Wall clock time and date at job start Tue Mar 31 2020 04:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.46696 * 2 1 4 4 C 1.46499 * 119.99956 * 269.99174 * 3 2 1 5 5 C 1.50697 * 109.47219 * 270.00564 * 4 3 2 6 6 H 1.07997 * 120.00441 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99895 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99989 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99931 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47111 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47404 * 119.99644 * 9 7 5 12 12 H 1.48501 * 109.47003 * 239.99616 * 9 7 5 13 13 C 1.34778 * 120.00382 * 89.99690 * 3 2 1 14 14 O 1.21275 * 120.00148 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99583 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.46895 * 174.76424 * 15 13 3 17 17 C 1.46900 * 110.99906 * 161.76047 * 16 15 13 18 18 C 1.53001 * 109.47214 * 186.33319 * 17 16 15 19 19 O 1.42897 * 109.47377 * 62.18171 * 18 17 16 20 20 C 1.42902 * 114.00044 * 180.02562 * 19 18 17 21 21 C 1.46900 * 111.00255 * 285.71385 * 16 15 13 22 22 H 1.08996 * 110.90798 * 26.16443 * 21 16 15 23 23 C 1.55304 * 110.84770 * 149.74720 * 21 16 15 24 24 C 1.54945 * 100.93904 * 152.32457 * 23 21 16 25 25 O 1.43640 * 105.22566 * 323.50233 * 24 23 21 26 26 C 1.43475 * 109.83574 * 24.45582 * 25 24 23 27 27 H 1.09004 * 109.80241 * 238.74902 * 26 25 24 28 28 C 1.52996 * 109.89616 * 117.84381 * 26 25 24 29 29 H 1.08999 * 109.46975 * 180.02562 * 1 2 3 30 30 H 1.08987 * 109.47719 * 300.00432 * 1 2 3 31 31 H 1.09000 * 109.46522 * 60.00778 * 1 2 3 32 32 H 1.08991 * 109.47239 * 239.99567 * 2 1 3 33 33 H 1.09000 * 109.46522 * 119.99222 * 2 1 3 34 34 H 1.09003 * 109.46882 * 30.00564 * 4 3 2 35 35 H 1.08999 * 109.46948 * 150.00369 * 4 3 2 36 36 H 0.96998 * 120.00065 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47423 * 54.76740 * 15 13 3 38 38 H 1.09002 * 109.47107 * 294.76125 * 15 13 3 39 39 H 1.09007 * 109.47119 * 306.32897 * 17 16 15 40 40 H 1.08993 * 109.47393 * 66.33166 * 17 16 15 41 41 H 1.09000 * 109.47110 * 182.18842 * 18 17 16 42 42 H 1.09003 * 109.46803 * 302.18086 * 18 17 16 43 43 H 1.09008 * 109.46868 * 300.00027 * 20 19 18 44 44 H 1.08997 * 109.47250 * 60.00140 * 20 19 18 45 45 H 1.08999 * 109.47034 * 180.02562 * 20 19 18 46 46 H 1.09002 * 111.12842 * 34.40572 * 23 21 16 47 47 H 1.09004 * 111.12563 * 270.24013 * 23 21 16 48 48 H 1.09000 * 110.31151 * 82.47580 * 24 23 21 49 49 H 1.09008 * 110.30933 * 204.53763 * 24 23 21 50 50 H 1.08998 * 109.47293 * 301.78333 * 28 26 25 51 51 H 1.09005 * 109.47529 * 61.78299 * 28 26 25 52 52 H 1.08999 * 109.47314 * 181.77862 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7036 6 1 4.3429 1.2309 -1.0956 7 6 4.1495 2.3904 -2.8774 8 7 3.3496 3.1265 -3.6175 9 14 5.9136 2.0963 -3.4168 10 1 6.6009 1.2403 -2.4167 11 1 5.9207 1.4181 -4.7379 12 1 6.6217 3.3971 -3.5245 13 6 2.2428 2.0167 1.1672 14 8 2.6474 3.1599 1.1671 15 6 1.9911 1.3064 2.4723 16 7 2.4268 2.1596 3.5860 17 6 1.8239 1.7214 4.8519 18 6 2.1720 2.7219 5.9558 19 8 1.6205 3.9997 5.6319 20 6 1.8899 5.0123 6.6036 21 6 3.8922 2.1903 3.6836 22 1 4.3508 1.9915 2.7150 23 6 4.3795 3.5487 4.2575 24 6 5.7108 3.1243 4.9272 25 8 5.4615 1.8168 5.4670 26 6 4.3932 1.1875 4.7450 27 1 3.5824 0.9371 5.4291 28 6 4.9044 -0.0813 4.0598 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8898 31 1 -0.3632 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6757 3.5169 -4.4434 37 1 2.5505 0.3711 2.4908 38 1 0.9264 1.0951 2.5715 39 1 0.7410 1.6672 4.7391 40 1 2.2113 0.7379 5.1176 41 1 1.7575 2.3767 6.9030 42 1 3.2554 2.8051 6.0423 43 1 1.4697 4.7148 7.5645 44 1 2.9674 5.1430 6.7031 45 1 1.4376 5.9514 6.2848 46 1 3.6766 3.9391 4.9934 47 1 4.5536 4.2720 3.4609 48 1 6.5099 3.0821 4.1871 49 1 5.9714 3.8197 5.7251 50 1 5.7251 0.1733 3.3892 51 1 5.2566 -0.7850 4.8141 52 1 4.0958 -0.5364 3.4879 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489405842.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:32 Heat of formation + Delta-G solvation = -89.276871 kcal Electronic energy + Delta-G solvation = -31113.149338 eV Core-core repulsion = 27114.541885 eV Total energy + Delta-G solvation = -3998.607454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.77652 -38.85000 -37.78569 -36.20731 -35.09050 -32.79665 -31.47517 -31.14251 -30.58596 -30.01712 -27.70378 -26.44162 -26.15602 -24.78100 -22.99065 -22.53470 -22.12269 -21.62454 -20.00552 -18.31315 -17.66936 -16.94926 -16.49027 -16.18013 -16.02167 -15.63755 -15.42959 -15.01759 -14.63627 -14.42329 -14.30618 -13.97119 -13.84217 -13.58280 -13.37422 -13.23027 -12.85805 -12.74147 -12.51424 -12.21699 -12.10076 -11.99370 -11.90235 -11.63241 -11.59826 -11.33077 -11.23150 -11.16195 -11.06584 -10.87183 -10.84026 -10.67407 -10.51040 -10.43126 -10.10333 -9.62805 -9.58435 -9.47729 -8.84214 -8.41759 -8.04257 -7.58404 -6.02199 -4.06648 3.29884 3.37356 3.39935 3.45982 3.53525 3.72317 3.86626 4.22678 4.46289 4.54573 4.73075 4.78865 4.93225 4.99004 5.11435 5.15113 5.18700 5.24850 5.26711 5.28580 5.32511 5.33054 5.36172 5.39458 5.46182 5.49429 5.58012 5.60653 5.65789 5.66879 5.74079 5.79995 5.83548 5.91196 6.04031 6.11422 6.24652 6.25548 6.31842 6.49985 6.92474 6.95719 7.02407 7.17329 7.22165 7.50579 7.61770 7.95218 8.27019 8.50917 8.94344 9.21792 9.58669 11.05784 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.003966 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.064139 B = 7057.759024 C = 7752.468684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.505 3.495 14 O -0.516 6.516 15 C 0.033 3.967 16 N -0.491 5.491 17 C 0.046 3.954 18 C 0.048 3.952 19 O -0.365 6.365 20 C 0.028 3.972 21 C 0.066 3.934 22 H 0.098 0.902 23 C -0.153 4.153 24 C 0.044 3.956 25 O -0.379 6.379 26 C 0.026 3.974 27 H 0.096 0.904 28 C -0.163 4.163 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.030 0.970 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.038 0.962 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.060 0.940 49 H 0.082 0.918 50 H 0.063 0.937 51 H 0.061 0.939 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 -5.692 20.039 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.290 3.710 14 O -0.391 6.391 15 C -0.098 4.098 16 N -0.214 5.214 17 C -0.081 4.081 18 C -0.028 4.028 19 O -0.283 6.283 20 C -0.068 4.068 21 C -0.043 4.043 22 H 0.116 0.884 23 C -0.191 4.191 24 C -0.032 4.032 25 O -0.298 6.298 26 C -0.032 4.032 27 H 0.113 0.887 28 C -0.221 4.221 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.104 0.896 46 H 0.116 0.884 47 H 0.108 0.892 48 H 0.078 0.922 49 H 0.100 0.900 50 H 0.082 0.918 51 H 0.080 0.920 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.190 -4.540 19.745 20.510 hybrid contribution 1.282 -0.984 -0.296 1.643 sum -1.908 -5.524 19.449 20.308 Atomic orbital electron populations 1.22224 0.96866 1.01270 1.02383 1.21388 0.93477 0.84486 1.02395 1.48260 1.64452 1.13100 1.07697 1.19224 0.96064 0.93664 0.78135 1.21465 0.96966 1.31647 1.06131 0.92599 1.24924 0.97695 0.94988 0.96460 1.69940 1.35524 1.33547 1.14327 0.86488 0.84849 0.78032 0.78304 1.19891 1.20995 1.20901 1.20081 0.79171 0.87185 0.84550 1.90678 1.44273 1.17452 1.86726 1.22198 1.01900 0.94496 0.91232 1.61642 1.06238 1.51463 1.02093 1.22350 1.00766 0.95499 0.89500 1.22887 0.99113 0.84635 0.96204 1.88087 1.76305 1.18253 1.45703 1.22739 0.99886 0.92191 0.92023 1.23261 0.87974 0.94106 0.98952 0.88408 1.23576 0.95962 0.97878 1.01648 1.23437 0.97629 0.84230 0.97939 1.88443 1.54377 1.29864 1.57116 1.23896 0.90444 0.94008 0.94891 0.88670 1.22177 1.01994 0.97175 1.00733 0.92308 0.93091 0.92001 0.90073 0.92115 0.95192 0.93921 0.92823 0.92381 0.88444 0.89515 0.92348 0.93347 0.91393 0.94582 0.94312 0.89618 0.88437 0.89191 0.92176 0.90009 0.91830 0.92036 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.11 1.67 5.96 -4.04 -0.02 1.65 16 3 N -0.60 -12.52 2.46 -175.06 -0.43 -12.95 16 4 C 0.25 6.48 5.16 -5.20 -0.03 6.45 16 5 C -0.52 -14.77 9.39 -34.44 -0.32 -15.09 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 13 C 0.51 10.39 7.09 -10.98 -0.08 10.32 16 14 O -0.52 -13.01 15.37 5.56 0.09 -12.92 16 15 C 0.03 0.49 4.09 -4.97 -0.02 0.46 16 16 N -0.49 -7.20 3.99 -225.76 -0.90 -8.11 16 17 C 0.05 0.52 4.81 -3.82 -0.02 0.50 16 18 C 0.05 0.53 4.65 37.16 0.17 0.70 16 19 O -0.37 -4.74 9.59 -35.23 -0.34 -5.08 16 20 C 0.03 0.27 10.70 101.05 1.08 1.35 16 21 C 0.07 0.98 1.96 -65.77 -0.13 0.85 16 22 H 0.10 1.74 6.83 -51.93 -0.35 1.39 16 23 C -0.15 -2.18 6.12 -24.48 -0.15 -2.33 16 24 C 0.04 0.55 7.67 38.18 0.29 0.85 16 25 O -0.38 -5.10 10.70 -35.23 -0.38 -5.48 16 26 C 0.03 0.33 2.58 -26.01 -0.07 0.26 16 27 H 0.10 1.05 3.83 -51.93 -0.20 0.85 16 28 C -0.16 -1.92 9.44 37.16 0.35 -1.57 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.64 7.38 -51.94 -0.38 0.25 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.06 0.78 6.30 -51.93 -0.33 0.45 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.06 0.76 5.68 -51.93 -0.29 0.46 16 38 H 0.10 1.24 7.06 -51.93 -0.37 0.88 16 39 H 0.09 0.91 7.93 -51.92 -0.41 0.50 16 40 H 0.06 0.54 5.78 -51.93 -0.30 0.24 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.78 3.83 -51.93 -0.20 0.58 16 43 H 0.04 0.28 8.14 -51.92 -0.42 -0.14 16 44 H 0.04 0.35 7.69 -51.93 -0.40 -0.05 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.10 1.33 3.35 -51.93 -0.17 1.16 16 47 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 50 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.06 0.69 6.83 -51.93 -0.35 0.34 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -34.08 395.15 -7.71 -41.78 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -8.76 Total: 1.61 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 1.34 Total: 4.22 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.59 Total: -46.98 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.63 Total: -23.48 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.08 -7.71 -41.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489405842.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.492 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds