47 H 1.08994 * 109.47249 * 179.97438 * 17 16 15 48 48 H 1.08994 * 109.47053 * 210.00092 * 18 15 13 49 49 H 1.09004 * 109.46951 * 330.00297 * 18 15 13 50 50 H 0.96995 * 119.99831 * 179.97438 * 22 21 19 51 51 H 1.09007 * 110.66599 * 157.63710 * 27 11 10 52 52 H 1.08997 * 110.67116 * 280.76939 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 8 3.3974 3.5461 1.2204 7 6 3.7181 4.9350 1.3217 8 1 4.6448 5.1551 0.7916 9 6 2.5594 5.8048 0.7822 10 6 2.4722 7.0018 1.7470 11 7 3.5430 6.8278 2.7523 12 6 3.1198 7.3332 4.0651 13 6 4.2017 7.0648 5.0793 14 8 5.2676 6.6090 4.7227 15 7 3.9848 7.3312 6.3825 16 6 2.6971 7.8813 6.8132 17 6 1.7409 6.7359 7.1520 18 6 5.0363 7.0698 7.3685 19 6 5.8983 8.2964 7.5209 20 1 5.6840 9.1824 6.9415 21 6 6.9598 8.2881 8.4008 22 7 7.2204 7.2095 9.1066 23 14 8.0278 9.8089 8.5901 24 1 7.5287 10.8795 7.6902 25 1 7.9740 10.2795 9.9975 26 1 9.4304 9.4764 8.2327 27 6 3.8146 5.3685 2.8060 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8340 0.9764 -0.8892 34 1 3.8332 0.9768 0.8908 35 1 3.3499 3.4409 -0.8425 36 1 4.9082 3.0255 -0.0893 37 1 1.6265 5.2412 0.7932 38 1 2.7812 6.1486 -0.2281 39 1 1.4994 7.0123 2.2387 40 1 2.6225 7.9337 1.2018 41 1 2.2027 6.8292 4.3700 42 1 2.9405 8.4064 4.0006 43 1 2.8449 8.5042 7.6955 44 1 2.2724 8.4837 6.0102 45 1 1.5931 6.1131 6.2697 46 1 2.1655 6.1336 7.9550 47 1 0.7830 7.1452 7.4728 48 1 4.5815 6.8237 8.3280 49 1 5.6500 6.2340 7.0323 50 1 7.9674 7.2035 9.7253 51 1 4.8135 5.1773 3.1984 52 1 3.0606 4.8586 3.4055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441654495.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:19 Heat of formation + Delta-G solvation = -118.447636 kcal Electronic energy + Delta-G solvation = -28882.110653 eV Core-core repulsion = 24882.238259 eV Total energy + Delta-G solvation = -3999.872393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.78386 -38.79005 -38.11541 -36.62773 -35.16865 -32.83003 -32.25397 -31.33730 -30.05462 -29.49566 -28.24032 -27.51786 -25.60265 -23.08111 -22.99558 -22.84000 -22.47428 -21.08369 -20.83035 -18.31628 -17.32203 -17.12822 -16.67405 -16.34641 -16.13492 -15.75172 -15.46585 -15.24143 -14.84425 -14.50463 -14.44029 -13.95178 -13.83580 -13.44905 -13.38832 -13.22239 -12.91742 -12.80294 -12.64187 -12.45665 -12.09169 -11.93701 -11.83250 -11.64822 -11.62163 -11.52904 -11.45839 -11.18878 -11.15883 -11.00896 -10.85663 -10.69288 -10.54039 -10.49540 -10.08655 -9.88492 -9.60782 -9.54479 -8.80158 -8.40215 -8.25858 -7.59307 -6.00661 -4.04822 3.32352 3.34416 3.39589 3.40150 3.43370 3.50171 3.81456 4.36272 4.49510 4.60132 4.69647 4.71246 4.75891 4.91914 4.97377 4.98313 5.04532 5.09480 5.13837 5.18462 5.22908 5.33202 5.34624 5.39958 5.42340 5.50407 5.58911 5.61420 5.63381 5.66596 5.70087 5.79746 5.80871 5.82219 5.93486 5.99294 6.05616 6.25154 6.36006 6.50127 6.86156 6.93312 6.94027 7.17011 7.23848 7.49422 7.61280 7.96605 8.28197 8.48370 8.95667 9.17737 9.60244 11.07432 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.015883 B = 0.002321 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.448950 B =12059.285681 C =12184.542865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.064 3.936 6 O -0.369 6.369 7 C 0.084 3.916 8 H 0.076 0.924 9 C -0.152 4.152 10 C 0.037 3.963 11 N -0.496 5.496 12 C 0.029 3.971 13 C 0.506 3.494 14 O -0.525 6.525 15 N -0.599 5.599 16 C 0.107 3.893 17 C -0.169 4.169 18 C 0.248 3.752 19 C -0.523 4.523 20 H 0.058 0.942 21 C 0.059 3.941 22 N -0.896 5.896 23 Si 0.898 3.102 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.283 1.283 27 C 0.044 3.956 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.031 0.969 49 H 0.043 0.957 50 H 0.262 0.738 51 H 0.111 0.889 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.757 -9.351 -18.247 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.301 6.301 4 C -0.012 4.012 5 C -0.013 4.013 6 O -0.288 6.288 7 C 0.026 3.974 8 H 0.094 0.906 9 C -0.191 4.191 10 C -0.091 4.091 11 N -0.221 5.221 12 C -0.102 4.102 13 C 0.292 3.708 14 O -0.401 6.401 15 N -0.332 5.332 16 C -0.018 4.018 17 C -0.227 4.227 18 C 0.128 3.872 19 C -0.562 4.562 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.535 5.535 23 Si 0.726 3.274 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.209 1.209 27 C -0.084 4.084 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.049 0.951 49 H 0.061 0.939 50 H 0.072 0.928 51 H 0.129 0.871 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.808 -9.315 -18.271 24.724 hybrid contribution 0.084 0.384 0.294 0.491 sum -13.725 -8.931 -17.977 24.316 Atomic orbital electron populations 1.21730 0.93757 1.02125 1.03217 1.22455 0.95704 0.83977 0.99919 1.87966 1.20635 1.26105 1.95383 1.22530 0.82072 0.95800 1.00842 1.22530 0.98361 0.92322 0.88058 1.87974 1.80587 1.22639 1.37558 1.23039 0.96665 0.80482 0.97234 0.90554 1.22908 1.00160 0.96713 0.99289 1.22846 0.93492 0.98836 0.93923 1.64542 1.37223 1.14846 1.05472 1.22314 0.96481 1.02053 0.89361 1.20082 0.88407 0.79338 0.82977 1.90637 1.26192 1.44340 1.78940 1.48250 1.15182 1.62473 1.07293 1.21399 0.84101 0.95420 1.00836 1.22225 0.99076 0.99581 1.01864 1.19248 0.84736 0.97477 0.85696 1.21486 1.12746 0.99112 1.22826 0.92411 1.24942 0.97233 0.96411 0.95637 1.69943 1.29699 1.27643 1.26200 0.86447 0.80454 0.82950 0.77591 1.19796 1.21051 1.20911 1.23299 1.04084 0.86953 0.94053 0.91964 0.91198 0.91696 0.93651 0.93342 0.91992 0.92270 0.92590 0.91603 0.90353 0.91057 0.93617 0.90131 0.92434 0.88198 0.89907 0.91903 0.93262 0.91995 0.92197 0.95107 0.93943 0.92840 0.87124 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.46 6.66 37.16 0.25 0.70 16 3 O -0.38 -4.23 10.31 -40.08 -0.41 -4.64 16 4 C 0.06 0.59 6.32 37.16 0.23 0.83 16 5 C 0.06 0.65 6.19 37.16 0.23 0.88 16 6 O -0.37 -4.97 10.05 -40.08 -0.40 -5.37 16 7 C 0.08 1.11 3.51 -24.87 -0.09 1.02 16 8 H 0.08 0.96 7.88 -51.93 -0.41 0.55 16 9 C -0.15 -1.71 6.69 -25.38 -0.17 -1.88 16 10 C 0.04 0.44 6.70 -2.76 -0.02 0.42 16 11 N -0.50 -7.78 5.11 -231.89 -1.18 -8.96 16 12 C 0.03 0.46 3.77 -4.98 -0.02 0.45 16 13 C 0.51 10.73 7.31 -10.99 -0.08 10.65 16 14 O -0.52 -13.31 13.87 5.55 0.08 -13.24 16 15 N -0.60 -12.80 2.46 -175.05 -0.43 -13.23 16 16 C 0.11 1.73 5.85 -4.04 -0.02 1.70 16 17 C -0.17 -2.32 10.18 37.16 0.38 -1.94 16 18 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 19 C -0.52 -15.00 9.39 -34.44 -0.32 -15.32 16 20 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 23 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.04 0.70 5.31 -1.90 -0.01 0.69 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 37 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.50 7.68 -51.92 -0.40 0.10 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.80 6.70 -51.93 -0.35 0.46 16 42 H 0.10 1.43 7.71 -51.93 -0.40 1.03 16 43 H 0.08 1.39 8.07 -51.92 -0.42 0.97 16 44 H 0.06 0.85 6.61 -51.93 -0.34 0.50 16 45 H 0.05 0.66 7.12 -51.93 -0.37 0.29 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 49 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.11 2.12 6.43 -51.93 -0.33 1.78 16 52 H 0.05 0.80 8.01 -51.93 -0.42 0.39 16 LS Contribution 416.43 15.07 6.28 6.28 Total: -1.00 -34.52 416.43 -9.45 -43.97 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -9.70 Total: -1.45 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 0.62 Total: 5.65 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -0.88 Total: -48.36 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.74 Total: -23.25 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.52 -9.45 -43.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441654495.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.477 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds