Wall clock time and date at job start Tue Mar 31 2020 05:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35902 * 117.00525 * 2 1 4 4 C 1.38753 * 120.05163 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.94653 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05391 * 359.97438 * 5 4 3 7 7 S 1.76195 * 119.94578 * 179.97438 * 6 5 4 8 8 O 1.42095 * 106.40587 * 203.53920 * 7 6 5 9 9 O 1.42095 * 106.40437 * 336.46326 * 7 6 5 10 10 N 1.65605 * 107.21657 * 90.00020 * 7 6 5 11 11 C 1.46503 * 119.99713 * 64.99990 * 10 7 6 12 12 C 1.50703 * 109.46961 * 164.99783 * 11 10 7 13 13 H 1.07997 * 120.00026 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00030 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00060 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.46846 * 90.00589 * 16 14 12 18 18 H 1.48500 * 109.46843 * 210.00292 * 16 14 12 19 19 H 1.48497 * 109.47230 * 330.00234 * 16 14 12 20 20 C 1.38249 * 120.10986 * 359.74878 * 6 5 4 21 21 C 1.38164 * 120.05300 * 0.50457 * 20 6 5 22 22 C 1.50697 * 120.02388 * 179.77063 * 21 20 6 23 23 C 1.50700 * 109.47266 * 264.72294 * 22 21 20 24 24 O 1.20822 * 119.99958 * 0.02562 * 23 22 21 25 25 O 1.34234 * 120.00068 * 180.02562 * 23 22 21 26 26 H 1.09000 * 109.46634 * 300.00520 * 1 2 3 27 27 H 1.08995 * 109.46925 * 60.00171 * 1 2 3 28 28 H 1.08996 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.02955 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.97631 * 180.02562 * 5 4 3 31 31 H 0.96995 * 120.00060 * 245.00214 * 10 7 6 32 32 H 1.08998 * 109.47091 * 285.00158 * 11 10 7 33 33 H 1.09002 * 109.47269 * 45.00597 * 11 10 7 34 34 H 0.96993 * 119.99763 * 179.97438 * 15 14 12 35 35 H 1.08003 * 119.97039 * 180.25227 * 20 6 5 36 36 H 1.09004 * 109.47205 * 144.72388 * 22 21 20 37 37 H 1.08997 * 109.47395 * 24.72880 * 22 21 20 38 38 H 0.96698 * 117.00153 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 16 4.1020 5.2456 0.0016 8 8 5.3979 5.0357 -0.5422 9 8 3.1710 6.1704 -0.5433 10 7 4.3239 5.6826 1.5834 11 6 5.2140 4.8975 2.4423 12 6 5.5333 5.6843 3.6874 13 1 5.1147 6.6702 3.8254 14 6 6.3590 5.1449 4.6509 15 7 6.8683 3.9440 4.4832 16 14 6.7541 6.1198 6.1946 17 1 5.7467 5.8169 7.2426 18 1 8.1053 5.7456 6.6839 19 1 6.7246 7.5716 5.8842 20 6 4.0561 2.5170 0.0069 21 6 3.4312 1.2847 0.0010 22 6 4.2538 0.0221 0.0015 23 6 4.4247 -0.4667 -1.4137 24 8 3.9298 0.1476 -2.3289 25 8 5.1269 -1.5844 -1.6576 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.2129 2.3204 0.0005 30 1 1.3341 4.5114 0.0019 31 1 3.8646 6.4584 1.9413 32 1 4.7229 3.9644 2.7180 33 1 6.1366 4.6777 1.9050 34 1 7.4495 3.5647 5.1608 35 1 5.1345 2.5751 0.0114 36 1 3.7465 -0.7418 0.5909 37 1 5.2323 0.2261 0.4362 38 1 5.2089 -1.8586 -2.5812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447146012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:41 Heat of formation + Delta-G solvation = -181.579147 kcal Electronic energy + Delta-G solvation = -26113.940089 eV Core-core repulsion = 22048.865034 eV Total energy + Delta-G solvation = -4065.075056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.79140 -39.85176 -37.63228 -36.68919 -36.15918 -35.29861 -34.61733 -33.23551 -32.15484 -30.47993 -28.51257 -27.44448 -26.73943 -23.11294 -22.70000 -22.48495 -21.20848 -18.85061 -18.25674 -18.16563 -17.49960 -16.96132 -16.80630 -16.56642 -15.89607 -15.85711 -15.71630 -15.26941 -14.70531 -14.60109 -14.08288 -13.59676 -13.41497 -13.28140 -13.22517 -12.71189 -12.53698 -12.41787 -12.16880 -12.10521 -11.80050 -11.57172 -11.55321 -11.48295 -11.41804 -11.09378 -10.96034 -10.75627 -10.65268 -10.55506 -10.12613 -9.44201 -9.02672 -8.93000 -8.57008 -8.23207 -6.19238 -4.23430 0.85224 1.11320 1.20501 2.18939 2.93029 2.95555 3.24494 3.31353 3.34560 3.49698 3.82629 4.30166 4.33914 4.37148 4.56543 4.71494 4.88956 4.98345 4.99260 5.09779 5.18119 5.19225 5.28096 5.33769 5.44547 5.58291 5.83182 5.97871 6.09293 6.16739 6.41651 6.44405 6.58214 7.08727 7.27058 7.33230 7.78844 7.80565 7.84037 8.16892 8.80661 9.41567 10.91220 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.003913 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.049974 B = 7154.318080 C = 7777.612907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.193 3.807 4 C -0.231 4.231 5 C 0.027 3.973 6 C -0.702 4.702 7 S 2.694 3.306 8 O -0.963 6.963 9 O -0.981 6.981 10 N -1.103 6.103 11 C 0.245 3.755 12 C -0.529 4.529 13 H 0.066 0.934 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.903 3.097 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.041 3.959 21 C -0.135 4.135 22 C -0.064 4.064 23 C 0.482 3.518 24 O -0.509 6.509 25 O -0.518 6.518 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.410 0.590 32 H 0.022 0.978 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.150 0.850 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.906 -10.716 -8.180 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.146 3.854 4 C -0.251 4.251 5 C 0.007 3.993 6 C -0.788 4.788 7 S 2.782 3.218 8 O -0.952 6.952 9 O -0.971 6.971 10 N -0.866 5.866 11 C 0.122 3.878 12 C -0.569 4.569 13 H 0.084 0.916 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.730 3.270 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.197 1.197 20 C 0.021 3.979 21 C -0.136 4.136 22 C -0.101 4.101 23 C 0.324 3.676 24 O -0.396 6.396 25 O -0.330 6.330 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.154 0.846 30 H 0.161 0.839 31 H 0.245 0.755 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.167 0.833 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -10.544 -10.482 -8.747 17.250 hybrid contribution -0.547 -0.027 0.777 0.951 sum -11.091 -10.509 -7.971 17.233 Atomic orbital electron populations 1.23138 0.77848 1.04192 1.01837 1.86050 1.21938 1.26913 1.87599 1.18951 0.91627 0.84296 0.90527 1.21229 1.00203 0.92119 1.11512 1.20693 0.92401 0.98037 0.88137 1.31050 1.04954 1.22125 1.20680 1.01729 0.73589 0.73175 0.73314 1.93561 1.38284 1.86057 1.77346 1.93516 1.64807 1.61011 1.77789 1.55460 1.60065 1.40765 1.30287 1.19096 0.88167 0.90781 0.89746 1.21198 1.30156 1.02798 1.02737 0.91605 1.24957 0.95445 0.95115 0.98605 1.69927 1.32344 1.15406 1.35165 0.86420 0.77731 0.80263 0.82557 1.20555 1.21027 1.19695 1.20700 1.00357 0.89633 0.87165 1.18578 0.90197 0.94444 1.10393 1.20064 1.03076 0.95975 0.90995 1.23434 0.74119 0.77429 0.92632 1.90732 1.45815 1.56167 1.46874 1.84537 1.69019 1.42899 1.36561 0.92104 0.92294 0.88021 0.84575 0.83931 0.75529 0.95985 0.94305 0.92467 0.83251 0.86224 0.85861 0.73353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.72 9.63 -19.43 -0.19 -3.90 16 3 C 0.19 2.69 6.66 -39.22 -0.26 2.43 16 4 C -0.23 -3.04 9.04 -39.44 -0.36 -3.39 16 5 C 0.03 0.39 9.51 -39.61 -0.38 0.02 16 6 C -0.70 -11.95 5.95 -39.56 -0.24 -12.18 16 7 S 2.69 50.82 5.73 -107.50 -0.62 50.20 16 8 O -0.96 -20.92 16.75 -57.18 -0.96 -21.88 16 9 O -0.98 -19.13 17.28 -57.18 -0.99 -20.12 16 10 N -1.10 -22.02 5.99 -11.65 -0.07 -22.09 16 11 C 0.25 5.91 5.98 -5.19 -0.03 5.88 16 12 C -0.53 -13.91 9.27 -34.44 -0.32 -14.23 16 13 H 0.07 1.66 7.65 -52.49 -0.40 1.25 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 16 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.04 0.68 9.15 -39.60 -0.36 0.31 16 21 C -0.13 -2.01 4.39 -104.48 -0.46 -2.47 16 22 C -0.06 -0.78 5.67 -29.04 -0.16 -0.94 16 23 C 0.48 6.17 8.32 36.01 0.30 6.47 16 24 O -0.51 -8.23 16.79 -18.75 -0.31 -8.54 16 25 O -0.52 -5.03 13.42 -39.27 -0.53 -5.56 16 26 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 27 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.14 1.32 6.30 -52.49 -0.33 0.99 16 30 H 0.14 1.83 7.61 -52.49 -0.40 1.43 16 31 H 0.41 7.44 8.54 -34.47 -0.29 7.15 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.04 1.01 7.75 -51.93 -0.40 0.61 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.15 2.43 7.62 -52.48 -0.40 2.03 16 36 H 0.12 1.23 7.69 -51.93 -0.40 0.83 16 37 H 0.12 1.32 8.05 -51.93 -0.42 0.90 16 38 H 0.41 2.24 9.10 45.56 0.41 2.65 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -35.90 349.18 -7.46 -43.37 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -3.41 Total: 7.21 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.37 Total: -15.36 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.67 Total: -46.12 kcal Atomic # 8 Polarization: -57.02 SS G_CDS: -2.97 Total: -60.00 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 50.82 SS G_CDS: -0.62 Total: 50.20 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.90 -7.46 -43.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447146012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.213 kcal (2) G-P(sol) polarization free energy of solvation -35.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds