Wall clock time and date at job start Tue Mar 31 2020 05:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76190 * 100.00524 * 2 1 4 4 N 1.32662 * 119.12291 * 0.02562 * 3 2 1 5 5 C 1.32062 * 120.97818 * 179.97438 * 4 3 2 6 6 C 1.39000 * 119.22756 * 359.72530 * 5 4 3 7 7 Cl 1.73609 * 120.79924 * 180.27676 * 6 5 4 8 8 C 1.39589 * 118.40214 * 0.51091 * 6 5 4 9 9 C 1.48381 * 120.51991 * 179.75770 * 8 6 5 10 10 O 1.21492 * 119.99539 * 359.73311 * 9 8 6 11 11 N 1.34775 * 120.00426 * 179.72488 * 9 8 6 12 12 C 1.47066 * 136.05557 * 180.02562 * 11 9 8 13 13 C 1.53504 * 88.04678 * 152.88612 * 12 11 9 14 14 O 1.42897 * 114.20384 * 272.50597 * 13 12 11 15 15 C 1.50697 * 114.20578 * 139.68331 * 13 12 11 16 16 H 1.08005 * 119.99898 * 359.97438 * 15 13 12 17 17 C 1.37876 * 120.00143 * 180.02562 * 15 13 12 18 18 N 1.31512 * 119.99546 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00178 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47007 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47307 * 120.00143 * 19 17 15 22 22 H 1.48500 * 109.46938 * 240.00170 * 19 17 15 23 23 C 1.47063 * 136.05633 * 0.05293 * 11 9 8 24 24 N 1.32282 * 119.12961 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47681 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46871 * 300.00054 * 1 2 3 27 27 H 1.09007 * 109.46915 * 59.99650 * 1 2 3 28 28 H 1.07997 * 120.39110 * 180.02562 * 5 4 3 29 29 H 1.09002 * 113.46793 * 267.69584 * 12 11 9 30 30 H 1.08999 * 113.46805 * 38.07951 * 12 11 9 31 31 H 0.96703 * 113.99737 * 179.97438 * 14 13 12 32 32 H 0.97005 * 119.99959 * 180.02562 * 18 17 15 33 33 H 1.08994 * 113.46736 * 321.86643 * 23 11 9 34 34 H 1.09003 * 113.46602 * 92.24602 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1161 1.7351 0.0000 4 7 1.0870 2.5723 0.0005 5 6 1.2742 3.8796 0.0010 6 6 2.5712 4.3794 0.0069 7 17 2.8643 6.0906 0.0150 8 6 3.6323 3.4726 0.0010 9 6 5.0356 3.9547 0.0014 10 8 5.2681 5.1471 0.0020 11 7 6.0522 3.0699 0.0014 12 6 7.5210 3.1445 0.0021 13 6 7.5377 1.7776 0.7005 14 8 7.4565 1.8467 2.1254 15 6 8.6131 0.8446 0.2065 16 1 9.2870 1.1629 -0.5751 17 6 8.7360 -0.4159 0.7517 18 7 7.9143 -0.8040 1.7024 19 14 10.0694 -1.5722 0.1399 20 1 10.8553 -0.9013 -0.9266 21 1 10.9681 -1.9314 1.2662 22 1 9.4443 -2.8034 -0.4066 23 6 6.1810 1.6049 0.0000 24 7 3.3659 2.1685 0.0005 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.4295 4.5525 0.0019 29 1 7.9571 3.1271 -0.9967 30 1 7.9143 3.9522 0.6195 31 1 7.4669 0.9840 2.5622 32 1 8.0009 -1.6906 2.0862 33 1 5.4351 1.1031 0.6163 34 1 6.2588 1.1769 -0.9995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526018551.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:33 Heat of formation + Delta-G solvation = 16.188723 kcal Electronic energy + Delta-G solvation = -23402.990863 eV Core-core repulsion = 19683.660487 eV Total energy + Delta-G solvation = -3719.330376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.039 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.20856 -39.43359 -37.50094 -36.62075 -34.26582 -33.89198 -32.16489 -31.95234 -29.25459 -28.84348 -26.10768 -25.06859 -24.93474 -24.43371 -20.92864 -19.26642 -18.33046 -17.83324 -17.23854 -16.61052 -15.98156 -15.73989 -15.49449 -15.08285 -14.78639 -14.52349 -14.12917 -14.11365 -13.66723 -13.18547 -12.92881 -12.70030 -12.47358 -12.26076 -12.00479 -11.67304 -11.53789 -11.43356 -11.07975 -11.05644 -10.88086 -10.72155 -10.46273 -10.26637 -10.05317 -9.85399 -9.42338 -9.12721 -8.75991 -8.33868 -7.92930 -7.84143 -6.37416 -4.47552 0.20837 0.56970 1.00074 1.91006 1.99585 2.84429 3.13094 3.15903 3.25477 3.29261 3.67393 3.79899 4.19043 4.20177 4.34154 4.53204 4.85522 4.94711 4.98620 5.21892 5.55703 5.58303 5.65287 5.96699 6.13735 6.39109 6.40855 6.59038 6.60219 6.91024 7.12755 7.47088 7.65636 7.82272 8.29844 8.53747 8.57254 9.23330 9.51178 10.69569 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.004521 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.283318 B = 6191.230372 C = 8132.221249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S 0.034 5.966 3 C 0.286 3.714 4 N -0.507 5.507 5 C 0.175 3.825 6 C -0.116 4.116 7 Cl -0.003 7.003 8 C 0.177 3.823 9 C 0.577 3.423 10 O -0.528 6.528 11 N -0.606 5.606 12 C 0.109 3.891 13 C 0.238 3.762 14 O -0.572 6.572 15 C -0.533 4.533 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.895 5.895 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.281 1.281 22 H -0.280 1.280 23 C 0.083 3.917 24 N -0.449 5.449 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.185 0.815 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.395 0.605 32 H 0.273 0.727 33 H 0.078 0.922 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.102 2.666 -3.707 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 S 0.268 5.732 3 C -0.088 4.088 4 N -0.226 5.226 5 C 0.003 3.997 6 C -0.153 4.153 7 Cl 0.026 6.974 8 C 0.024 3.976 9 C 0.363 3.637 10 O -0.406 6.406 11 N -0.337 5.337 12 C -0.013 4.013 13 C 0.196 3.804 14 O -0.385 6.385 15 C -0.571 4.571 16 H 0.091 0.909 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.735 3.265 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.040 4.040 24 N -0.167 5.167 25 H 0.126 0.874 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.202 0.798 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.251 0.749 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.585 2.033 -3.694 15.183 hybrid contribution -0.260 0.844 -0.210 0.908 sum -14.845 2.877 -3.904 15.617 Atomic orbital electron populations 1.23629 0.94915 1.06505 1.07135 1.86318 1.05696 0.91616 1.89587 1.25228 0.86821 1.01454 0.95344 1.68761 1.34266 1.03496 1.16038 1.23266 0.94735 0.91526 0.90136 1.22703 0.95763 0.89700 1.07152 1.98422 1.96216 1.06694 1.96059 1.21840 0.95518 0.88018 0.92207 1.17014 0.82070 0.85114 0.79522 1.90826 1.83320 1.14360 1.52072 1.49597 1.06929 1.10292 1.66853 1.23466 0.77034 1.00297 1.00494 1.19609 0.90689 0.89769 0.80366 1.86032 1.96310 1.37822 1.18325 1.21424 1.16047 0.98234 1.21415 0.90850 1.25067 0.95783 0.97870 0.94242 1.69279 1.37071 1.20819 1.26373 0.86272 0.81135 0.80188 0.78889 1.19424 1.20644 1.20626 1.24322 1.01125 0.77166 1.01392 1.68875 1.20846 1.14451 1.12566 0.87414 0.89048 0.89107 0.79819 0.89179 0.91151 0.74884 0.91610 0.90320 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.61 101.05 0.97 -0.31 16 2 S 0.03 0.43 22.89 -107.50 -2.46 -2.03 16 3 C 0.29 4.42 7.85 -90.98 -0.71 3.71 16 4 N -0.51 -6.75 9.11 -13.43 -0.12 -6.88 16 5 C 0.17 2.13 11.13 -17.17 -0.19 1.94 16 6 C -0.12 -1.77 6.40 -38.80 -0.25 -2.02 16 7 Cl 0.00 -0.04 26.22 -51.86 -1.36 -1.40 16 8 C 0.18 3.26 6.79 -82.64 -0.56 2.70 16 9 C 0.58 12.20 8.07 -12.08 -0.10 12.10 16 10 O -0.53 -11.65 14.90 5.37 0.08 -11.57 16 11 N -0.61 -13.25 3.69 -185.89 -0.69 -13.94 16 12 C 0.11 2.37 8.02 -8.50 -0.07 2.30 16 13 C 0.24 5.75 1.59 -91.17 -0.14 5.61 16 14 O -0.57 -14.95 13.54 -35.23 -0.48 -15.42 16 15 C -0.53 -13.31 8.70 -34.44 -0.30 -13.61 16 16 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 17 C 0.07 1.81 5.40 -17.82 -0.10 1.72 16 18 N -0.90 -22.75 11.02 55.43 0.61 -22.14 16 19 Si 0.91 19.36 29.54 -169.99 -5.02 14.34 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 23 C 0.08 1.85 6.96 -8.42 -0.06 1.79 16 24 N -0.45 -8.18 8.17 -10.02 -0.08 -8.26 16 25 H 0.11 0.66 8.14 -51.92 -0.42 0.23 16 26 H 0.09 0.76 8.11 -51.92 -0.42 0.34 16 27 H 0.09 0.73 8.11 -51.91 -0.42 0.31 16 28 H 0.18 1.46 8.06 -52.49 -0.42 1.03 16 29 H 0.09 1.77 8.10 -51.93 -0.42 1.35 16 30 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.39 10.44 6.33 45.56 0.29 10.73 16 32 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 33 H 0.08 1.85 7.19 -51.93 -0.37 1.48 16 34 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 LS Contribution 327.31 15.07 4.93 4.93 Total: -1.00 -28.70 327.31 -8.67 -37.37 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -2.58 Total: 9.07 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: -1.51 Total: 15.93 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.28 Total: -51.22 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.40 Total: -27.00 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -2.46 Total: -2.03 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.36 Total: -1.40 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.70 -8.67 -37.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526018551.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.560 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds