Wall clock time and date at job start Tue Mar 31 2020 05:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46913 * 180.31970 * 3 2 1 5 5 C 1.36928 * 119.99900 * 85.78345 * 4 3 2 6 6 H 1.08002 * 119.99992 * 218.20555 * 5 4 3 7 7 C 1.38815 * 120.00215 * 38.48142 * 5 4 3 8 8 N 1.31623 * 119.99806 * 212.38911 * 7 5 4 9 9 Si 1.86796 * 120.00087 * 32.38965 * 7 5 4 10 10 H 1.48496 * 109.47361 * 95.76789 * 9 7 5 11 11 H 1.48504 * 109.47030 * 215.76927 * 9 7 5 12 12 H 1.48502 * 109.47079 * 335.77038 * 9 7 5 13 13 S 1.65600 * 119.99712 * 265.78205 * 4 3 2 14 14 O 1.42094 * 106.40363 * 23.53783 * 13 4 3 15 15 O 1.42101 * 106.40027 * 156.46365 * 13 4 3 16 16 C 1.76206 * 107.21717 * 269.99810 * 13 4 3 17 17 C 1.33859 * 124.51547 * 90.00427 * 16 13 4 18 18 C 1.37416 * 115.10963 * 179.97438 * 17 16 13 19 19 C 1.36752 * 113.28695 * 359.97438 * 18 17 16 20 20 C 1.46394 * 125.46045 * 179.97438 * 19 18 17 21 21 O 1.21627 * 120.00175 * 0.02562 * 20 19 18 22 22 O 1.34898 * 119.99531 * 179.97438 * 20 19 18 23 23 C 1.45200 * 116.99678 * 180.02562 * 22 20 19 24 24 S 1.70606 * 124.51884 * 269.70025 * 16 13 4 25 25 H 4.40636 * 5.51499 * 180.02562 * 4 1 2 26 26 H 1.09005 * 109.47477 * 60.31945 * 3 2 1 27 27 H 1.09000 * 109.47201 * 300.31918 * 3 2 1 28 28 H 0.96999 * 119.99544 * 180.02562 * 8 7 5 29 29 H 1.08001 * 122.44734 * 359.93998 * 17 16 13 30 30 H 1.08002 * 123.35567 * 179.97438 * 18 17 16 31 31 H 1.09007 * 109.47182 * 300.00075 * 23 22 20 32 32 H 1.08993 * 109.47443 * 60.00141 * 23 22 20 33 33 H 1.09005 * 109.47146 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1336 1.3821 0.0077 5 6 3.2793 2.0501 1.1941 6 1 3.0301 3.0991 1.2573 7 6 3.7527 1.3805 2.3141 8 7 3.3336 1.7256 3.5132 9 14 4.9845 -0.0102 2.1196 10 1 6.3598 0.5162 2.3108 11 1 4.7106 -1.0595 3.1341 12 1 4.8623 -0.5930 0.7592 13 16 3.5087 2.1357 -1.4184 14 8 2.7707 1.4669 -2.4319 15 8 3.4046 3.5317 -1.1740 16 6 5.2096 1.8137 -1.7469 17 6 5.6621 0.7639 -2.4433 18 6 7.0277 0.7019 -2.5835 19 6 7.6810 1.7392 -1.9774 20 6 9.1317 1.9353 -1.9604 21 8 9.8599 1.1366 -2.5181 22 8 9.6606 3.0024 -1.3269 23 6 11.1064 3.1335 -1.3512 24 16 6.4989 2.8021 -1.2259 25 1 -1.0502 -0.0004 0.0002 26 1 3.0096 -0.5081 -0.8929 27 1 3.0095 -0.5180 0.8871 28 1 3.6647 1.2579 4.2958 29 1 5.0022 0.0196 -2.8640 30 1 7.5345 -0.0873 -3.1190 31 1 11.5584 2.2600 -0.8810 32 1 11.4473 3.2073 -2.3838 33 1 11.3991 4.0311 -0.8065 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490850500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:17 Heat of formation + Delta-G solvation = -49.062019 kcal Electronic energy + Delta-G solvation = -23471.064882 eV Core-core repulsion = 19718.655977 eV Total energy + Delta-G solvation = -3752.408905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.027 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36408 -37.61797 -36.59019 -36.33191 -35.96496 -34.63571 -32.96152 -31.68168 -30.32795 -27.81315 -26.94211 -25.03401 -24.22745 -21.99349 -19.80893 -19.07079 -18.62537 -18.31193 -17.33799 -16.71567 -16.51805 -16.44106 -15.93592 -15.76295 -15.38853 -14.34477 -14.12393 -13.76298 -13.67497 -13.41686 -13.15867 -13.04433 -12.88314 -12.55217 -12.43698 -12.15821 -11.44089 -11.35319 -11.02144 -10.95808 -10.94710 -10.91147 -10.80453 -10.56069 -10.46933 -10.39700 -9.84783 -9.61141 -9.33444 -9.03594 -8.52646 -8.36365 -7.09726 -4.39886 0.26348 1.29480 1.71399 2.12399 2.19916 2.56488 2.81255 2.93921 2.96365 3.00411 3.30995 3.48319 3.72741 4.12781 4.35721 4.73536 4.79468 4.94184 5.01580 5.02193 5.30671 5.34103 5.37380 5.58495 5.71100 5.97612 5.99144 6.07814 6.22734 6.42837 6.46831 6.69180 7.04777 7.58503 7.91701 8.23096 8.46440 8.59308 9.94422 Molecular weight = 329.03amu Principal moments of inertia in cm(-1) A = 0.015552 B = 0.005158 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.932241 B = 5426.788796 C = 6167.176531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.168 4.168 3 C 0.234 3.766 4 N -0.809 5.809 5 C -0.236 4.236 6 H 0.130 0.870 7 C 0.076 3.924 8 N -0.784 5.784 9 Si 0.847 3.153 10 H -0.262 1.262 11 H -0.268 1.268 12 H -0.245 1.245 13 S 2.513 3.487 14 O -0.987 6.987 15 O -0.966 6.966 16 C -0.761 4.761 17 C -0.066 4.066 18 C -0.060 4.060 19 C -0.277 4.277 20 C 0.544 3.456 21 O -0.504 6.504 22 O -0.355 6.355 23 C 0.038 3.962 24 S 0.358 5.642 25 H 0.214 0.786 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.289 0.711 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.986 -2.206 -3.626 9.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.170 4.170 3 C 0.109 3.891 4 N -0.630 5.630 5 C -0.390 4.390 6 H 0.147 0.853 7 C -0.145 4.145 8 N -0.417 5.417 9 Si 0.669 3.331 10 H -0.187 1.187 11 H -0.192 1.192 12 H -0.169 1.169 13 S 2.614 3.386 14 O -0.977 6.977 15 O -0.955 6.955 16 C -0.955 4.955 17 C -0.099 4.099 18 C -0.096 4.096 19 C -0.398 4.398 20 C 0.388 3.612 21 O -0.394 6.394 22 O -0.272 6.272 23 C -0.055 4.055 24 S 0.631 5.369 25 H 0.231 0.769 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.170 0.830 30 H 0.171 0.829 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.925 -0.537 -3.668 8.749 hybrid contribution 1.379 -2.348 -0.741 2.822 sum 9.304 -2.884 -4.410 10.692 Atomic orbital electron populations 1.24691 0.95657 0.99972 1.02663 1.23385 0.94592 1.00161 0.98850 1.18236 0.84240 0.84153 1.02514 1.54229 1.65074 1.22183 1.21540 1.19523 1.37709 0.99243 0.82550 0.85299 1.25901 0.95579 0.98130 0.94864 1.69929 1.34250 1.38439 0.99059 0.87359 0.83019 0.82078 0.80641 1.18700 1.19224 1.16867 1.13105 0.74019 0.76090 0.75424 1.93355 1.69516 1.75123 1.59710 1.93388 1.85640 1.31555 1.84952 1.37152 1.35800 1.09095 1.13449 1.19579 0.94517 0.97674 0.98172 1.20868 0.93614 0.97188 0.97932 1.24030 0.94633 1.06518 1.14576 1.19704 0.87430 0.78773 0.75247 1.90857 1.61420 1.44221 1.42910 1.86617 1.25758 1.45046 1.69749 1.23296 0.76041 1.03214 1.02969 1.83065 0.89547 1.19557 1.44764 0.76950 0.88889 0.89588 0.90043 0.82968 0.82944 0.91744 0.91765 0.87748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.72 19.25 29.55 0.57 -3.15 16 2 C -0.17 -3.34 13.65 -37.12 -0.51 -3.85 16 3 C 0.23 4.64 4.32 -6.83 -0.03 4.61 16 4 N -0.81 -17.89 2.38 -62.77 -0.15 -18.04 16 5 C -0.24 -5.57 9.38 -15.06 -0.14 -5.72 16 6 H 0.13 3.30 7.63 -52.49 -0.40 2.90 16 7 C 0.08 1.74 5.11 -17.43 -0.09 1.65 16 8 N -0.78 -18.49 13.97 55.49 0.78 -17.71 16 9 Si 0.85 16.81 26.26 -169.99 -4.46 12.35 16 10 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 11 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 12 H -0.25 -4.52 5.85 56.52 0.33 -4.19 16 13 S 2.51 56.40 5.73 -107.50 -0.62 55.79 16 14 O -0.99 -23.19 16.73 -57.17 -0.96 -24.15 16 15 O -0.97 -23.98 16.76 -57.17 -0.96 -24.94 16 16 C -0.76 -14.94 6.35 29.19 0.19 -14.76 16 17 C -0.07 -1.15 9.77 -41.42 -0.40 -1.55 16 18 C -0.06 -0.97 10.01 -40.42 -0.40 -1.38 16 19 C -0.28 -4.71 6.45 -36.84 -0.24 -4.95 16 20 C 0.54 8.82 7.92 34.01 0.27 9.09 16 21 O -0.50 -8.73 16.64 -19.36 -0.32 -9.05 16 22 O -0.36 -5.03 10.42 -41.03 -0.43 -5.46 16 23 C 0.04 0.38 10.57 101.05 1.07 1.44 16 24 S 0.36 6.50 22.68 -107.50 -2.44 4.07 16 25 H 0.21 2.77 7.80 -54.08 -0.42 2.35 16 26 H 0.09 1.62 7.64 -51.93 -0.40 1.22 16 27 H 0.09 1.61 4.22 -51.93 -0.22 1.40 16 28 H 0.29 6.17 8.31 -40.82 -0.34 5.83 16 29 H 0.15 2.34 8.02 -52.49 -0.42 1.92 16 30 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -29.55 330.52 -7.05 -36.60 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -2.76 Total: 4.13 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 0.28 Total: -18.56 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.63 Total: -35.76 kcal Atomic # 8 Polarization: -60.94 SS G_CDS: -2.66 Total: -63.60 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -4.46 Total: 12.35 kcal Atomic # 16 Polarization: 62.90 SS G_CDS: -3.05 Total: 59.85 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.55 -7.05 -36.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490850500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.463 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds