Wall clock time and date at job start Tue Mar 31 2020 04:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46798 * 2 1 4 4 C 1.46501 * 119.99855 * 90.00296 * 3 2 1 5 5 C 1.50707 * 109.47074 * 89.99995 * 4 3 2 6 6 H 1.08004 * 120.00087 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99896 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00029 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00169 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46965 * 90.00263 * 9 7 5 11 11 H 1.48491 * 109.47025 * 210.00284 * 9 7 5 12 12 H 1.48501 * 109.46904 * 330.00488 * 9 7 5 13 13 C 1.34775 * 120.00205 * 270.00373 * 3 2 1 14 14 O 1.21278 * 119.99855 * 180.02562 * 13 3 2 15 15 C 1.50695 * 119.99988 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.47285 * 174.94448 * 15 13 3 17 17 C 1.46893 * 111.00034 * 195.04071 * 16 15 13 18 18 C 1.53001 * 109.47087 * 155.03710 * 17 16 15 19 19 O 1.42903 * 109.47026 * 62.02965 * 18 17 16 20 20 C 1.42897 * 114.00035 * 184.72565 * 19 18 17 21 21 C 1.46907 * 110.99831 * 71.08894 * 16 15 13 22 22 H 1.09001 * 110.43556 * 354.30699 * 21 16 15 23 23 C 1.54812 * 110.48535 * 116.99453 * 21 16 15 24 24 C 1.55001 * 102.08580 * 139.55522 * 23 21 16 25 25 O 1.44373 * 103.49200 * 322.97522 * 24 23 21 26 26 C 1.43741 * 106.97665 * 40.06307 * 25 24 23 27 27 H 1.08996 * 110.00363 * 92.98252 * 26 25 24 28 28 C 1.53009 * 109.87799 * 214.06053 * 26 25 24 29 29 H 1.09002 * 109.46796 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46971 * 299.99696 * 1 2 3 31 31 H 1.08995 * 109.47566 * 59.99690 * 1 2 3 32 32 H 1.09000 * 109.46971 * 240.00304 * 2 1 3 33 33 H 1.08995 * 109.47566 * 120.00310 * 2 1 3 34 34 H 1.09004 * 109.47230 * 209.99690 * 4 3 2 35 35 H 1.08993 * 109.47312 * 330.00133 * 4 3 2 36 36 H 0.96996 * 120.00038 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.47154 * 294.94526 * 15 13 3 38 38 H 1.09003 * 109.47031 * 54.94655 * 15 13 3 39 39 H 1.08999 * 109.47318 * 275.03879 * 17 16 15 40 40 H 1.09000 * 109.47157 * 35.04365 * 17 16 15 41 41 H 1.09002 * 109.47547 * 182.02503 * 18 17 16 42 42 H 1.08994 * 109.47335 * 302.02567 * 18 17 16 43 43 H 1.08997 * 109.47454 * 65.00503 * 20 19 18 44 44 H 1.08997 * 109.46933 * 185.00365 * 20 19 18 45 45 H 1.08994 * 109.47101 * 305.00130 * 20 19 18 46 46 H 1.09002 * 110.90536 * 257.74771 * 23 21 16 47 47 H 1.09000 * 110.90583 * 21.35882 * 23 21 16 48 48 H 1.09001 * 110.61416 * 204.47155 * 24 23 21 49 49 H 1.09006 * 110.75137 * 81.54579 * 24 23 21 50 50 H 1.08995 * 109.47053 * 182.11826 * 28 26 25 51 51 H 1.09000 * 109.47083 * 302.11970 * 28 26 25 52 52 H 1.08995 * 109.46746 * 62.11997 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8351 1.7037 6 1 4.3427 1.2303 1.0961 7 6 4.1492 2.3897 2.8780 8 7 5.3912 2.1827 3.2578 9 14 3.0128 3.4351 3.9293 10 1 2.3073 2.5688 4.9076 11 1 3.8103 4.4551 4.6564 12 1 2.0176 4.1123 3.0598 13 6 2.2428 2.0167 -1.1672 14 8 2.6475 3.1600 -1.1671 15 6 1.9922 1.3062 -2.4722 16 7 2.1935 2.2425 -3.5861 17 6 1.6246 1.7096 -4.8312 18 6 1.2818 2.8669 -5.7715 19 8 2.4751 3.5784 -6.1058 20 6 2.2525 4.7470 -6.8975 21 6 3.6173 2.5636 -3.7531 22 1 4.2049 2.1162 -2.9514 23 6 4.1233 2.0806 -5.1342 24 6 5.0400 3.2514 -5.5716 25 8 4.3478 4.4212 -5.0848 26 6 3.8255 4.0901 -3.7872 27 1 4.5344 4.3849 -3.0136 28 6 2.4894 4.8025 -3.5670 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0955 3.1411 1.1385 35 1 1.5818 1.6877 2.0284 36 1 5.7172 2.5731 4.0837 37 1 2.6854 0.4707 -2.5701 38 1 0.9682 0.9329 -2.4919 39 1 2.3511 1.0542 -5.3114 40 1 0.7199 1.1453 -4.6049 41 1 0.8265 2.4738 -6.6806 42 1 0.5827 3.5416 -5.2776 43 1 1.6827 5.4745 -6.3195 44 1 3.2110 5.1804 -7.1830 45 1 1.6942 4.4776 -7.7940 46 1 4.6924 1.1559 -5.0383 47 1 3.2939 1.9550 -5.8302 48 1 5.1305 3.2830 -6.6574 49 1 6.0229 3.1663 -5.1081 50 1 2.1178 4.5769 -2.5674 51 1 2.6304 5.8786 -3.6680 52 1 1.7682 4.4593 -4.3087 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489405836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:30 Heat of formation + Delta-G solvation = -62.952618 kcal Electronic energy + Delta-G solvation = -31785.428655 eV Core-core repulsion = 27787.962707 eV Total energy + Delta-G solvation = -3997.465949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50283 -38.89275 -37.38862 -36.11936 -35.20727 -32.72324 -31.14563 -30.73183 -30.40621 -30.16671 -27.96920 -26.29181 -25.86006 -24.39260 -22.97389 -22.86593 -21.94522 -21.31729 -19.21086 -18.28962 -17.14355 -16.95703 -16.81911 -16.55019 -15.89652 -15.50337 -15.45770 -14.80373 -14.47781 -14.40097 -14.20463 -13.84574 -13.68654 -13.57017 -13.46684 -12.73185 -12.63118 -12.36703 -12.20732 -12.07255 -11.99152 -11.80595 -11.73069 -11.56056 -11.51553 -11.20100 -11.14242 -10.95047 -10.78751 -10.73748 -10.57497 -10.47358 -10.22147 -10.13304 -10.06284 -9.51614 -9.37425 -8.98050 -8.90053 -8.57667 -8.05335 -7.66089 -6.07336 -4.05678 3.27860 3.36098 3.40398 3.41484 3.56203 3.88042 4.13552 4.41361 4.43023 4.87673 4.90360 5.02713 5.09059 5.18477 5.21625 5.27131 5.35298 5.37196 5.38461 5.42682 5.48234 5.50469 5.56105 5.57968 5.61428 5.68582 5.72706 5.80196 5.89172 5.94552 5.96552 6.08180 6.13949 6.14426 6.29625 6.35232 6.38948 6.53546 6.69154 6.87698 6.98742 7.07836 7.17363 7.23218 7.35123 7.45501 7.56905 7.63964 8.32011 8.49463 8.95275 9.10226 9.53680 11.06153 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.015931 B = 0.003938 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.107723 B = 7109.128586 C = 7898.947360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.219 3.781 5 C -0.526 4.526 6 H 0.072 0.928 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.508 3.492 14 O -0.515 6.515 15 C 0.034 3.966 16 N -0.503 5.503 17 C 0.042 3.958 18 C 0.055 3.945 19 O -0.348 6.348 20 C 0.039 3.961 21 C 0.075 3.925 22 H 0.073 0.927 23 C -0.188 4.188 24 C 0.068 3.932 25 O -0.365 6.365 26 C 0.109 3.891 27 H 0.056 0.944 28 C -0.128 4.128 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.022 0.978 36 H 0.264 0.736 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.035 0.965 44 H 0.083 0.917 45 H 0.023 0.977 46 H 0.059 0.941 47 H 0.121 0.879 48 H 0.078 0.922 49 H 0.042 0.958 50 H 0.088 0.912 51 H 0.024 0.976 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 -3.603 -19.595 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.098 3.902 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.188 1.188 13 C 0.294 3.706 14 O -0.391 6.391 15 C -0.097 4.097 16 N -0.226 5.226 17 C -0.086 4.086 18 C -0.023 4.023 19 O -0.266 6.266 20 C -0.057 4.057 21 C -0.034 4.034 22 H 0.091 0.909 23 C -0.226 4.226 24 C -0.010 4.010 25 O -0.284 6.284 26 C 0.051 3.949 27 H 0.074 0.926 28 C -0.185 4.185 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.101 0.899 45 H 0.042 0.958 46 H 0.077 0.923 47 H 0.138 0.862 48 H 0.096 0.904 49 H 0.060 0.940 50 H 0.106 0.894 51 H 0.043 0.957 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.714 -2.351 -19.347 21.776 hybrid contribution -0.197 -0.525 0.679 0.881 sum -9.911 -2.876 -18.668 21.330 Atomic orbital electron populations 1.22235 0.96843 1.01441 1.02250 1.21409 0.93331 0.84138 1.02872 1.47934 1.64736 1.13209 1.07029 1.19597 0.96894 0.93637 0.80027 1.21328 0.95449 1.32689 1.07015 0.90945 1.24852 0.94985 0.95768 0.97381 1.69896 1.15219 1.45078 1.23527 0.86871 0.81330 0.80897 0.80795 1.20204 1.21003 1.18803 1.20150 0.78697 0.87166 0.84599 1.90616 1.44305 1.17521 1.86608 1.22206 1.02327 0.94061 0.91136 1.61815 1.16179 1.41793 1.02851 1.22538 0.99744 0.95574 0.90756 1.22534 0.89120 0.94308 0.96318 1.88416 1.27937 1.38686 1.71602 1.22569 1.01689 0.88430 0.93033 1.22941 0.87134 0.97378 0.95931 0.90881 1.24136 1.01370 0.98142 0.98911 1.23039 0.93834 0.85389 0.98728 1.88805 1.71771 1.34231 1.33624 1.22319 0.95964 0.92733 0.83896 0.92629 1.21884 0.95894 0.96500 1.04250 0.92121 0.92223 0.92975 0.91746 0.89866 0.94129 0.95969 0.92615 0.92363 0.88729 0.91918 0.90208 0.93740 0.92416 0.94629 0.89888 0.95816 0.92273 0.86195 0.90376 0.94012 0.89386 0.95653 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.19 37.16 0.38 -1.64 16 2 C 0.11 1.58 5.86 -4.04 -0.02 1.56 16 3 N -0.60 -11.74 2.46 -175.06 -0.43 -12.17 16 4 C 0.22 5.26 4.23 -5.19 -0.02 5.24 16 5 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 6 H 0.07 2.26 8.06 -52.48 -0.42 1.84 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 9 Si 0.87 21.62 27.47 -169.99 -4.67 16.95 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 13 C 0.51 9.80 7.29 -10.99 -0.08 9.72 16 14 O -0.52 -11.86 11.93 5.56 0.07 -11.80 16 15 C 0.03 0.47 3.72 -4.98 -0.02 0.45 16 16 N -0.50 -6.84 2.34 -226.25 -0.53 -7.37 16 17 C 0.04 0.42 5.28 -3.83 -0.02 0.40 16 18 C 0.05 0.54 5.10 37.16 0.19 0.72 16 19 O -0.35 -3.94 2.49 -59.36 -0.15 -4.08 16 20 C 0.04 0.40 9.81 101.05 0.99 1.39 16 21 C 0.07 1.14 2.20 -66.18 -0.15 0.99 16 22 H 0.07 1.31 7.17 -51.93 -0.37 0.94 16 23 C -0.19 -2.30 4.93 -24.72 -0.12 -2.42 16 24 C 0.07 0.87 7.02 38.21 0.27 1.14 16 25 O -0.37 -5.62 8.13 -59.36 -0.48 -6.10 16 26 C 0.11 1.84 3.23 -26.15 -0.08 1.76 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 28 C -0.13 -2.16 8.12 37.16 0.30 -1.86 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.58 7.13 -51.93 -0.37 0.21 16 32 H 0.06 0.80 6.58 -51.93 -0.34 0.46 16 33 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 34 H 0.04 1.06 6.48 -51.93 -0.34 0.73 16 35 H 0.02 0.51 7.50 -51.93 -0.39 0.12 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.06 0.76 7.54 -51.93 -0.39 0.37 16 38 H 0.09 1.08 6.43 -51.93 -0.33 0.74 16 39 H 0.06 0.60 5.30 -51.93 -0.28 0.32 16 40 H 0.08 0.65 7.56 -51.93 -0.39 0.26 16 41 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.62 6.92 -51.93 -0.36 0.26 16 43 H 0.04 0.38 7.82 -51.93 -0.41 -0.03 16 44 H 0.08 0.87 7.74 -51.93 -0.40 0.46 16 45 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.12 1.35 2.94 -51.93 -0.15 1.20 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 49 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 1.73 5.39 -51.93 -0.28 1.45 16 51 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.07 1.00 2.93 -51.93 -0.15 0.85 16 LS Contribution 375.05 15.07 5.65 5.65 Total: -1.00 -33.12 375.05 -7.36 -40.48 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.77 Total: 1.28 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 1.17 Total: 4.13 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.19 Total: -46.52 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.56 Total: -21.98 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.12 -7.36 -40.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489405836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.471 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds