Wall clock time and date at job start Tue Mar 31 2020 05:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38162 * 120.03025 * 2 1 4 4 C 1.38246 * 120.05734 * 180.25464 * 3 2 1 5 5 S 1.76199 * 119.94507 * 179.74801 * 4 3 2 6 6 O 1.42099 * 106.40394 * 23.55949 * 5 4 3 7 7 O 1.42099 * 106.40515 * 156.48301 * 5 4 3 8 8 N 1.65597 * 107.21870 * 270.02177 * 5 4 3 9 9 C 1.46505 * 120.00004 * 64.99876 * 8 5 4 10 10 C 1.50695 * 109.47111 * 165.00296 * 9 8 5 11 11 H 1.08007 * 119.99974 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00494 * 179.97438 * 10 9 8 13 13 N 1.31523 * 119.99297 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00580 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47123 * 90.00204 * 14 12 10 16 16 H 1.48507 * 109.47339 * 210.00164 * 14 12 10 17 17 H 1.48495 * 109.47008 * 330.00086 * 14 12 10 18 18 C 1.38283 * 120.11014 * 359.76698 * 4 3 2 19 19 C 1.38121 * 120.05809 * 0.02562 * 18 4 3 20 20 C 1.38715 * 120.02923 * 179.76887 * 2 1 3 21 21 O 1.35905 * 120.05074 * 359.97438 * 20 2 1 22 22 C 1.42901 * 116.99604 * 179.72595 * 21 20 2 23 23 C 1.50704 * 109.46992 * 179.97438 * 22 21 20 24 24 O 1.20821 * 119.99761 * 359.97438 * 23 22 21 25 25 O 1.34227 * 119.99635 * 180.02562 * 23 22 21 26 26 H 1.09007 * 109.47246 * 270.23105 * 1 2 3 27 27 H 1.09000 * 109.47282 * 30.22882 * 1 2 3 28 28 H 1.08999 * 109.47028 * 150.23064 * 1 2 3 29 29 H 1.08000 * 119.97514 * 0.02562 * 3 2 1 30 30 H 0.97005 * 119.99925 * 245.00038 * 8 5 4 31 31 H 1.09000 * 109.47208 * 284.99879 * 9 8 5 32 32 H 1.08994 * 109.47166 * 45.00480 * 9 8 5 33 33 H 0.97003 * 119.99744 * 179.97438 * 13 12 10 34 34 H 1.08007 * 119.97266 * 179.97438 * 18 4 3 35 35 H 1.08002 * 120.02792 * 179.97438 * 19 18 4 36 36 H 1.08996 * 109.47352 * 299.99771 * 22 21 20 37 37 H 1.08999 * 109.47144 * 59.99795 * 22 21 20 38 38 H 0.96700 * 116.99463 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 -0.0053 5 16 4.4596 2.7240 -0.0120 6 8 3.5789 3.6962 0.5341 7 8 5.7453 2.4496 0.5276 8 7 4.6975 3.1457 -1.5956 9 6 3.5500 3.4615 -2.4499 10 6 4.0293 4.1562 -3.6984 11 1 5.0833 4.3433 -3.8414 12 6 3.1224 4.5519 -4.6586 13 7 1.8389 4.3236 -4.4845 14 14 3.7164 5.4136 -6.2058 15 1 4.0087 4.4030 -7.2540 16 1 2.6627 6.3403 -6.6919 17 1 4.9499 6.1824 -5.9016 18 6 4.2752 0.0009 -0.0058 19 6 3.5886 -1.1976 -0.0015 20 6 2.2012 -1.2009 0.0048 21 8 1.5233 -2.3788 0.0101 22 6 2.3033 -3.5762 0.0088 23 6 1.3870 -4.7726 0.0159 24 8 0.1890 -4.6160 0.0219 25 8 1.9019 -6.0122 0.0165 26 1 -0.3634 0.0041 1.0277 27 1 -0.3634 0.8879 -0.5174 28 1 -0.3633 -0.8920 -0.5102 29 1 1.6585 2.1315 0.0004 30 1 5.5967 3.1837 -1.9576 31 1 3.0349 2.5402 -2.7218 32 1 2.8647 4.1154 -1.9107 33 1 1.2008 4.6023 -5.1599 34 1 5.3552 0.0040 -0.0104 35 1 4.1314 -2.1313 -0.0023 36 1 2.9281 -3.6019 -0.8839 37 1 2.9362 -3.5985 0.8960 38 1 1.2746 -6.7481 0.0215 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447145204.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:36 Heat of formation + Delta-G solvation = -178.893540 kcal Electronic energy + Delta-G solvation = -25495.098165 eV Core-core repulsion = 21430.139566 eV Total energy + Delta-G solvation = -4064.958599 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.05636 -40.15538 -37.76649 -36.71530 -36.54840 -35.32748 -34.62517 -32.99725 -32.15698 -30.73969 -29.36398 -26.88374 -26.73466 -23.54333 -22.55369 -22.33136 -21.55815 -19.01716 -18.78896 -17.98707 -17.55638 -17.36169 -17.14553 -16.93168 -16.06332 -15.87937 -15.44744 -15.25818 -14.65916 -14.44644 -14.14737 -13.66467 -13.53201 -13.37458 -13.17871 -12.86084 -12.59559 -12.35912 -12.13834 -12.05067 -12.02029 -11.81099 -11.61101 -11.58505 -11.49458 -11.21119 -10.96091 -10.91922 -10.75982 -10.55468 -10.12800 -9.44301 -9.01693 -8.92750 -8.54687 -8.23687 -6.18780 -4.23319 0.79799 1.07970 1.22527 1.64080 1.79968 3.20439 3.24562 3.31025 3.32283 3.35289 3.78623 4.27539 4.32473 4.34004 4.43909 4.51353 4.60765 4.63424 4.90246 5.17970 5.22034 5.22646 5.42270 5.50199 5.74151 5.80731 5.91815 5.94630 6.10586 6.18556 6.26706 6.43351 6.55475 6.97886 7.27282 7.33084 7.34213 7.78760 7.79485 8.16571 8.80717 9.41654 10.91544 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.003230 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.852575 B = 8667.590259 C = 9740.467436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.127 4.127 3 C 0.024 3.976 4 C -0.696 4.696 5 S 2.693 3.307 6 O -0.962 6.962 7 O -0.981 6.981 8 N -1.103 6.103 9 C 0.246 3.754 10 C -0.530 4.530 11 H 0.066 0.934 12 C 0.061 3.939 13 N -0.890 5.890 14 Si 0.903 3.097 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.015 3.985 19 C -0.230 4.230 20 C 0.170 3.830 21 O -0.289 6.289 22 C 0.065 3.935 23 C 0.483 3.517 24 O -0.489 6.489 25 O -0.511 6.511 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.411 0.589 31 H 0.022 0.978 32 H 0.039 0.961 33 H 0.266 0.734 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.174 -17.945 9.055 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.129 4.129 3 C 0.005 3.995 4 C -0.781 4.781 5 S 2.782 3.218 6 O -0.952 6.952 7 O -0.972 6.972 8 N -0.865 5.865 9 C 0.123 3.877 10 C -0.569 4.569 11 H 0.084 0.916 12 C -0.142 4.142 13 N -0.527 5.527 14 Si 0.731 3.269 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.004 4.004 19 C -0.249 4.249 20 C 0.125 3.875 21 O -0.202 6.202 22 C -0.012 4.012 23 C 0.323 3.677 24 O -0.374 6.374 25 O -0.325 6.325 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.169 0.831 30 H 0.245 0.755 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 0.752 -17.146 9.779 19.753 hybrid contribution 0.044 -0.868 -1.452 1.692 sum 0.796 -18.013 8.327 19.861 Atomic orbital electron populations 1.20672 0.89611 1.03658 1.02564 1.19360 0.97178 0.89783 1.06529 1.20794 0.91951 0.98158 0.88609 1.31129 1.06327 1.21040 1.19647 1.01744 0.73061 0.73706 0.73337 1.93564 1.67397 1.56955 1.77309 1.93518 1.39589 1.86056 1.77992 1.55451 1.16986 1.83893 1.30205 1.19092 0.82670 0.96136 0.89849 1.21190 0.94081 1.38982 1.02691 0.91611 1.24971 0.94789 0.95799 0.98640 1.69937 1.01094 1.46485 1.35233 0.86417 0.78558 0.79396 0.82572 1.20550 1.21022 1.19695 1.20650 1.00100 0.90278 0.89400 1.21246 0.92547 0.99721 1.11380 1.18953 0.90513 0.84450 0.93622 1.86081 1.34292 1.11347 1.88449 1.21867 0.92048 0.81273 1.05990 1.22593 0.87906 0.84199 0.72980 1.90801 1.16770 1.86336 1.43536 1.84428 1.45912 1.16306 1.85864 0.91186 0.90652 0.90884 0.83078 0.75520 0.96011 0.94294 0.92452 0.83913 0.84646 0.87089 0.87195 0.72010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.79 36.00 0.35 -1.04 16 2 C -0.13 -1.86 5.89 -104.48 -0.62 -2.48 16 3 C 0.02 0.39 9.17 -39.61 -0.36 0.02 16 4 C -0.70 -11.26 5.95 -39.56 -0.24 -11.49 16 5 S 2.69 49.05 5.74 -107.50 -0.62 48.44 16 6 O -0.96 -20.29 16.75 -57.17 -0.96 -21.25 16 7 O -0.98 -18.41 17.28 -57.17 -0.99 -19.40 16 8 N -1.10 -21.76 5.99 -11.66 -0.07 -21.83 16 9 C 0.25 5.94 5.98 -5.19 -0.03 5.91 16 10 C -0.53 -13.97 9.27 -34.44 -0.32 -14.29 16 11 H 0.07 1.66 7.65 -52.48 -0.40 1.25 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 14 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 C 0.01 0.21 9.51 -39.61 -0.38 -0.17 16 19 C -0.23 -2.69 9.04 -39.43 -0.36 -3.05 16 20 C 0.17 2.24 6.66 -39.22 -0.26 1.97 16 21 O -0.29 -3.45 8.72 -39.39 -0.34 -3.79 16 22 C 0.06 0.50 5.33 36.01 0.19 0.69 16 23 C 0.48 4.11 8.40 36.01 0.30 4.41 16 24 O -0.49 -6.18 17.26 -25.47 -0.44 -6.62 16 25 O -0.51 -2.68 13.42 -39.25 -0.53 -3.21 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 28 H 0.07 0.94 7.53 -51.93 -0.39 0.55 16 29 H 0.15 2.42 7.61 -52.49 -0.40 2.02 16 30 H 0.41 7.35 8.54 -34.47 -0.29 7.05 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 1.02 7.75 -51.93 -0.40 0.61 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.14 1.69 7.61 -52.48 -0.40 1.29 16 35 H 0.14 1.05 6.30 -52.49 -0.33 0.72 16 36 H 0.11 0.63 7.66 -51.93 -0.40 0.23 16 37 H 0.11 0.57 7.66 -51.93 -0.40 0.17 16 38 H 0.42 0.50 9.10 45.56 0.41 0.91 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -36.00 349.85 -8.16 -44.17 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.40 Total: 4.92 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -1.81 Total: -17.96 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.67 Total: -46.13 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -3.26 Total: -54.28 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 49.05 SS G_CDS: -0.62 Total: 48.44 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.00 -8.16 -44.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447145204.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.728 kcal (2) G-P(sol) polarization free energy of solvation -36.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds